BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61910.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939264 jgi|Araly1|939264|scaffold_503455.1 1325 0.0
Ahg935661 jgi|Araly1|935661|scaffold_403649.1 420 1e-116
Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619 254 1e-66
Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1 195 9e-49
> Ahg939264 jgi|Araly1|939264|scaffold_503455.1
Length=1046
Score = 1325 bits (717), Expect = 0.0
Identities = 918/1009 (91%), Gaps = 37/1009 (4%)
Strand=Plus/Plus
Query 10 TTCTTCTCCTTTTTCTATCTTTAGCAATGAACATATCAGTAAACGGACAGTCACAAGTAC 69
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTCTTCTTCTTTTTCTATCTTTAGCAATGAACATATCAGTAAACGGACAGTCACAAGTGC 60
Query 70 CTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGCTCTTGAAGTATTACCTCCGCAAGA 129
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 61 CTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGCTCTTGAACTATTACCTTCGCAAGA 120
Query 130 AAATCTCTAACATCAAGATCGATCTCGATGTTATTCCTGACATTGATCTCAACAAGCTCG 189
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AAATCTCTAGTATCAAGATCGATCTCGATGTTATTCCTGACGTTGATCTCAACAAGCTCG 180
Query 190 AGCCTTGGGATATTCAAGAGATGTGTAAGATTGGAACGACGCCGCAAAACGATTGGTACT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCCTTGGGATATTCAAGAGATGTGTAAGATTGGAACGACGCCGCAAAACGATTGGTACT 240
Query 250 T-TTATAGCCATAAGGACAAGAAGTATCCCACCGGGACTAGAACCAACAGAGCCACCACG 308
| || ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 241 TCTT-TAGCCATAAGGACAAGAAGTATCCCACGGGGACTAGAACTAACCGAGCCACCACG 299
Query 309 GTCGGATTTTGGAAAGCGACGGGACGTGACAAGACCATATATACCAATGGTGATAGAATC 368
|| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 300 GTGGGATTTTGGAAAGCTACGGGACGTGACAAGATCATATATACCAATGGTGATAGGATC 359
Query 369 GGGATGCGAAAGACGCTTGTCTTCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGAT 428
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGGATGCGAAAAACGCTAGTCTTCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGAT 419
Query 429 TGGATCATGCACGAATATAGACTCGACGAGAGTGTATTAATCTCCTCGTGTGGCGATCAT 488
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 420 TGGATCATGCACGAATATAGACTCGACGAGAGTGTATTAATCTCCTCGAGTGGCAATGAT 479
Query 489 GACGTCAACGTAGAAACGTGTGATGTCATAGGAAGTGACGAAGGATGGGTGGTGTGTCGT 548
| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 GGCGTCACCGTAGAAACGTGTGATGTCATAGGAGGTGACGAAGGATGGGTGGTGTGTCGT 539
Query 549 GTTTTCAAGAAAAATAACCTTTGCAAAAACATGATTAGTAGTAGCCCGGCGAGTTCGGTG 608
||||||||||| || | ||||||||||||||||||||| || ||||| | |
Sbjct 540 GTTTTCAAGAAGAAGAGCCTTTGCAAAAACATGATTAGCAG---CCCGG----T--G--- 587
Query 609 AAAACGCCGTCGTTCAATG-AGGAGACTATCGAGC-AACTTCTCGAAGTTATGGGGCAAT 666
|||||| |||||||||| | || |||||||||||| || |||| |||| |||||||||||
Sbjct 588 AAAACGTCGTCGTTCAACGTAG-AGACTATCGAGCGAA-TTCTTGAAGATATGGGGCAAT 645
Query 667 CTTGTAAAGGAGAGATAGTTTTAGACCCTTTCTTAAAACTCCCTAACCTCGAATGCCATA 726
||||||||| || |||| ||| ||||||||||||||||||||||||| || | |
Sbjct 646 CTTGTAAAGAAGTGATAATTTCAGACCCTTTCTTAAAACTCCCTAAC----AA--C-A-- 696
Query 727 ACAACACCACCATCACGAGTTATCAGTGGTTAATCG-ACGACCAAGTCAACAACTGCCAC 785
| ||| | ||||||| ||||||| |||||| || |||||| ||||||||||||||||
