BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61850.4
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486687 jgi|Araly1|486687|fgenesh2_kg.5__2679__AT3G61850.1 1155 0.0
Ahg935641 jgi|Araly1|935641|scaffold_403629.1 296 3e-79
Ahg889756 jgi|Araly1|889756|Al_scaffold_0007_1742 187 2e-46
> Ahg486687 jgi|Araly1|486687|fgenesh2_kg.5__2679__AT3G61850.1
Length=1502
Score = 1155 bits (625), Expect = 0.0
Identities = 697/730 (95%), Gaps = 12/730 (2%)
Strand=Plus/Plus
Query 33 ttcttcttcttcttcttcttcttcctcttggctgctttctttcATCATCCATAAAGTGAA 92
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 TTCTTC-TCTTCTTCTTCTTCTTCCTCTTGGCTGCTTTCTTTCATCATCCATAAAGTGAA 80
Query 93 AGCTAACGCATAGAGAGAGCCATATCGTCCCaaaaaaagcaaaagtcc--aaaaaaaaaC 150
||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||
Sbjct 81 AGCTAACGCAT--AGAGAGCTATATCGTCCCCAAAAAAGCAAAAGTCCAAAAAAAAAAAC 138
Query 151 -AACTCCAAAACATtctctcttagctctttactctttagtttctctctctctctctgcct 209
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 139 TATCTCCAAAACATTCTCTCTTTGCTCTTTACTCTTTAGTTTCTCTCTCTCTCTCTGCCT 198
Query 210 ttctctttGTTGAAGTTCATGGATGCTACGAAGTGGACTCAGGGTTTTCAAGAAATGATA 269
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 199 TTCTCTTTGTTGAAGTTCATGGATGCTACGAAGTGGACTCAGGGGTTTCAAGAAATGATA 258
Query 270 AACGTAAAGCCAATGGAGCAAATGATTTCTAGcaccaacaacaacacaccgcaacaacaa 329
|||||||| |||||||||||||||||||||||||| ||||| || ||| |||||||||||
Sbjct 259 AACGTAAAACCAATGGAGCAAATGATTTCTAGCACTAACAATAATACATCGCAACAACAA 318
Query 330 ccaacattcatcgccaccaacacaaggccaaacgccaccGCATCCAATGGTGGCTCCGGA 389
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 319 CCAACATTCATCGCCACCAACGCAAGGCCAAGCGCCACCGCATCCAATGGTGGCTCCGGC 378
Query 390 GGAAATACCAACAACACGGCT---ACGATGGAAACTAGAAAGGCGAGGCCACAAGAGAAA 446
||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 379 GGAAATAACAACAACACGGCTACCACGATGGAAACTAGAAAGGCGAGGCCACTAGAGAAA 438
Query 447 GTAAATTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGT 506
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GTAAACTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGT 498
Query 507 CTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCT 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCT 558
Query 567 CTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTTTA 626
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CTTCGAAACGTCCCTGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTTTA 618
Query 627 GCTTCACCTTCTAATCCCAAACTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAA 686
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 619 GCTTCACCTTCTAATCCCAAGCTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAA 678
Query 687 ATCCCTAATAAGTCAAATAAAGATCTCAACTTGCTATCTTTCCCGGTCATGCAAGATCAT 746
||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 679 ATCCCTAATAAGTCAAA-A--GATCTCAACTTGTTGTCTTTCCCGGTCATGCAAGATCAT 735
Query 747 CATCATCATG 756
||||||||||
Sbjct 736 CATCATCATG 745
Score = 1138 bits (616), Expect = 0.0
Identities = 680/709 (96%), Gaps = 11/709 (2%)
Strand=Plus/Plus
Query 837 TCA-GCTCTTGAGCTTCTAAGATCCAATGGAGTCTCTTCAAGAGGCATGAACACGTTCTT 895
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCATGCTCTTGAGCTTCTAAGATCCAATGGAGTCTCTTCAAGAGGCATGAACACGTTCTT 800
Query 896 GCCTGGTCAAATGATGGATTCAAACTCAGTCCTGTACTCATCTTTAGGGTTTCCAACAAT 955
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 801 GCCTGGTCAAATGATGGATTCAAACTCAGTCCTTTACTCATCTTTAGGGTTTCCAGCAAT 860
Query 956 GCCTGATTACAAACAGAGTAATAACAACCTTTCATTCTCCATTGATCATCATCAAGGGAT 1015
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 861 GCCTGATTACAAACAGAGTAATAATAACCTTTCATTCTCCGTTGATCATCATCAAGGGAT 920
Query 1016 TGGACATAACACCATCAACAGTAACCAAAGAGCTCAAGATAACAATGATGACATGAATGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 921 TGGACATAACACCATCAACAGTAACCAAAGAGCTCAAGATAACAATGATGACATGAACGG 980
Query 1076 AGCAAGTAGGGTTTTGTTCCCTTTTTCAGACATGAAAGAGCTTTCAAGCACAACCCAAGA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AGCAAGTAGGGTTTTGTTCCCTTTTTCAGACATGAAAGAGCTTTCAAGCACAACCCAAGA 1040
