BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61830.1
Length=2347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349241 jgi|Araly1|349241|fgenesh1_pg.C_scaffold_5002633 1555 0.0
Ahg935633 jgi|Araly1|935633|scaffold_403621.1 1083 0.0
> Ahg349241 jgi|Araly1|349241|fgenesh1_pg.C_scaffold_5002633
Length=1827
Score = 1555 bits (842), Expect = 0.0
Identities = 899/927 (97%), Gaps = 2/927 (0%)
Strand=Plus/Plus
Query 283 ATGGCGAGTGTTGAAGGTGATGATGATTTCGGAAGTTCTTCGTCAAGGTCTTATCAAGAT 342
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCGAGTGTTGAAGGTGATGACGATTTCGGAAGTTCTTCGTCAAGGTTTTATCAAGAT 60
Query 343 CAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCATTAGTGGAAGTTCCTCGTGCT 402
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCATTAGTGGAGGTTCCTCGTGCT 120
Query 403 CAAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTTGTGGCGTCAACTAAT 462
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACGAGAAAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTTGTGGCGTCAACTAAT 180
Query 463 CAAGGAATCAATTCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATACTTTGTCGA 522
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CAAGGAATCAAATCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATTCTTTGTCGA 240
Query 523 GTTCTTGATGTCACTTTAAAGGCGGAGCATGAAACAGATGAGGTTTACGCTCAGATCACA 582
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTTCTTGGTGTCACTTTAAAGGCGGAGCATGAAACAGATGAAGTTTACGCTCAGATCACA 300
Query 583 TTACAACCAGAGGAAGATCAAAGTGAACCAACAAGTCTTGATCCACCTATTGTTGGACCA 642
||||| ||||||||||||||||||||||| |||||||||||||||||| | |||| ||||
Sbjct 301 TTACAGCCAGAGGAAGATCAAAGTGAACCCACAAGTCTTGATCCACCTCTGGTTGAACCA 360
Query 643 ACTAAGCAAGA-GTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCA 701
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTAAGCAA-ATGTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCA 419
Query 702 TGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTTCTTTGGATATGAC 761
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 TGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTGCTTTGGATATGAC 479
Query 762 ACAAGCTACTCCTACTCAAGAACTTGTGACTAGAGATCTTCATGGCTTTGAATGGAGGTT 821
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ACAAGCGACTCCTACTCAAGAACTTGTGACTAGAGATCTTCATGGGTTTGAATGGAGGTT 539
Query 822 TAAGCATATATTCAGAGGACAACCACGGAGGCATTTGCTTACTACGGGTTGGAGTACATT 881
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TAAGCATATATTCAGAGGGCAACCACGGAGGCATTTGCTTACAACGGGTTGGAGTACATT 599
Query 882 TGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGTGAGAATGG 941
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGCGAGAATGG 659
Query 942 GGATTTACGGGTTGGAGTGAGACGATTAGCTCGGCATCAAAGCACAATGCCTACTTCGGT 1001
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 660 GGATTTACGGGTTGGAGTGAGGCGATTAGCTCGGCATCAAAGCACGATGCCTACTTCGGT 719
Query 1002 TATTTCAAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTGCGTAC 1061
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATCTCGAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTGCGTAC 779
Query 1062 AACAACAATCTTTGTTGTCTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGTGAA 1121
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACAACAATCTTTGTTGTGTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGTGAA 839
Query 1122 CAAGTATATGGAAGCTATAAAGCATGGATTTTCTCTCGGTACCCGATTCAGAATGAGGTT 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAAGTATATGGAAGCTATAAAGCATGGATTTTCTCTCGGTACCCGATTCAGAATGAGGTT 899
Query 1182 TGAAGGAGAAGAGTCTCCTGAGAGAAT 1208
|||||||||||||||||||||||||||
Sbjct 900 TGAAGGAGAAGAGTCTCCTGAGAGAAT 926
