BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61860.1
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486690 jgi|Araly1|486690|fgenesh2_kg.5__2682__AT3G61860.1 1376 0.0
> Ahg486690 jgi|Araly1|486690|fgenesh2_kg.5__2682__AT3G61860.1
Length=1105
Score = 1376 bits (745), Expect = 0.0
Identities = 840/887 (95%), Gaps = 2/887 (0%)
Strand=Plus/Plus
Query 72 GTCGTCGTCGTCGTCTAGGGTTTGTTTTTCGTTTCTTCTCCGATTG-TTCAGAGGAATTG 130
|||||||||||| |||||||||||||| |||||||||||||||| | || |||||| |||
Sbjct 29 GTCGTCGTCGTCCTCTAGGGTTTGTTTATCGTTTCTTCTCCGATCGTTTAAGAGGACTTG 88
Query 131 CGAATTAAGATAAAGATGAGGCCAGTGTTCGTCGGCAATTTCGAGTATGAAACTCGCCAG 190
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 89 CGGATTAAGATAAAGATGAGGCCAGTGTTCGTCGGCAATTTCGAGTACGAAACTCGCCAG 148
Query 191 TCGGATCTGGAACGGTTGTTCGACAAGTATGGGAGAGTCGACCGAGTGGACATGAAATCT 250
|||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 149 TCGGATTTGGAACGATTGTTCGACAAGTATGGGAGAGTCGAGCGAGTGGACATGAAATCT 208
Query 251 GGATATGCTTTTGTGTACTTTGAGGATGAACGTGATGCTGAAGACGCTATTCGCAAACTC 310
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 209 GGATATGCTTTTGTGTACTTTGAGGATGAACGTGATGCTGAAGATGCGATTCGCAAGCTT 268
Query 311 GACAATTTTCCTTTTGGATATGAGAAACGCAGGTTATCAGTTGAATGGGCAAAGGGTGAA 370
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 269 GACAATTTCCCTTTTGGATATGAGAAACGCAGATTATCAGTTGAATGGGCAAAGGGTGAA 328
Query 371 CGTGGCAGGCCTCGTGGTGACGCGAAAGCCCCTTCAAATCTGAAGCCTACAAAGACACTG 430
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 329 CGTGGCAGGCCTCGTGGTGATGCGAAAGCCACTTCAAATCTGAAGCCTACAAAGACACTA 388
Query 431 TTTGTCATTAACTTTGACCCCATTAGAACAAAAGAGCACGACATTGAAAAACACTTTGAG 490
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 389 TTTGTCATTAACTTTGACCCCATTACAACAAAAGAGCACGACATTGAAAAGCACTTTGAG 448
Query 491 CCCTATGGTAAGGTCACCAACGTGCGTATCAGACGCAACTTCTCATTTGTTCAGTTTGAA 550
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 449 CCCTACGGTAAGGTCACCAATGTGCGTATCAGACGCAACTTCTCATTTGTTCAGTTTGAA 508
Query 551 ACACAAGAGGATGCTACAAAAGCCCTTGAAGCTACTCAAAGAAGCAAAATATTGGATAGG 610
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 ACACAAGAAGATGCCACAAAAGCCCTTGAAGCTACTCAAAGAAGCAAAATATTGGATAGG 568
Query 611 GTTGTTTCCGTGGAGTATGCGTTGAAAGATGACGATGAAAGAGATGATCGAAATGGTGGT 670
|||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 569 GTTGTTTCTGTGGAGTATGCCTTGAAGGATGACGATGAAAGAGATGATCGATATGGTGGT 628
Query 671 CGTAGCCCGAGAAGGTCTCTTAGTCCTGTGTATCGTAGGCGTCCAAGTCCAGATTATGGC 730
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 629 CGTAGCCCGAGAAGATCTCTTAGTCCTGTGTACCGTAGGCGTCCAAGTCCAGATTATGGT 688
Query 731 AGGCGTCCAAGCCCTGGTCAGGGTAGGCGTCCAAGTCCAGATTATGGTCGTGCTCGAAGC 790
||||||||||| || | | | ||||||||||||||||||||| |||||||||| ||||||
Sbjct 689 AGGCGTCCAAGTCCAGATTATGGTAGGCGTCCAAGTCCAGATAATGGTCGTGCACGAAGC 748
Query 791 CCAGAATACGACAGATACAAAGGTCCAGCAGCTTATGAAAGACGGAGGAGTCCAGATTAT 850
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 749 CCAGAATACGACAGATACAAAGGTCCAACAGCTTATGAAAGACGCAGGAGTCCAGATTAT 808
Query 851 GGACGAAGGAGTTCTGATTATGGTAGACAAAGGAGCCCTGGTTATGACCGATACAGAAGT 910
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 809 GGACGAAGGAGTTCTGATTATGGTAGACCAAGGAGTCCTGGTTATGACCGATACAGAAGT 868
Query 911 CGTTCTCCAGTCCCAAGAGGAAGACCTTGAT-CAATGCAGAAAACAG 956
|||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 869 CGTTCTCCAGTCCCAAGAGGAAGACCTTGAAACAATGCAGAACACAG 915
Score = 219 bits (118), Expect = 5e-56
Identities = 166/187 (89%), Gaps = 11/187 (6%)
Strand=Plus/Plus
Query 997 TATGTTGTGTTTTGAGTTAGAAGATGCTTTTTGATGTTTTGAAATCCTT-GTTAACTTTG 1055
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 920 TATGTTGTGTTTTGAGTTAGAAGATGCTTTTTGATGTTTTGAAAGCCTTTGTTAACTTTG 979
Query 1056 GGATCTTAGACTTTTATCTTAAAATCAGTAGAAACTTCATAATGGCGCTTT---GTCACG 1112
||||||||||||||||||| ||||| ||||||||| |||| |||||||||| || |||
Sbjct 980 GGATCTTAGACTTTTATCTCAAAATTAGTAGAAACCTCATCATGGCGCTTTTTTGTTACG 1039
Query 1113 ATCTGTTA------CTTGGTTCATATACTCTTTTCATTCGTCATTAATTATTCTAAATCC 1166
|| ||||| |||||||||| ||| ||||| ||||||||| |||||||||||||||
Sbjct 1040 ATATGTTATTATTACTTGGTTCATGTACCCTTTTGATTCGTCAT-AATTATTCTAAATCC 1098
Query 1167 CATATAA 1173
|||||||
Sbjct 1099 CATATAA 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44146337886
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5