Query 1136 GAAGAGTCATGGTAATAATACATATTGGAATGGGATGTTCAGTAATACAGGAGGATCTTC 1195
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1041 GAAGAGTCATGGTAATAATACATACTGGAGTGGGATGTTCAGTAATACAGGAGGATCTTC 1100
Query 1196 ATGGTGAAAAAAGGTTAAAAAGAGCTCATGAAC-TATCAGctttcttctctttttctgtt 1254
||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||| |
Sbjct 1101 GTGGTG-AAAAAGGTTAAAAAGAGCTCATGAACTTATTATCTTTCTTCTCTTTTTCT-CT 1158
Query 1255 tttttctcctattttattatagtttttactttgatgatcttttgttttttCTCACATGGG 1314
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TTTTTCTCCTATTTTAGTAGAGTTTTTACTTTGATGATCTTTTGTTTTTTCTCACATGGG 1218
Query 1315 GAACTTTACTTAAAGTTGTCAGAACTTAGTTTACAGATTGTctttttattccttctttct 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GAACTTTACTTAAAGTTGTCAGAACTTAGTTTACAGATTGTCTTTTTATTCCTTCTTTCT 1278
Query 1375 ggttttccttttttcctttttttatcagtctttttAAAATATGTATTTCATAATTGGGTT 1434
|||||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 1279 GGTTTTT-TTTTTTCCTTTTTA-ATCAGTCTTTTCAAAATATATATTTCATAATTGGGTT 1336
Query 1435 TGAT---CATTCATATTTATTAGTATCAAAATAGAGTCTATGTTCATGAGGGAGTGTTAA 1491
| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1337 TCATGGTCATTCATATTTATTAGTATCAAA-TAGAGTCTATGTTCATGAGG-AGTGTTAA 1394
Query 1492 GGGGTGTGAGGGTAGAAGAATAAGTGAATACGAGGGCTTCGTGTGTAAT 1540
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GGGGTGTGAGGGTAGAAGAATAAGTGAATACGAGGGCTTCGTGTGTAAT 1443
> Ahg935641 jgi|Araly1|935641|scaffold_403629.1
Length=1153
Score = 296 bits (160), Expect = 3e-79
Identities = 329/404 (81%), Gaps = 37/404 (9%)
Strand=Plus/Plus
Query 424 GAAAGGCGAGGCCACAAGAGAAAGTAAATTGTCCAAGATGCAACTCAACAAACACAAAGT 483
|||| || || |||||||||||| |||||||||||||||| ||||| || ||||||||||
Sbjct 236 GAAA-GCAAGACCACAAGAGAAACTAAATTGTCCAAGATGTAACTCTACCAACACAAAGT 294
Query 484 TCTGTTATTACAACAACTACAGTCTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAA 543
| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 295 TTTGTTACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAA 354
Query 544 GGTATTGGACCGAAGGTGGCTCTCTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGA 603
||||||||||||||||||| |||||| | || || || || ||||| |||||||||||||
Sbjct 355 GGTATTGGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGCTCAAGAAAGA 414
Query 604 ACAAGAGATC--CT-C-T-A--CA-CCTTTAG-CTTCACCTTCTA-A-T--------CC- 643
|||||||||| || | | | || |||| || | |||| ||| | | ||
Sbjct 415 ACAAGAGATCATCTTCATCAAACATCCTTCAGACGACACCATCTTCACTTGGTTTGACCA 474
Query 644 CAA-ACTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAAATCCCTAATAAGTC-A 701
||| ||||||||||||||||||||| || || ||||||| |||||||| |||||| || |
Sbjct 475 CAACACTTCCAGATCTAAACCCACCAATACTCTTCTCAAACCAAATCCATAATAAATCGA 534
Query 702 AA---T-A--A-A-GATCTCAACTTGCTATCTTTCCCGGTCATGCAAGATCATCATCA-- 751
|| | | | | |||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 535 AAGGGTCATCACAAGATCTCAACTTGTTGTCTTTCCCGGTCATGCAAGATCAACATCAAC 594
Query 752 -TCATGG---TATGTCTCAtttttttCATATGCCCAAGATAGAG 791
||||| ||||||||| ||| |||| ||||| ||||| |||
Sbjct 595 ATCATGTCCATATGTCTCAGTTTCTTCAGATGCCGAAGATGGAG 638
> Ahg889756 jgi|Araly1|889756|Al_scaffold_0007_1742
Length=1041
Score = 187 bits (101), Expect = 2e-46
Identities = 145/167 (87%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 447 GTAAATTGTCCAAGATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGT 506
||||| ||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||
Sbjct 157 GTAAACTGTCCGAGATGTAACTCAACCAACACAAAGTTTTGTTACTACAACAATTATAGT 216
Query 507 CTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCT 566
| |||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 217 TTGACGCAACCAAGATACTTCTGCAAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCG 276
Query 567 CTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGAACAAGAGATC 613
||| | ||| | || || || ||| ||||||||||||||||||||||
Sbjct 277 CTTAGGAACATTCCTGTTGGCGGTGGCTCAAGAAAGAACAAGAGATC 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5