BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61910.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg939264 jgi|Araly1|939264|scaffold_503455.1 1325 0.0 Ahg935661 jgi|Araly1|935661|scaffold_403649.1 420 1e-116 Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619 254 1e-66 Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 195 9e-49 > Ahg939264 jgi|Araly1|939264|scaffold_503455.1 Length=1046 Score = 1325 bits (717), Expect = 0.0 Identities = 918/1009 (91%), Gaps = 37/1009 (4%) Strand=Plus/Plus Query 10 TTCTTCTCCTTTTTCTATCTTTAGCAATGAACATATCAGTAAACGGACAGTCACAAGTAC 69 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 TTCTTCTTCTTTTTCTATCTTTAGCAATGAACATATCAGTAAACGGACAGTCACAAGTGC 60 Query 70 CTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGCTCTTGAAGTATTACCTCCGCAAGA 129 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 61 CTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGCTCTTGAACTATTACCTTCGCAAGA 120 Query 130 AAATCTCTAACATCAAGATCGATCTCGATGTTATTCCTGACATTGATCTCAACAAGCTCG 189 ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 121 AAATCTCTAGTATCAAGATCGATCTCGATGTTATTCCTGACGTTGATCTCAACAAGCTCG 180 Query 190 AGCCTTGGGATATTCAAGAGATGTGTAAGATTGGAACGACGCCGCAAAACGATTGGTACT 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGCCTTGGGATATTCAAGAGATGTGTAAGATTGGAACGACGCCGCAAAACGATTGGTACT 240 Query 250 T-TTATAGCCATAAGGACAAGAAGTATCCCACCGGGACTAGAACCAACAGAGCCACCACG 308 | || ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| Sbjct 241 TCTT-TAGCCATAAGGACAAGAAGTATCCCACGGGGACTAGAACTAACCGAGCCACCACG 299 Query 309 GTCGGATTTTGGAAAGCGACGGGACGTGACAAGACCATATATACCAATGGTGATAGAATC 368 || |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| Sbjct 300 GTGGGATTTTGGAAAGCTACGGGACGTGACAAGATCATATATACCAATGGTGATAGGATC 359 Query 369 GGGATGCGAAAGACGCTTGTCTTCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGAT 428 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GGGATGCGAAAAACGCTAGTCTTCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGAT 419 Query 429 TGGATCATGCACGAATATAGACTCGACGAGAGTGTATTAATCTCCTCGTGTGGCGATCAT 488 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 420 TGGATCATGCACGAATATAGACTCGACGAGAGTGTATTAATCTCCTCGAGTGGCAATGAT 479 Query 489 GACGTCAACGTAGAAACGTGTGATGTCATAGGAAGTGACGAAGGATGGGTGGTGTGTCGT 548 | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 480 GGCGTCACCGTAGAAACGTGTGATGTCATAGGAGGTGACGAAGGATGGGTGGTGTGTCGT 539 Query 549 GTTTTCAAGAAAAATAACCTTTGCAAAAACATGATTAGTAGTAGCCCGGCGAGTTCGGTG 608 ||||||||||| || | ||||||||||||||||||||| || ||||| | | Sbjct 540 GTTTTCAAGAAGAAGAGCCTTTGCAAAAACATGATTAGCAG---CCCGG----T--G--- 587 Query 609 AAAACGCCGTCGTTCAATG-AGGAGACTATCGAGC-AACTTCTCGAAGTTATGGGGCAAT 666 |||||| |||||||||| | || |||||||||||| || |||| |||| ||||||||||| Sbjct 588 AAAACGTCGTCGTTCAACGTAG-AGACTATCGAGCGAA-TTCTTGAAGATATGGGGCAAT 645 Query 667 CTTGTAAAGGAGAGATAGTTTTAGACCCTTTCTTAAAACTCCCTAACCTCGAATGCCATA 726 ||||||||| || |||| ||| ||||||||||||||||||||||||| || | | Sbjct 646 CTTGTAAAGAAGTGATAATTTCAGACCCTTTCTTAAAACTCCCTAAC----AA--C-A-- 696 Query 727 ACAACACCACCATCACGAGTTATCAGTGGTTAATCG-ACGACCAAGTCAACAACTGCCAC 785 | ||| | ||||||| ||||||| |||||| || |||||| |||||||||||||||| Sbjct 