Score = 1391 bits (753), Expect = 0.0
Identities = 831/867 (96%), Gaps = 11/867 (1%)
Strand=Plus/Plus
Query 1209 ATTTACTGGTACGATTGTGGGAAGTGGAGATCTATCTTCACAATGGCCAGCTTCTAAATG 1268
|||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 ATTTACGGGTACAATTGTGGGAACCGGAGATCTATCTTCACAATGGCCAGCTTCTAAATG 1019
Query 1269 GAGGTCATTGCAGGTACAATGGGATGAGCCAACAACAGTTCAGAGACCAGATAAAGTCTC 1328
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 GAGGTCATTGCAGGTCCAATGGGATGAGCCAACAACAGTTCAGAGACCAGACAAAGTCTC 1079
Query 1329 ACCATGGGAGATAGAGCCTTTCTTGGCAACTTCCCCAATTTCAACTCCTGCTCAACAACC 1388
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 ACCATGGGAGATTGAGCCTTTCTTGGCAACTTCCCCAATTTCAACCCCTGCTCAACAACC 1139
Query 1389 ACAATCGAAATGCAAGCGGTCAAGACCCATCGAGCCATCAGTTAAAACACCAGCCCCACC 1448
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 ACAATCGAAATGCAAGCGGTCAAGACCCATCGAGCCATCAGTTATAACACCAGCCCCACC 1199
Query 1449 TAGTTTCTTGTACAGCCTCCCTCAGAGCCAAGATTCCATTAATGCATCCCTTAAACTGTT 1508
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 TAGTTTCTTGTACAGCCTCCCTCAGAGCCAAGATTCCATCAATGCATCCCTTAAACTGTT 1259
Query 1509 TCAAGATCCATCACTTGAGAGAATTTCAGGTGGATACTCCTCAAACAACAGCTTCAAACC 1568
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 CCAAGATCCATCACTTGAGAGAAATTCAGGTGGATACTCCTCAAACAACAGCTTCAAACC 1319
Query 1569 CGAGA------CTCCTCCT-C-C-TCCAACGAATTGTAGCTATAGGTTGTTTGGATTTGA 1619
||||| |||||||| | | |||||||||||||||||||||||| |||||||||||
Sbjct 1320 CGAGACTCCTCCTCCTCCTCCTCGTCCAACGAATTGTAGCTATAGGTTATTTGGATTTGA 1379
Query 1620 TCTCACAAGCAATTCTCCTGCTCCAATCCCTCAAGACAAGCAACCGATGGATACTTGTGG 1679
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TCTCACAAGCAATCCTCCTGCTCCAATCCCTCAAGACAAGCAACCGATGGATACTTGTGG 1439
Query 1680 AGCTGCCAAGTGTCAAGAACCCATCACTCCAACCTCAATGAGTGAGCAGAAGAAGCAACA 1739
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1440 AGCTGCCAAGTGTCAAGAACCCATCACTCCAACCTCAATGAATGAGCAGAAGAAGCAACA 1499
Query 1740 AACATCAAGAAGTCGAACTAAAGTGCAAATGCAAGGCATTGCGGTTGGTCGTGCGGTTGA 1799
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1500 AACATCAAGAAGTCGAACTAAAGTGCAAATGCAAGGCATTGCTGTTGGTCGTGCGGTTGA 1559
Query 1800 TTTAACACTGTTGAAATCTTACGATGAACTGATTGATGAGCTTGAGGAGATGTTTGAGAT 1859
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1560 TTTAACACTGTTGAAATCATACGATGAACTGATTGAGGAGCTTGAGGAGATGTTTGAGAT 1619
Query 1860 TCAAGGACAGCTTCTTGCC-CGAGACAAATGGATCGTTGTCTTCACTGATGATGAAGGAG 1918
|||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1620 TCAAGGACAGCTTCGT-CCTCGAGACAAATGGATCGTTGTCTTCACAGATGATGAAGGAG 1678
Query 1919 ATATGATGCTTGCTGGTGATGATCCGTGGAATGAGTTTTGCAAGATGGCAAAGAAGATAT 1978
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1679 ATATGATGCTTGCTGGAGATGATCCATGGAATGAGTTTTGCAAGATGGCTAAGAAGATAT 1738
Query 1979 TTATATATTCGAGCGATGAGGTTAAGAAAATGACAACGAAACTGAAGATTTCTTCGTCGT 2038
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1739 TTATATATTCGAGCGATGAGGTTAAGAAAATGACAACGAAATTGAAGATTTCTTCGTCGT 1798
Query 2039 TAGAGAATGAGGAATATGGTAATGAAT 2065
|||||||||| ||||||||||||||||
Sbjct 1799 TAGAGAATGAAGAATATGGTAATGAAT 1825
> Ahg935633 jgi|Araly1|935633|scaffold_403621.1
Length=1844
Score = 1083 bits (586), Expect = 0.0
Identities = 894/1041 (86%), Gaps = 28/1041 (3%)
Strand=Plus/Plus
Query 325 TCAAGGTCTTATCAAGATCAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCA-TT 383
||| ||||| || | |||||| | ||| | ||||||||||||| ||||||||| ||| ||
Sbjct 52 TCACGGTCTAATGATGATCAATTGTACTCGGAGCTATGGAAAGCTTGTGCAGGGCCACTT 111
Query 384 AGTGGAAGTTCCTCGTGCTCAAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACA 443
