BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61880.2
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939260 jgi|Araly1|939260|scaffold_503451.1 2556 0.0
Ahg483830 jgi|Araly1|483830|fgenesh2_kg.4__2890__AT2G46660.1 1101 0.0
> Ahg939260 jgi|Araly1|939260|scaffold_503451.1
Length=1666
Score = 2556 bits (1384), Expect = 0.0
Identities = 1540/1617 (95%), Gaps = 4/1617 (0%)
Strand=Plus/Plus
Query 49 tctctTGTTCCTCTGCATCCATGGCCACCAAGCTCGACACCAGTAGCTTACTTTTGGCCC 108
||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTTTGCTCCTCTGCTTCCATGGCCACCAAGCTCGACACCAGTAGCTTACTTTTGGCCA 60
Query 109 TCTTGTCCAAATGTAGCCTCCTTACTCAAACCAAtcttgctctctctctcctcgtagcct 168
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTCCAAATGTAGCCTCCTTACTCAAACCAATCTTGCTCTCTCTCTCCTCGTAGCCT 120
Query 169 ccctagcttctctcgctctttctctcttcttctggtctcATCCCGGAGGACCCGCATGGG 228
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCTTGCTTCTCTCGCTCTTTCTCTCTTCTTCTGGTCTCATCCCGGAGGACCCGCATGGG 180
Query 229 GAAAGTACTTCCTCCACCGCCGCCGTCAAACCACCGTGATACCCGGGCCAAGAGGCTTAC 288
|||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||
Sbjct 181 GAAAGTACTTCCTCCATCGCCGCCGTCAAACCACCGTAATACCTGGACCAAGAGGCTTAC 240
Query 289 CTTTTGTCGGAAGCATGTCTCTCATGTCAAACACTCTGGCTCACCGTTGCATAGCCGCAA 348
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CTTTTGTCGGAAGCATGTCTCTCATGTCAAGTGCTCTGGCTCACCGTTGCATAGCCGCAA 300
Query 349 CCGCAGAGAAATTTAGAGCCGAACGGTTAATGGCGTTTAGTTTGGGAGAAACTCGCGTGA 408
||||||| |||||| ||||| |||| |||||||||||||| || ||||||||||||||||
Sbjct 301 CCGCAGAAAAATTTGGAGCCAAACGTTTAATGGCGTTTAGCTTAGGAGAAACTCGCGTGA 360
Query 409 TCGTCACGTGCAATCCTGATGTAGCTAAAGAGATTCTAAACAGTCCGGTTTTCGCTGACC 468
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TCGTCACGTGCAATCCTGATGTAGCTAAAGAGATTCTAAACAGTCCGGTTTTTGCTGACC 420
Query 469 GCCCGGTTAAGGAATCAGCTTATTCCCTCATGTTTAACCGTGCTATCGGTTTCGCTCCTT 528
| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||
Sbjct 421 GACCGGTTAAGGAATCAGCTTATTCTCTTATGTTTAACCGAGCTATCGGTTTCGCACCTT 480
Query 529 ACGGCGTTTACTGGCGAACCTTGAGAAAAATCGCGTCTAATCATCTTTTCAGCCCGAAAC 588
||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 481 ACGGCGTTTACTGGCGAACCTTGAGAAGAATCGCGTCTAATCATCTTTTTAGTCCGAAAC 540
Query 589 AGATTAAACGTTCCGAAACGCAGAGAAGCGTGATCGCGAATCAAATCGTGAAGTGTCTCA 648
|||||||||||||||||||||||||| | | |||||| ||||| ||||| ||||||||
