BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61890.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486694 jgi|Araly1|486694|fgenesh2_kg.5__2686__AT3G61890.1 1570 0.0
> Ahg486694 jgi|Araly1|486694|fgenesh2_kg.5__2686__AT3G61890.1
Length=978
Score = 1570 bits (850), Expect = 0.0
Identities = 936/978 (96%), Gaps = 4/978 (0%)
Strand=Plus/Plus
Query 13 aaaaaaGAAACAAATAATTCCAAAACCTTCTCTCTTAATCAAAATCAAGAAACTTACAAG 72
||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1 AAAGAAGAAACAAATAATTCCAAAACCTTCTCTCTTAATCGAAATCAAGAAACTTGCAAG 60
Query 73 ATCTGGTGAAAACCATGGAAGAAGGAGATTTTTTCAACTGCTGTTTCAGCGAGATTAGTA 132
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 61 ATCTGGTGAAAACCATGGAAGAAGGAGATTTTTTCAACTGCTGCTTCAGCGAGATTAATA 120
Query 133 GTGGCATGACCATGAATAAGAAGAAGAT---GAAGAAGAGCAATAACCAAAAGAGGTTTA 189
|||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 121 GTGGCATGACCATGAATAAGAAGAAGATGAAGAAGAAGAGCAATAGCCAGAAGAGGTTTA 180
Query 190 GCGAGGAACAGATCAAGTCACTTGAGCTTATATTTGAGTCTGAGACGAGGCTTGAGCCGA 249
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 181 GCGAGGAACAGATCAAGTCACTTGAGCTTATATTTGAGTCCGAGACGAGGCTTGAACCGA 240
Query 250 GGAAGAAGGTTCAGGTAGCTAGAGAGCTAGGGCTGCAACCAAGACAAGTGGCTATATGGT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAAGAAGGTTCAGGTAGCTAGAGAGCTAGGGCTGCAACCAAGACAAGTGGCTATATGGT 300
Query 310 TTCAAAACAAGAGGGCTCGATGGAAAACTAAGCAACTTGAGAAAGAGTATAACACTCTTA 369
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TTCAGAACAAGAGGGCTCGTTGGAAAACTAAGCAACTTGAGAAAGAGTATAACATTCTTC 360
Query 370 GAGCCAATTACAACAATTTGGCTTCACAATTTGAAATCATGAAGAAAGAAAAGCAATCTC 429
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATCCAATTACAACAATTTGGCTTCACAATTTGAAATCATGAAGAAAGAAAAGCAATCTC 420
Query 430 TGGTCTCTGAGCTGCAGAGACTAAACGAAGAGATGCAAAGGCCTAAAGAAGAAAAGCATC 489
| ||||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 421 TTGTCTCTGAGTTGCAGAGACTAAATGAGGAGATGCAAAAGCCTAAAGAAGAAAAGCATC 480
Query 490 ATGAGTGTTGTGGTGATCAAGGACTGGCTCTAAGCAGCAGCACAGAGTCGCATAATGGAA 549
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 481 ATGAGTGTTGTGGTGATCAAGGAGTGGCTCTAAGCAGCAGCACAGAGTTGCATAATGGAA 540
Query 550 AGAGTGAGCCAGAAGGGAGGTTAGACCAAGGGAGTGTTCTATGTAATGATGGTGATTACA 609
||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 541 AGAGTGAGCCAGAAGTGAGGTTAAACCAAGGGATTGTTCTATGTGATGATGGTGATTACA 600
Query 610 ACAACAACATTAAAACAGAGTATTTTGGGTTCGAGGAAGAGACTGATCATGAGCTGATGA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 ACAACAACATTAAAACAGAGTATTTTGGGTTCGAGGAAGAGACTGATCATGAGCTCATGA 660
Query 670 ACATTGTGGAGAAAGCTGATGATAGTTGCTTGACATCTTCTGAGAATTGGGGAGGTTTCA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACATTGTGGAGAAAGCTGATGATAGTTGCTTGACATCTTCTGAGAATTGGGGAGGTTTCA 720
Query 730 ATTCTGATTCTCTCTTAGACCAATCTAGCAGCAATTACCCTAACTGGTGGGAGTTTTGGT 789
||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 721 ATTCTGATTCTCTGTTAGACCAATCTAGCAGCCATTACCCTAATTGGTGGGAGTTTTGGT 780
Query 790 CATAAAAGCATATAAGaaaaaaaCAGAACATAAGCGAAGAGAAAGAGTGTGAATAGTTTG 849
||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 781 CATAAAAACATATAAGAAAGAAACAAAACATAAGTGAAGAGAAAGAGTGTGAATAGTTTG 840
Query 850 TAAATTATGTGTTAAGAAAAATAAATTT-AGTTTAGTTTAAATCTTGTTTCGATCTATGT 908
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 TAGATTATGTGTTAAGGAAAATAAATTTTAGTTTAGTTTAAATCTTGTTTCGATCTATGT 900
Query 909 ATCTACTATGTTCAATACTCTTTGTAGCTAATTAGTAGCTTATAATGAGACTAGAAAAGT 968
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 ATCTACTATGTTCAATACTCTTTGTAGCTAATTAGTAGCTTATGATGAGACTAGAAAAGT 960
Query 969 TTTGAAGTCACCAAGGTT 986
|||||||||| || ||||
Sbjct 961 TTTGAAGTCATCATGGTT 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5