||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||
Sbjct 112 -GTGGAAGTTCCTCGTTCTGGTGAAAGAGTTTTTTACTTCCCTCAAGGTCACATGGAACA 170
Query 444 ACTT-GTGGCGTCAACTAATCAAGGAATCAATTCA-GAAGAAATACCTGTTTTTGATCTT 501
| || ||||| || |||||||||||| | || | |||||||||| || ||| |||||
Sbjct 171 A-TTGGTGGCTTCTACTAATCAAGGAGT-TGTTGATCAAGAAATACCAGTGTTTAATCTT 228
Query 502 CCTCCAAAGATACTTTGTCGAGTTCTTGA-TGTCACT-TTAAAGGCGGAGCATGAAACAG 559
||||||||||||||||||||||||||| | ||| || ||||| || |||||||| ||||
Sbjct 229 CCTCCAAAGATACTTTGTCGAGTTCTT-AGTGT-TCTGTTAAAAGCAGAGCATGAGACAG 286
Query 560 ATGAGGTTTACGCTCAGATCACATTACAACCAGAGGAAGATCAAAGTGAACCAACAAGTC 619
| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 287 ACGAGGTTTATGCTCAGATTACATTACAACCAGAAGAAGATCAAAGTGAACCCACAAGTC 346
Query 620 TTGATCCACCTATT-GTTGGACCAACT-AAGCAAGAGTTTCATTCGTTTGTTAAGATTTT 677
||||||||||| || || | |||| || || ||| | || |||||||||| |||||| |
Sbjct 347 TTGATCCACCT-TTGGTCGAACCAGCTAAACCAA-CGGTTGATTCGTTTGTGAAGATTCT 404
Query 678 AACGGCTTCAGATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGA 737
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AACAGCTTCTGATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGA 464
Query 738 ATGCTTGCCTTCT-TTGGATATGACACAAGCTACTCCTACTCAAGAACTTGT-GACTAGA 795
|| || ||||| ||| ||||||||||| |||| || |||||||||||||| | |||||
Sbjct 465 GTGTTTACCTTCACTTG-ATATGACACAACCTACACCGACTCAAGAACTTGTAG-CTAGA 522
Query 796 GATCTTCATGGCTTTGAATGGAGGTTTAAGCATATATTCAGAGGACAACCACGGAGGCAT 855
||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||
Sbjct 523 GATCTTCATGGCTATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCAAGGAGGCAT 582
Query 856 TTGCTTACTACGGGTTGGAGTACATTTGTATCCTCGAAAAGACTTGTAGCTGGAGATGCT 915
|| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 583 TTACTTACAACGGGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCA 642
Query 916 TTTGTGTTCTTGAGGGGTGAGAAT-GGGGATTTACGGGTTGGAGTGAGACGATTAGCTCG 974
|||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct 643 TTTGTGTTCTTGAGGGGTGA-AACCGGGGATTTACGAGTTGGTGTGAGACGTTTAGCTAA 701
Query 975 GCATCAAAGCACAATGCC--TACTTCGGTTATTTCAAGTCAGAGCATGCATTTGGGAGTT 1032
||| |||||||| ||||| || | | |||||||| |||||||| |||| | ||||||||
Sbjct 702 GCAGCAAAGCACGATGCCCGTA-T-CAGTTATTTCGAGTCAGAGTATGCGTCTGGGAGTT 759
Query 1033 CTTGCTACAGCTTCTCATGCTGTG-CGTACAACAACAATCTTTGTTGTCTTTTACAAGCC 1091
||||||||||||||||||||||| | |||||||| || ||||||||||| || || ||
Sbjct 760 CTTGCTACAGCTTCTCATGCTGTTACC-ACAACAACTATATTTGTTGTCTTCTATAAACC 818
Query 1092 TAGGATAAGCCAATTCATAGTTGGGGTGAACAAGTATATGGAAGCTATAAAGCATGGATT 1151
|||||||||||||| ||| | | |||||||||||||||| || || ||| | || ||
Sbjct 819 AAGGATAAGCCAATTTATAATCAGTGTGAACAAGTATATGGTGGCGATGAAGAACGGGTT 878
Query 1152 TTCTCTCGGTACCCGATTCAGAATGAGGTTTGAAGGAGAAGAGTCTCCTGAGAGAATATT 1211
||||||||||| || || || ||||| || |||||||||||||||||||||||||||||
Sbjct 879 TTCTCTCGGTATGCGGTTTAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATATT 938
Query 1212 TACTGGTACGATTGTGGGAAGTGGAGATCTATCTTCACAATGGCCAGCTTCTAAATGGAG 1271
||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 939 TACAGGTACGATTGTTGGTAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAG 998
Query 1272 GTCATTGCAGGTACAATGGGATGAGCCAACAAC-AGTTCAGAGACCAGATAAAGTCTCAC 1330
|||||||||| | |||||||| |||||| | | | ||| ||||||| | || |||||||
Sbjct 999 GTCATTGCAGATCCAATGGGACGAGCCATCTTCTA-TTCCGAGACCAAACAAGGTCTCAC 1057
Query 1331 CATGGGAGATAGAGCCTTTCT 1351
| |||||||| ||||||||||
Sbjct 1058 CGTGGGAGATTGAGCCTTTCT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88407458645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5