BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61920.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939265 jgi|Araly1|939265|scaffold_503456.1 854 0.0
> Ahg939265 jgi|Araly1|939265|scaffold_503456.1
Length=607
Score = 854 bits (462), Expect = 0.0
Identities = 547/587 (93%), Gaps = 9/587 (2%)
Strand=Plus/Plus
Query 158 AAAAATGGGTAACTGCGTATTCAAAGGCAATGGTGGTTCAAGAAAATTATACGATAAAGA 217
|||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||
Sbjct 17 AAAAATGGGTAACTGCGTATTCAAAGGCAATGGTGGTTTAAGTAAATTACACGATAAAGA 76
Query 218 TGATTCGTTGATAAAAGTGGTGACTCCAAACGGTGGCGTGATGGAGCTTCATCCTCCCAT 277
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 77 TGATTCATTGATAAAAGTTGTGACCCCAAACGGTGGCGTGATGGAGCTTCATCCTCCCAT 136
Query 278 CTTCGCCGAATTCATCACCAACGAATTTCCCGGCCATGTCATCCACGACTCTTTAAGCCT 337
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 137 CTTCGCCGAATTCATCACCAACGAATTTCCCGGCCACGTCATCCACGACTCTTTAAGCCT 196
Query 338 CCGCCACTCATCTCCACCGCTTCTCCACGGCGAAGAACTCTTTCCCGGTAACATCTACTA 397
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 197 CCGTCACTCATCTCCACCGCTTCTCCACGGCGAAGAACTCTTTCCTGGTAACATCTACTA 256
Query 398 CCTCCTTCCTCTTTCTTCTTCCGCAGCCGCGACCGCTCAACTGGATTCCTCCGACCAACT 457
|||||| |||||||||| | || ||| | || ||||||| ||||||||||||| |
Sbjct 257 CCTCCTCCCTCTTTCTTG--C-GCCGCCTCAACTGCTCAACAACATTCCTCCGACCAGTT 313
Query 458 ATCAACGCCGTACAGAATGTCTTTCGGGAAGACGCCGATAATGGCGGCTTTGAGTGG--- 514
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 314 ATCAACGCCGTACAGAATGTCTTTCGGGAAAACGCCGGTAATGGCGGCTTTGAGTGGTGG 373
Query 515 CG--GT-GGTTGTGGAGTGTGGAAGGTGAGGCTTGTGATAAGTCCGGAGCAGTTGGCGGA 571
|| | || ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 374 CGCCGGAGGGGGTGGAGTATGGAAGGTGAGGCTTGTGATAAGTCCGGAGCAGCTGGCGGA 433
Query 572 AATTCTTGCGGAGGATGTGGAAACGGAAGCGTTGGTGGAAAGTGTGAGGACGGTGGCGAA 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AATTCTTGCGGAGGATGTGGAAACGGAAGCGTTGGTGGAAAGTGTGAGGACGGTGGCGAA 493
Query 632 GTGTGGCGGTTACGGCTGCGGCGGAGGAGTTCATTCGAGAGCGAATTCAGACCAGCTAAG 691
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 494 GTGCGGCGGTCACGGCTGCGGCGGAGGAGTTCATTCGAGGGCGAATTCAGACCAGCTAAG 553
Query 692 CGTTACGAGTAGCTTTAAAGGGAAATTGTGGTAAAATTTCGAATTAT 738
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 554 CGTTACGAGTAGCTTTAAAGGGAAATTGAGGTAAAATTTCGAATTAT 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5