697 -C--CAC-A--ATCACGAATTATCAGCGGTTAA-CGGACGACCGAGTCAACAACTGCCAC 749 Query 786 GTCAGCAAAGTTATGGATCCCAGCTTCATCACTAGCTGGGCCGCTTTGGATCGGCTCGTT 845 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 750 GTCAGCAAAGTTATGGATCCCAGCTTCGTCACAAGCTGGGCCGCTTTGGATCGGCTCGTT 809 Query 846 GCCTCACAGTTAAATGGGCCCAACTCGTATTCAATACCAGCCGTTAATGAGACTTCACAA 905 ||||| || ||||||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct 810 GCCTCGCAACTAAATGGGCCCAACTCGTATTCAATCCCAGCCGTCAATGAGACCTCACAA 869 Query 906 TCACCGTATC-ATGGACTGAACCGGTCCGGTTGTAATACCGGTTTAACACCAGATTACTA 964 ||||||| || ||||||| ||||||||||||| ||||||||||||||| || ||||| || Sbjct 870 TCACCGT-TCCATGGACTAAACCGGTCCGGTTATAATACCGGTTTAACGCCTGATTATTA 928 Query 965 TATACCGGAGATTGATTTATGGAACGAGGCAGATTTCGCGAGAACGACA 1013 |||||||||||| |||||||||||||| ||||||||| |||||||||| Sbjct 929 TATACCGGAGATGGATTTATGGAACGATACAGATTTCGGGAGAACGACA 977 Score = 63.9 bits (34), Expect = 3e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 1025 GAACGGTAGTGGATAACGGAAATGGAAGAGAGGAAGT 1061 |||||||| |||||||||||||||||||||||||||| Sbjct 1010 GAACGGTATTGGATAACGGAAATGGAAGAGAGGAAGT 1046 > Ahg935661 jgi|Araly1|935661|scaffold_403649.1 Length=1108 Score = 420 bits (227), Expect = 1e-116 Identities = 360/424 (85%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 36 ATGAACATATCAGTAAACGGACAGTCACAAGTACCTCCTGGCTTTAGGTTTCACCCAACC 95 |||| ||||||||| |||||||| || ||||| |||||||| ||||||||||| |||||| Sbjct 33 ATGAGCATATCAGTGAACGGACAATCTCAAGTGCCTCCTGGGTTTAGGTTTCATCCAACC 92 Query 96 GAGGAAGAGCTCTTGAAGTATTACCTCCGCAAGAAAATCT-CTAACATCAAGATCGATCT 154 ||||||||||| ||| ||||||| ||||| |||||| | | || |||| |||| ||||| Sbjct 93 GAGGAAGAGCTGTTGCAGTATTATCTCCGAAAGAAAGT-TAATAGCATCGAGATTGATCT 151 Query 155 CGATGTTATTCC-TGACATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 213 ||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 152 TGATGTCA-TCCGCGACGTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 210 Query 214 GTAAGATTGGAACGACGCCGCAAAACGATTGGTACTT-TTATAGCCATAAGGACAAGAAG 272 |||| || ||||| ||||| |||||||| ||||| || || |||||| |||||||| || Sbjct 211 GTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTT-TAGCCACAAGGACAAAAAA 269 Query 273 TATCCCACCGGGA-CTAGAACCAACAGAGCCACCACGGTCGGATTTTGGAAAGCGACGGG 331 ||||| || |||| | ||||| ||||||||||| ||| ||||||||||||||| || || Sbjct 270 TATCCGAC-GGGAACGAGAACTAACAGAGCCACTGCGGCCGGATTTTGGAAAGCAACTGG 328 Query 332 ACGTGACAAGACCATATATACCAATGGT-GATAGAATCGGGATGCGAAAGACGCTTGTCT 390 || ||||||| |||||||| |||||| | ||| || |||||| ||||||| ||||| | Sbjct 329 CCGCGACAAGATCATATATAGCAATGGCCG-TAGGATTGGGATGAGAAAGACTCTTGTTT 387 Query 391 TCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGAC 450 |||||||||| ||||| ||||| || || ||||| |||||||||||||| |||||||||| Sbjct 388 TCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGAC 447 Query 451 TCGA 454 |||| Sbjct 448 TCGA 451 > Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619 Length=1092 Score = 254 bits (137), Expect = 1e-66 Identities = 331/420 (79%), Gaps = 32/420 (8%) Strand=Plus/Plus Query 54 GGACAGTCACAAGTACCTCCTGGCTTT-AGGTTTCA-CCCAACCGAGGAAGAGC-TCTTG 110 ||||| ||| |||| ||||| || ||| || || || ||| ||||| ||||| | || | Sbjct 34 GGACAATCAAAAGTGCCTCCAGG-TTTCAGATTCCATCCC-ACCGAAGAAGAACTTC-TC 90 Query 111 AAGTATTACCTCCGCAAGAAAATCTCTAAC-ATC--AAGATCGATCTCGATGTTATTCCT 167 | || || ||||| ||| ||| | |||| || ||||||||||| ||||| |||| | Sbjct 91 CATTACTATCTCCGTAAG-AAA-GT-TAACTCTCAGAAGATCGATCTTGATGTCATTCGT 147 Query 168 GACATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAG-ATGTGTAAGATT-GGAA 225 || ||||||||||||||||||||||||||||||||||||||| | |||| || | || Sbjct 148 GAAATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGGAA-TGTA-GAATCGGTT 205 Query 226 CGACGCCGCAAAACGATTGGTACTT-TTATAGCCATAAGGACAAGAAGTATCCCACCGGG 284 ||||||| |||||||| |||||||| || ||||| ||||||||||||||||| |||||| Sbjct 206 CGACGCCACAAAACGACTGGTACTTCTTC-AGCCACAAGGACAAGAAGTATCCAACCGGG 264 Query 285 ACTAGAACCAACAGAGCCACCA--CGGTCGGATTTTGGAAAGCGACGGGACGTGACAAGA 342 || || || ||| | || || | || | |||||||||||||| || ||||||||||||| Sbjct 265 ACCAGGACAAACCGGGCAAC-AGTCGCT-GGATTTTGGAAAGCTACCGGACGTGACAAGA 322 Query 343 CCATAT--A-TACCAATG-GTGATAGAATCGGGAT-GCGAAAGACGCTTGTCTTCTACAA 397 ||| | | | || | | || || | || || | | ||||| || || |||||||| Sbjct 323 TCATCTGCAGTTGCA-TCCG-GAG-GATT-GG-ATTGAGGAAGACACTCGTATTCTACAA 377 Query 398 AGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGACTCGACGA 457 ||| |||| ||||| |||||||||||||||||||||||||| |||||| | |||||||| Sbjct 378 AGGAAGAGCTCCTCACGGTCAGAAATCCGATTGGATCATGCATGAATATCGCCTCGACGA 437 > Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 Length=1209 Score = 195 bits (105), Expect = 9e-49 Identities = 306/400 (77%), Gaps = 26/400 (7%) Strand=Plus/Plus Query 60 TCACAAGTACCTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGC-TCTTGAAGTATTA 118 |||||||||||||| ||||| || ||||| || || || ||||| | | ||| | || || Sbjct 13 TCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTTGTTG-ACTACTA 71 Query 119 CCTCCGCAAGAAAATCTCTAACATC--A-AG-ATCGATCTCGATGTT-ATTC-CTGACAT 172 || | | ||||| || |||| | || || || ||||| || | || |||| | Sbjct 72 -CT-TG-AGGAAAA-AAGTAGCATCGAAGAGAATAGAAATCGAT-TTCA-TCAATGACGT 125 Query 173 TGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGTGTAAGATTGG-AACGACGC 231 |||||| ||||| | ||||| |||||| |||||||| | || ||||| || ||||| | Sbjct 126 TGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAACGAAG- 184 Query 232 CGCAAAACGATTGGTACTT-TTATAGCCATAAGGACAAGAAGTATCCCACCGGGACTAGA 290 ||||| ||| |||||||| || ||||||||| |||||||||||||| || || ||| || Sbjct 185 AGCAAAGCGAATGGTACTTCTT-TAGCCATAAAGACAAGAAGTATCCTACAGGAACTCGA 243 Query 291 ACCAACAGAGCCACCACGGTC-GGATTTTGGAAAGCGACGGGACGTGACAAGACCATATA 349 ||||| ||||| || | | | ||||| |||||||| || ||| | |||||| | ||||| Sbjct 244 ACCAATAGAGCGACGAAAG-CAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATATA 302 Query 350 TACCAATGGTGATAG---AATCGGGATGCGAAAGACGCTTGTCTTCTACAAAGGTCGAGC 406 || || | |||| ||||| ||| | ||||| ||||| || |||||||| |||| Sbjct 303 TA-TAA--GACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGC 359 Query 407 CCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATAT 446 ||| |||| |||||||||||||||||||||||||||||| Sbjct 360 CCCAAATGGACAGAAATCCGATTGGATCATGCACGAATAT 399 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5