BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61930.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486698 jgi|Araly1|486698|fgenesh2_kg.5__2690__AT3G61930.1 837 0.0
> Ahg486698 jgi|Araly1|486698|fgenesh2_kg.5__2690__AT3G61930.1
Length=660
Score = 837 bits (453), Expect = 0.0
Identities = 616/687 (90%), Gaps = 42/687 (6%)
Strand=Plus/Plus
Query 1 AACAATCTCTCATAGTCATATATAGAAACAAGTCATACACGTATCAATTAAATGCAAGCA 60
||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1 AACAATCTCTCATAGTCATATATAGAAACAAGTCATACACGTATCAA-T---T------A 50
Query 61 TTTGGAAAAACAAGAAAGATCAAGAAATGGGGAATTTTCTTAGGAGAAGCTGCGCTGTGC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 -----AAAAACAAGAAAGATCAAGAAATGGGGAATTTTCTTAGGAGAAGCTGCGCTGTGC 105
Query 121 ACCCGGCTTCCGGCGACGGAGGAAGAGGAAGACACGTGGACGAGCCGCCGCAACAACGTC 180
|||||||||||||||| ||||||||||||||||||||||| || || | |||||||||||
Sbjct 106 ACCCGGCTTCCGGCGAGGGAGGAAGAGGAAGACACGTGGAGGATCCACAGCAACAACGTC 165
Query 181 CAAGTAGTGTGCGGATTAAAGTGAGGATGAGAAGAGATCAACTCGAAGAGCTTTTGTACT 240
||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||| || |
Sbjct 166 GAAGGAGTGTACGGATTAAAGTGAGGATGAGAAGAGATCAATTGGAAGATCTTTTATATT 225
Query 241 TGGCGCGTCGTGGTGATCAATCGGACGACGGTGGTAAGATTGGTTTCTTGATTCTTAAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TGGCGCGTCGTGGTGATCAATCGGACGACGGTGGTAAGATTGGTTTCTTGATTCTTAAAG 285
Query 301 AATGTATGGAAGGTCGCTTACCAGCGAGTGTTCTTGGCTCCGGTGGCGATGTTCGATCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 AATGTATGGAAGGTCGCTTACCAGCGAGTGTTCTTGGCTCCGGTGGCGATGTTCGATCTC 345
Query 361 AACGGCGTGGAAGTTACATGGTGTATCGGAGATTGGGTTCCATCACCGAGGAATAATTCA 420
||||| ||||||||||| |||||| ||| ||||||||||||||||| ||||||||||| |
Sbjct 346 AACGGTGTGGAAGTTACTTGGTGTCTCGAAGATTGGGTTCCATCACAGAGGAATAATT-A 404
Query 421 TTAatatatatatatGTGTCTTTCAATACATATAGTTTTAAAGTTTAGATAGACGACACT 480
| | || ||| ||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 405 --A-T-TA-ATACATGTG-CATTCAATACATATAGTTTAAAAGTTTAGATAGACGACACT 458
Query 481 TTAATAACGTTTTCTAGATCAACAATTATATGTAAGGCTaaagaaacaaaaaaa-a---- 535
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 459 TTAATAACGTTTTCTAGATCAACAATTATATGTAAGGCTAAAGAAAGAAAAAAAGAAAAA 518
Query 536 ---ggagtttcgttatcaaaaaattgaaaagaa-aa-atatataa--aa-GTAGTATGTT 587
|||||||| | |||||||| |||||||| || | ||| || || ||||||| ||
Sbjct 519 AAAGGAGTTTC---A-CAAAAAATAGAAAAGAAGAAGAAATAAAATTAAAGTAGTATATT 574
Query 588 TGTGTCACGCATTTAATTAAAGATATAAG--TGTAAATCTCAATACTTTTTATTCGTCAA 645
||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 575 TGTGTCATGCATTTAATTAAAGATATAAAAATGTAAATCTCAATACTTTTTATTT-TCAA 633
Query 646 CAAATATAAGAGTTTTGATGGCGTTTT 672
|||||||||||||||||||||||||||
Sbjct 634 CAAATATAAGAGTTTTGATGGCGTTTT 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5