Sbjct 541 AGATTAAACGTTCCGAAACGCAGAGACGTGAGATCGCCAATCAGATCGTCAAGTGTCTTG 600
Query 649 CAAAACAGAGTAACACCAAAGGTCTCTGTTTCGCACGTGACTTGATCAAAACGGCATCGC 708
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 601 CAAAACAGAGTAACACCAAAGGTCTCTGTTTTGCACGTGACTTGATCAAAACGGCATCGC 660
Query 709 TTAATAACATGATGTGCTCTGTTTTCGGAAAAGAATACGAGCTTGAGGAA-GAGCATGAA 767
||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct 661 TTAATAACATGATGTGCTCTGTTTTTGGAAAAGAATATGAGCTTGA-GAACGAGCATGAA 719
Query 768 GAAGTGAGTGAGCTACGTGAATTGGTGGAAGAAGGTTATGATTTACTCGGTACACTGAAT 827
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 720 GAAGTGAGTGAGCTACGTGGATTGGTGGAAGAAGGTTATGATTTACTCGGTACACTTAAT 779
Query 828 TGGACCGATCATCTCCCATGGCTCTCTGAATTTGATCCTCAAAGAATCCGGTCTAGATGC 887
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 780 TGGACCGATCATCTCCCATGGCTCTCGGAGTTTGATCCTCAGAGAATCCGGTCTAGATGC 839
Query 888 TCTAATCTCGTCCCAAAAGTAAACCGGTTTGTGAACCGGATTATCTCTGACCACCGTGAA 947
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCCAATCTCGTACCGAAAGTAAACCGGTTTGTGAACCGGATTATCTCTGACCACCGTGAT 899
Query 948 CAAACTCGTGACTCACCGAGTGACTTCGTTGACGTATTGCTCTCTCTCGATGGTCCTGAT 1007
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 CAAACTCGTGACTCACCGAGTGACTTCGTTGACGTATTGCTCTCTCTTGATGGTCCTGAT 959
Query 1008 AAATTATCCGACCCTGATATCATCGCCGTTCTATGGGAAATGATATTCAGAGGAACTGAC 1067
||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 960 AAATTATCCGACCCTGATATCGTCGCTGTTCTCTGGGAAATGATATTCAGAGGAACTGAC 1019
Query 1068 ACGGTGGCTGTTTTGATCGAGTGGATTCTTGCTAGGATGGTCCTTCATCCAGATATTCAA 1127
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1020 ACGGTGGCTGTTTTGATCGAGTGGATTCTTGCTAGGATGGTCCTACATCCAGATATTCAA 1079
Query 1128 TCGACGGTTCACAATGAGCTTGATCAAATCGTGGGACGATCAAGGGCTGTCGAAGAGTCT 1187
|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 1080 TCGACGGTTCACAATGAGCTTGATCAAATCGTGGGAAGATCAAGAGCCGTCGAAGAGTCT 1139
Query 1188 GACGTGGTGTCTCTAGTA-TATCTAACGGCTGTGGTGAAAGAAGTCTTGAGGCTTCACCC 1246
||||||| ||| ||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 GACGTGGCATCTTTAG-AGTATCTAACGGCTGTTGTGAAAGAAGTCTTGAGGCTTCACCC 1198
Query 1247 GCCAGGCCCACTACTCTCATGGGCCCGTTTAGCAATCACAGACACGATCATCGACGGTCG 1306
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1199 GCCAGGCCCACTACTCTCTTGGGCCCGTTTAGCAATCACAGATACGATCATCGACGGTTG 1258
Query 1307 TCGTGTTCCGGCGGGGACCACCGCAATGGTGAACATGTGGGCTATTGCACACGATCCACA 1366
