BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61840.1
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486685 jgi|Araly1|486685|fgenesh2_kg.5__2677__AT3G61840.1 835 0.0
> Ahg486685 jgi|Araly1|486685|fgenesh2_kg.5__2677__AT3G61840.1
Length=659
Score = 835 bits (452), Expect = 0.0
Identities = 569/622 (91%), Gaps = 21/622 (3%)
Strand=Plus/Plus
Query 1 TCTTCAATGACAATTACATATATTT-AATCCATTGTCTTCTTCTTCAAACGAATCATAAT 59
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1 TCTTCAATGACAATTACATATATTTAAATCCATTGTCTTCTTCTTCAAAGGAATCATAAT 60
Query 60 AAGCAGAAACAAGAAAGAGATATGGTTAAAACCCaaaaaaaGAACAAGAAAGATACAAGT 119
| ||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 61 ATGCAGAAACAAG-AA-AGATATGGTTACAACCCAAAAAAAGAACAAGAAAG---CAAGT 115
Query 120 TTTGAC---GCAGACGATAATGAGACGATGATAATCATCACATCGAAACTTCAACATGTA 176
|||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 116 TTTGACGAAGAAGACGATAACGAGGCGATGATAATCATCACATCGAAACTTCAACATGTG 175
Query 177 TTAGCCGCGAAATCGAGAAGGCTACAATACTTATCATCACCGGTAACGACTAA-AGACGT 235
||||| || ||||||||||||||||||||| | |||||||||||||| | ||| | ||||
Sbjct 176 TTAGCAGCAAAATCGAGAAGGCTACAATACCTGTCATCACCGGTAACTAGTAACA-ACGT 234
Query 236 GTCATTGTCACTCATGTCGTCCCCTGATGATTCACTCTCTCGCGCTTCGATTCCTTTCTC 295
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GTCATTGTCACTCTTGTCGTCCCCTGATGATTCACTCTCTCGCGCTTCGATTCCTTTCTC 294
Query 296 ATGGGAAGAAGAACCTGGCAAGCCTAAACACCATGTTCGTCATCCTTCTTACTCCAAGTG 355
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATGGGAAGTAGAACCTGGCAAGCCTAAACACCATGTTCGTCATCCTTCTTACTCCAAGTG 354
Query 356 TCTTGATTTGCCACCGAGGATGCTCTTTCCTGACGAATTTACCAAAATGCCTCGGACAGC 415
|||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||
Sbjct 355 TCTTGATTTGCCACCGAGAATGCTCCTTCCTGACGAGTTTACCAAAATGCCTCTGACAGC 414
Query 416 GAATCAT-G--GTCGT-TATCTCGCCGGGTGGAAACGGTGGTTCCGGTGGAAGAAAGAGA 471
|||||| | ||||| | | ||| ||||||||||||||||||| |||||||||||||
Sbjct 415 TAATCATCGCTGTCGTCT-T-TCG--GGGTGGAAACGGTGGTTCCACTGGAAGAAAGAGA 470
Query 472 GAGATGGTGATGCTTATGTGGCCGGAAGTGGAAGTTAT-ATTTATCCATCGGAAGATGAA 530
||| |||||||| |||||||||||||||| | |||| | |||||||||||||||||||||
Sbjct 471 GAGGTGGTGATGATTATGTGGCCGGAAGTTGTAGTT-TCATTTATCCATCGGAAGATGAA 529
Query 531 GATGATACCAAGACCACAAGAACAAAAGGTCTCCATTGTTTCTCTTACGTCACTAGGTGT 590
||||| | |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 530 GATGACATGAAGACCACAAGAACAAGAGGTCTCCATTGTTTCTCTTACGTCACTAGATGT 589
Query 591 TACTTCTGGGTAAATTAACCTT 612
|| |||||||||||||||||||
Sbjct 590 TATTTCTGGGTAAATTAACCTT 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29697752343
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5