Sbjct 697 -C--CAC-A--ATCACGAATTATCAGCGGTTAA-CGGACGACCGAGTCAACAACTGCCAC 749
Query 786 GTCAGCAAAGTTATGGATCCCAGCTTCATCACTAGCTGGGCCGCTTTGGATCGGCTCGTT 845
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 750 GTCAGCAAAGTTATGGATCCCAGCTTCGTCACAAGCTGGGCCGCTTTGGATCGGCTCGTT 809
Query 846 GCCTCACAGTTAAATGGGCCCAACTCGTATTCAATACCAGCCGTTAATGAGACTTCACAA 905
||||| || ||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 810 GCCTCGCAACTAAATGGGCCCAACTCGTATTCAATCCCAGCCGTCAATGAGACCTCACAA 869
Query 906 TCACCGTATC-ATGGACTGAACCGGTCCGGTTGTAATACCGGTTTAACACCAGATTACTA 964
||||||| || ||||||| ||||||||||||| ||||||||||||||| || ||||| ||
Sbjct 870 TCACCGT-TCCATGGACTAAACCGGTCCGGTTATAATACCGGTTTAACGCCTGATTATTA 928
Query 965 TATACCGGAGATTGATTTATGGAACGAGGCAGATTTCGCGAGAACGACA 1013
|||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 929 TATACCGGAGATGGATTTATGGAACGATACAGATTTCGGGAGAACGACA 977
Score = 63.9 bits (34), Expect = 3e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1025 GAACGGTAGTGGATAACGGAAATGGAAGAGAGGAAGT 1061
|||||||| ||||||||||||||||||||||||||||
Sbjct 1010 GAACGGTATTGGATAACGGAAATGGAAGAGAGGAAGT 1046
> Ahg935661 jgi|Araly1|935661|scaffold_403649.1
Length=1108
Score = 420 bits (227), Expect = 1e-116
Identities = 360/424 (85%), Gaps = 10/424 (2%)
Strand=Plus/Plus
Query 36 ATGAACATATCAGTAAACGGACAGTCACAAGTACCTCCTGGCTTTAGGTTTCACCCAACC 95
|||| ||||||||| |||||||| || ||||| |||||||| ||||||||||| ||||||
Sbjct 33 ATGAGCATATCAGTGAACGGACAATCTCAAGTGCCTCCTGGGTTTAGGTTTCATCCAACC 92
Query 96 GAGGAAGAGCTCTTGAAGTATTACCTCCGCAAGAAAATCT-CTAACATCAAGATCGATCT 154
||||||||||| ||| ||||||| ||||| |||||| | | || |||| |||| |||||
Sbjct 93 GAGGAAGAGCTGTTGCAGTATTATCTCCGAAAGAAAGT-TAATAGCATCGAGATTGATCT 151
Query 155 CGATGTTATTCC-TGACATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 213
||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TGATGTCA-TCCGCGACGTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 210
Query 214 GTAAGATTGGAACGACGCCGCAAAACGATTGGTACTT-TTATAGCCATAAGGACAAGAAG 272
|||| || ||||| ||||| |||||||| ||||| || || |||||| |||||||| ||
Sbjct 211 GTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTT-TAGCCACAAGGACAAAAAA 269
Query 273 TATCCCACCGGGA-CTAGAACCAACAGAGCCACCACGGTCGGATTTTGGAAAGCGACGGG 331
||||| || |||| | ||||| ||||||||||| ||| ||||||||||||||| || ||
Sbjct 270 TATCCGAC-GGGAACGAGAACTAACAGAGCCACTGCGGCCGGATTTTGGAAAGCAACTGG 328
Query 332 ACGTGACAAGACCATATATACCAATGGT-GATAGAATCGGGATGCGAAAGACGCTTGTCT 390
|| ||||||| |||||||| |||||| | ||| || |||||| ||||||| ||||| |
Sbjct 329 CCGCGACAAGATCATATATAGCAATGGCCG-TAGGATTGGGATGAGAAAGACTCTTGTTT 387
Query 391 TCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGAC 450
|||||||||| ||||| ||||| || || ||||| |||||||||||||| ||||||||||
Sbjct 388 TCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGAC 447
Query 451 TCGA 454
||||
Sbjct 448 TCGA 451
> Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619
Length=1092
Score = 254 bits (137), Expect = 1e-66
Identities = 331/420 (79%), Gaps = 32/420 (8%)
Strand=Plus/Plus
Query 54 GGACAGTCACAAGTACCTCCTGGCTTT-AGGTTTCA-CCCAACCGAGGAAGAGC-TCTTG 110