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1259 TCGTGTTCCGGCTGGGACCACCGCAATGGTGAACATGTGGGCTATAGCACACGATCCACA 1318
Query 1367 CGTGTGGGAGAATCCGTTGGAGTTTAAACCCGAACGTTTTGTAGCCAAGGAAGGTGAGGT 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CGTGTGGGAGAATCCGTTGGAGTTTAAACCCGAACGTTTTGTAGCCAAGGAAGGTGAGGT 1378
Query 1427 TGAGTTCTCGGTTCTTGGGTCTGATTTGAGGCTTGCACCGTTCGGGTCCGGTCGTCGGGT 1486
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1379 TGAGTTCTCGGTTCTTGGGTCGGATTTGAGGCTAGCACCGTTCGGGTCGGGTCGTCGGGT 1438
Query 1487 TTGCCCCGGGAAGAATCTTGGTTTGACCACCGTGACGTTTTGGACTGCGACGCTTTTGCA 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTGCCCCGGGAAGAATCTTGGTTTGACCACCGTGACGTTTTGGACTGCGACGCTTTTGCA 1498
Query 1547 TGAGTTTGAATGGCTGACGCCGTCCGATGAGAAGACCGTTGACTTGTCCGAGAAACTGAG 1606
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TGAGTTTGAATGGCTAACATCGTCCGATGAGAAGACCGTTGACTTGTCCGAGAAACTGAG 1558
Query 1607 GCTCTCGTGTGAGATGGCTAATCCTCTTGCTGCTAAATTACGCCCCAGGCGCAGTTT 1663
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1559 GCTCTCGTGTGAGATGGCTAATCCTCTTGCTGGTAAATTACGCCCCAGGCGTAGTTT 1615
> Ahg483830 jgi|Araly1|483830|fgenesh2_kg.4__2890__AT2G46660.1
Length=1817
Score = 1101 bits (596), Expect = 0.0
Identities = 1286/1610 (80%), Gaps = 84/1610 (5%)
Strand=Plus/Plus
Query 95 CTTACT-TTTGGCCCTCTTGTCCAAATGTAGCCTCCTTA-CTCAAACCAAtc-ttgctct 151
|||| | ||| ||||| ||||||||||| ||| | || | | ||||| || | | ||| |
Sbjct 93 CTTAATCTTT-GCCCTTTTGTCCAAATGCAGCGTTCTAAGC-CAAACTAA-CATCGCTTT 149
Query 152 ctctctcctcgtagcc-tccctagcttct--ctcgctc-tttctctcttcttctgg-tct 206
|||||||||| ||| | | | | ||| ||||| | | ||||||||||||||| ||
Sbjct 150 CTCTCTCCTC---GCCGTTACAATCATCTGGCTCGC-CGTCTCTCTCTTCTTCTGGACCT 205
Query 207 cATCCCGGAGGACCCGCATGGGG-AAAGT--ACTTCC-TC----CACCGCC-G-CCGT-C 255
||||||| ||||| || ||||| ||| | ||||| || || || | | | |
Sbjct 206 -ATCCCGGTGGACCTGCTTGGGGTAAATTCCTCTTCCGTCGGTTTACATCCGGTTCATAC 264
Query 256 -AAACC---ACCGTGATACCCGGGCCAAGAGGCTTACCTTTTGTCGGAAGCATGTCTCTC 311
||||| | ||| || ||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct 265 AAAACCGGAAACGTTATTCCCGGTCCAAGAGGCTTGCCTTTGGTTGGAAGCATGTCACTC 324
Query 312 ATGTCAAACACTCTGGCTCACCGTTGCATAGCCGCA-ACCGCAGAGAAATTTAGAGCCGA 370
||||||| |||||| |||||||| | || || | | || |||||||| ||||| |
Sbjct 325 ATGTCAAGCACTCTAGCTCACCGACGAATCGCTG-ATGTTGCTGAGAAATTCGGAGCC-A 382
