BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G61900.1

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324630 jgi|Araly1|324630|fgenesh1_pm.C_scaffold_5002174           610    2e-174


> Ahg324630 jgi|Araly1|324630|fgenesh1_pm.C_scaffold_5002174
Length=420

 Score =  610 bits (330),  Expect = 2e-174
 Identities = 392/419 (94%), Gaps = 15/419 (4%)
 Strand=Plus/Plus

Query  1    ATGGGTTCCGGAGAAAAAATCCTCAAGAGCGTCCATTCAAACCGTCCCAATAACGTGAAA  60
            ||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||||
Sbjct  1    ATGGGTTCCGGAGAAAAAATCTTCAAGAGCGTCCATTCAAATCGTTCTAATAACGTGAAA  60

Query  61   AGCAATAGCAAACATGGGATCAAAGATGTGCCAAAAGGGTGTTTAGCAATCAAAGTGGGA  120
            |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   AGCAATAGCAAACAAGGAATCAAAGATGTTCCAAAAGGGTGTTTAGCAATCAAAGTGGGA  120

Query  121  TCAAAAGAAGAGGAGAAACAGAGATTTGTTGTTCCTGTTTTTTATTTTAACCATCCATTG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCAAAAGAAGAGGAGAAACAGAGATTTGTTGTTCCTGTTTTTTATTTTAACCATCCATTG  180

Query  181  TTCATGCAACTCCTAAGGGAAGCAGAGGAAGAGTATGGATTCGAGCAGAAAGGTACCATC  240
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTCATGCAACTCTTAAGGGAAGCAGAGGAAGAGTATGGATTCGAGCAGAAAGGTACCATC  240

Query  241  ACAATCCCTTGCCACGTGGAAGTTTTTCGATATGTTCAAGACATGATCAACAGAGAGAGA  300
            |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  241  ACAATCCCTTGCCACGTGGATGTTTTTCGATACGTTCAAGACATGATCAACAGAGAGAGA  300

Query  301  TCGCTtgatgatgatgatgatgCAAGCAAGCAAACGGGT-T--------GT----G-G-A  345
            |||||||||||||||||||||||||||||||||| |||| |        ||    | | |
Sbjct  301  TCGCTTGATGATGATGATGATGCAAGCAAGCAAAAGGGTATAAAAATTTGTCTTTGTGGA  360

Query  346  GCCAAACACGGCCTAACCCACAAGATTAGGAGTAGAAGTTCTAGTGGTGTTTGGAAATA  404
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  361  GCCAAACACGGCCTAACCCACAAGATTTGGAGTAGAAGTTCTAGTGGTGTTTGGAAATA  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14766212943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5