||||| ||| |||| ||||| || ||| || || || ||| ||||| ||||| | || |
Sbjct 34 GGACAATCAAAAGTGCCTCCAGG-TTTCAGATTCCATCCC-ACCGAAGAAGAACTTC-TC 90
Query 111 AAGTATTACCTCCGCAAGAAAATCTCTAAC-ATC--AAGATCGATCTCGATGTTATTCCT 167
| || || ||||| ||| ||| | |||| || ||||||||||| ||||| |||| |
Sbjct 91 CATTACTATCTCCGTAAG-AAA-GT-TAACTCTCAGAAGATCGATCTTGATGTCATTCGT 147
Query 168 GACATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAG-ATGTGTAAGATT-GGAA 225
|| ||||||||||||||||||||||||||||||||||||||| | |||| || | ||
Sbjct 148 GAAATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGGAA-TGTA-GAATCGGTT 205
Query 226 CGACGCCGCAAAACGATTGGTACTT-TTATAGCCATAAGGACAAGAAGTATCCCACCGGG 284
||||||| |||||||| |||||||| || ||||| ||||||||||||||||| ||||||
Sbjct 206 CGACGCCACAAAACGACTGGTACTTCTTC-AGCCACAAGGACAAGAAGTATCCAACCGGG 264
Query 285 ACTAGAACCAACAGAGCCACCA--CGGTCGGATTTTGGAAAGCGACGGGACGTGACAAGA 342
|| || || ||| | || || | || | |||||||||||||| || |||||||||||||
Sbjct 265 ACCAGGACAAACCGGGCAAC-AGTCGCT-GGATTTTGGAAAGCTACCGGACGTGACAAGA 322
Query 343 CCATAT--A-TACCAATG-GTGATAGAATCGGGAT-GCGAAAGACGCTTGTCTTCTACAA 397
||| | | | || | | || || | || || | | ||||| || || ||||||||
Sbjct 323 TCATCTGCAGTTGCA-TCCG-GAG-GATT-GG-ATTGAGGAAGACACTCGTATTCTACAA 377
Query 398 AGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGACTCGACGA 457
||| |||| ||||| |||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 378 AGGAAGAGCTCCTCACGGTCAGAAATCCGATTGGATCATGCATGAATATCGCCTCGACGA 437
> Ahg475082 jgi|Araly1|475082|fgenesh2_kg.2__212__AT1G62700.1
Length=1209
Score = 195 bits (105), Expect = 9e-49
Identities = 306/400 (77%), Gaps = 26/400 (7%)
Strand=Plus/Plus
Query 60 TCACAAGTACCTCCTGGCTTTAGGTTTCACCCAACCGAGGAAGAGC-TCTTGAAGTATTA 118
|||||||||||||| ||||| || ||||| || || || ||||| | | ||| | || ||
Sbjct 13 TCACAAGTACCTCCGGGCTTCAGATTTCATCCTACTGATGAAGAACTTGTTG-ACTACTA 71
Query 119 CCTCCGCAAGAAAATCTCTAACATC--A-AG-ATCGATCTCGATGTT-ATTC-CTGACAT 172
|| | | ||||| || |||| | || || || ||||| || | || |||| |
Sbjct 72 -CT-TG-AGGAAAA-AAGTAGCATCGAAGAGAATAGAAATCGAT-TTCA-TCAATGACGT 125
Query 173 TGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGTGTAAGATTGG-AACGACGC 231
|||||| ||||| | ||||| |||||| |||||||| | || ||||| || ||||| |
Sbjct 126 TGATCTTTACAAGATTGAGCCATGGGATCTTCAAGAGTTATGCAAGATAGGAAACGAAG- 184
Query 232 CGCAAAACGATTGGTACTT-TTATAGCCATAAGGACAAGAAGTATCCCACCGGGACTAGA 290
||||| ||| |||||||| || ||||||||| |||||||||||||| || || ||| ||
Sbjct 185 AGCAAAGCGAATGGTACTTCTT-TAGCCATAAAGACAAGAAGTATCCTACAGGAACTCGA 243
Query 291 ACCAACAGAGCCACCACGGTC-GGATTTTGGAAAGCGACGGGACGTGACAAGACCATATA 349
||||| ||||| || | | | ||||| |||||||| || ||| | |||||| | |||||
Sbjct 244 ACCAATAGAGCGACGAAAG-CAGGATTCTGGAAAGCCACCGGAAGAGACAAGGCTATATA 302
Query 350 TACCAATGGTGATAG---AATCGGGATGCGAAAGACGCTTGTCTTCTACAAAGGTCGAGC 406
|| || | |||| ||||| ||| | ||||| ||||| || |||||||| ||||
Sbjct 303 TA-TAA--GACATAGTCTTATCGGTATGAGGAAGACACTTGTGTTTTACAAAGGAAGAGC 359
Query 407 CCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATAT 446
||| |||| ||||||||||||||||||||||||||||||
Sbjct 360 CCCAAATGGACAGAAATCCGATTGGATCATGCACGAATAT 399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5