Query 371 A-CGGTTAATGGCGTTT-AGTTTGGGAGAAACTCGCGTGATCGTCACGTGCAATCCTGAT 428
| || | ||||| ||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct 383 AGAGGCTCATGGC-TTTCAGCTTAGGAGAGACTCGCGTGATCGTCACGTGCAATCCCGAC 441
Query 429 GTAGCTAAAGAGATTCTAAACAGTCCGGTTTTCGCTGACCGCCCGGTTAAGGAATCAGCT 488
|| || ||||||||||| || | |||||||| |||||||| |||||||| ||||| |||
Sbjct 442 GTCGCGAAAGAGATTCTGAATTGCCCGGTTTTTGCTGACCGACCGGTTAAAGAATCGGCT 501
Query 489 TATTCCCTCATGTTTAACCGTGCTATCGGTTTCGCTCCTTACGGCGTTTACTGGCGAAC- 547
|| || || ||||||||| | || || ||||| || || |||| ||||||||||||||
Sbjct 502 TACTCTCTGATGTTTAACAGAGCAATTGGTTTTGCACCACACGGTGTTTACTGGCGAACG 561
Query 548 CTTGAGAAAAATCGCGTCTAATCATCT-TTTCAGCCCGAAACAGATTAAACGTTCCGAAA 606
||| | ||||| || || ||||| ||| || || ||||| || | ||| |||| |
Sbjct 562 CTT-CGCCGTATCGCTTCGAACCATCTCTTT-AGTCCAAAACAAATCAGACGAGCCGAGA 619
Query 607 CGCAGAGAAGCGTG--ATCGCGAATCAAATCG-TGAAGTGTCTCACAAAACAGAGTAACA 663
||||| | ||| | ||||| | || || | || || ||| |||||||| | |
Sbjct 620 CGCAGCG--GCGGGAAATCGCTAGCCAGATGGTTG-GGTTTCTTGGAAAACAGACT---A 673
Query 664 CCAAAGGTCTCTGTTTCGCACGTGACTTGATCAAAACGGCATCGCTTAATAACATGATGT 723
|| || |||||||| | ||||| ||| | |||||||| |||||||| ||||||||||
Sbjct 674 GTAACGGACTCTGTTTTGTTCGTGAGTTGCTTAAAACGGCGTCGCTTAACAACATGATGT 733
Query 724 GCTCTGTTTTCGGAAAAGAATACGAGCTTGAGGAAGAGCATGAAGAAGTGAGTGAGCTAC 783
|||||||||||||| |||| || |||||| | | | || || | || |||| |||
Sbjct 734 GCTCTGTTTTCGGACAAGAGTATGAGCTT---G-A-A-CA-AAACCA-TG-TTGAGTTAC 784
Query 784 GTGAATTGGTGGAAGAAGGTTATGATTTACTCGGTACACTGAATTGGACCGATCATCTCC 843
|||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct 785 GTGAATTGGTCGAACAAGGTTATGATTTACTCGGAACATTGAATTGGACCGATCATCTTC 844
Query 844 CATGGCTCTCTGAATTTGATCCTCAAAGAATCCGGTCTAGATGCTCTA-ATCTCGTCCCA 902
| ||||| | ||||||||||||||| |||||||||||||||| || | | ||||| ||
Sbjct 845 CTTGGCTATTTGAATTTGATCCTCAGGGAATCCGGTCTAGATGTTCCACA-CTCGTACCG 903
Query 903 AAAGTAAACCGGTTTGTGA-ACCGGATTATCTCTGACCACCGTGAACAAACTC-GTGACT 960
|| |||||||||||||| | ||||||||| ||||| |||||| | ||||| | |||| |
Sbjct 904 AAGGTAAACCGGTTTGT-ATCCCGGATTATATCTGAACACCGTCATCAAAC-CGGTGATT 961
Query 961 CACCGAGTGACTTCGTTGACGTATTGCTCTCTCTCGATGGTCCTGATAAATTATCCGACC 1020
| || |||| ||||| ||||| |||||||| ||| ||||| | ||||||||||| ||||
Sbjct 962 CGCCTCGTGATTTCGTCGACGTTTTGCTCTCCCTCCATGGTTCAGATAAATTATCGGACC 1021
Query 1021 CTGATATCATCGCCGTTCTATGGGAAATGATATTCAGAGGAACTGACACGGTGGCTGTTT 1080
| || || ||||||||||| ||||| ||||||||||||||||| ||||| || || ||||
Sbjct 1022 CGGACATAATCGCCGTTCTTTGGGAGATGATATTCAGAGGAACAGACACAGTTGCGGTTT 1081
Query 1081 TGATCGAGTGGATTCTTGCTAGGATGGTCCTTCATCCAGATATTCAATCGACGGTTCACA 1140
| || |||||| | || |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1082 TAATTGAGTGGGTCCTCGCTAGGATGGTCCTTCATCCAGATATTCAATCAACGGTACAAA 1141
Query 1141 ATGAGCTTGATCAAATCGTGGGACGATCAAGGGCTGTCGAAGAGTCTGACGTGG-TGTCT 1199
| ||||| |||||||| || ||| |||||| || || || || |||||| ||| | ||
Sbjct 1142 ACGAGCTAGATCAAATAGTCGGAAAATCAAGAGCCGTAGATGAATCTGACTTGGCT-TCA 1200
Query 1200 CTAG-TATATCTAACGGCTGTGGTGAAAGAAGTCTTGAGGCTTCACCCGCCAGGCCCACT 1258
|| | |||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1201 CTTCCT-TATCTAACGGCTGTAGTGAAAGAAGTATTGAGGCTTCATCCTCCAGGCCCACT 1259
Query 1259 ACTCTCATGGGCCCGTTTAGCAATCACAGACACGATCATCGACGGTCGTCGTGTTCCGGC 1318
|| |||||||||||||| || || |||||||||||| | || ||||||| |||||||||
Sbjct 1260 TCTATCATGGGCCCGTTTGGCCATAACAGACACGATCGTTGATGGTCGTCTTGTTCCGGC 1319
Query 1319 GGGGACCACCGCAATGGTGAACATGTGGGC--TATTGCACACGATCCACACGTGTGGGA- 1375
|||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 1320 AGGGACCACAGCAATGGTGAACATGTGGGCCGTATCGCAT--GATCCACACGTGTGGGTT 1377
Query 1376 GAATCCGTTGGAGTTTAAACCCGA-ACGTTTTGTAGCCAAGGAAGGTGAGGTTGAGTTCT 1434
|| ||| |||||||||||||| || | ||| || || || |||||||||| ||||| |
Sbjct 1378 GA-TCCTTTGGAGTTTAAACCTGAGAGGTTC-GTGGCAAAACAAGGTGAGGTGGAGTTTT 1435
Query 1435 CGGTTCTTGGGTCTGATTTGAGGCTTGCACCGTTCGGGTCCGGTCGTCGGGTTTGCCCCG 1494
| ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1436 CAGTTCTCGGGTCGGATTTGAGACTTGCACCGTTCGGGTCGGGTCGTCGGGTTTGCCCCG 1495
Query 1495 GGAAGAATCTTGGTTTGACCACCGTGACGTTTTGGACTGCGACGCTT-TTGCATGAGTTT 1553
|||| |||||||||||||| ||||| ||||||||||| ||| || || || |||||||||
Sbjct 1496 GGAAAAATCTTGGTTTGACTACCGTTACGTTTTGGACGGCGGCG-TTGTTACATGAGTTT 1554
Query 1554 GAATGGCTGACGCCGTCCGATGAGAA-GACCGTTGACTTGTCCGAGAAACTGAGGCTCTC 1612
|||||| ||| | |||||||| ||| | | |||||||| || |||||||||||||| ||
Sbjct 1555 GAATGGG-GAC-C-GTCCGATGGGAACGGC-GTTGACTTATCTGAGAAACTGAGGCTTTC 1610
Query 1613 GTGTGAGATGGCTAATCCTCTTGCTGCTAAATTACGCCCCAGGCGCAGTT 1662
|||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 1611 TTGTGAGATGGCTAATCCTCTTGCTGCTAAATTGCGTCGTAGGCGCAGTT 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69362336145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5