BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61950.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486700 jgi|Araly1|486700|fgenesh2_kg.5__2692__AT3G61950.1 1823 0.0
Ahg935665 jgi|Araly1|935665|scaffold_403653.1 370 1e-101
> Ahg486700 jgi|Araly1|486700|fgenesh2_kg.5__2692__AT3G61950.1
Length=1289
Score = 1823 bits (987), Expect = 0.0
Identities = 1206/1307 (92%), Gaps = 33/1307 (3%)
Strand=Plus/Plus
Query 1 AGAATCAGAAGAGAGTACATGAGTTTCCTCTTCTGCCTCTTTGGTGATTCTTAGCATTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAATCAGAAGAGAGTACATGAGTTTCCTCTTCTGCCTCTTTGGTGATTCTTAGCATTTA 60
Query 61 TTATTACTCACTCATCTTCTTTTCATTACATTACATACCAAACAAGAGCTCTCAAATGGA 120
|||||||||||||||| | | |||||||||||||||| |||||||||||||||||||| |
Sbjct 61 TTATTACTCACTCATCCTGTGTTCATTACATTACATAACAAACAAGAGCTCTCAAATGAA 120
Query 121 AAGGTTTCAAGGACACATCAACCCCTGTTTCTTCGATCGAAAACCGGATGTGAGAAGCCT 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 AAGGTTTCAAGGACACATCAACCCCTGTTTTTTCGATCGAAAACCGGATGTGAGAAGCCT 180
Query 181 CGAGGTTCAAGGATTTGCAGAGGCTCAAAGCTTTGCTTTCAAAGAAAAAGAGGAAGAAAG 240
|| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 181 AGAAGTTCAAGGATTTGCAGAGGCTCAAAGCTTTGCCTTCAAAGAAGAAGAGGAAGAAAG 240
Query 241 CTTACAAGATACAGTTCCATTTCTACAGATGCTGCAAAGTGAAGACCCCTCATCGttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTTACAAGATACAGTTCCATTTCTACAGATGCTGCAAAGTGAAGACCCCTCATCGTTCTT 300
Query 301 ttCAATCAAAGAGCCAAACTTTCTGACGCTACTGTCTCTTCAAACCCTCAAGGAGCCTTG 360
|||||||||||| ||||||||||| || ||| | ||||||||||||||||| ||||||||
Sbjct 301 TTCAATCAAAGAACCAAACTTTCTAACACTATTATCTCTTCAAACCCTCAAAGAGCCTTG 360
Query 361 GGAACTCGAAAG--AT-----ATCT--TTCACTTGAGG-ATTCACAATTTCATTCACCGG 410
|||||||||||| | |||| ||||| |||| | || | | | | ||||
Sbjct 361 GGAACTCGAAAGCTTTCCGGAATCTCATTCAC-CGAGGCAATC-CGA---GACTAACCGC 415
Query 411 TCCAATCTGAGACCAACCGCTTCATGGAAGGAGCCAATCAAGCTGTGTCAAGCCAAGAA- 469
| | ||| ||| |||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 416 TTCTATC--AGA--AACC-ATCCATGGAAGGAGCCAATCAAGCTTTGTCAAGCCAAGAAC 470
Query 470 ATTCCCTTTAGCCAAGCAAACATGACACTCCCTTCTTCTACCTCATCACCACTCAGTGCA 529
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 471 CTT-TCTTAAGCCAAGCAATCATGACACTCCCTTCTTCTACCTCATCACCACTCACTGCA 529
Query 530 CATTCAAGACGAAAGCGCAAAATCAACCACTTGCTGCCTcaagaaatgactagagaaaag 589
|||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 530 AATTCAAGACGTAAGCGCAAAATCAACCACTTGCTGCCACAAGAAATGACTCGAGAAAAG 589
Query 590 agaaagaggaggaaaacaaaaccaagtaaaaacaatgaagagattgagaatcaaagaaTA 649
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 590 AGAAAAAGGAGGAAAACAAAACCAAGTAAAAACATTGAAGAGATTGAGAATCAAAGAATA 649
Query 650 AACCACATTGCTGTTGAACGAAA-CAGAAGACGTCAAATGAACGAACATATCAACTCTCT 708
|||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 650 AACCACATTGCTGTCGAACGAAATC-GAAGACGTCAAATGAATGAACATATCAACTCTCT 708
Query 709 CCGGGCCCTTCTCCCACCTTCCTACATCCAACGAGGAGACCAAGCTTCCATAGTAGGAGG 768
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 709 CCGTGCCCTTCTCCCACCTTCCTACATCCAACGAGGAGACCAAGCGTCCATAGTAGGAGG 768
Query 769 AGCAATAAACTACGTGAAGGTCCTCGAGCAAATCATACAATCTCTCGAATCGCAAAAGAG 828
||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 769 AGCGATAAACTACGTGAAGGTTCTAGAGCAAATCATACAATCTCTTGAATCGCAAAAGAG 828
Query 829 AACGCAACAACAAAGTAACAGTGAGGTAGTAGAAAACGCACTTAATCATCTCTCAGGCAT 888
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 829 AACGCAACAAGAAAG---CAGTGAGGTAGTAGAAAACGCAATTAATCATCTCTCAGGCAT 885
Query 889 TTCGTCGAACGACCT-GTGGACAACTCTTGAAGATCAAACTTGTATCCCCAAAATCGAAG 947
|||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 886 TTCGTCGAACGA-CTCGTGGACAACTCAAGAAGATCAAACTTGTATCCCCAAAATCGAAG 944
Query 948 CTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATGTGAGAAGAAACAAGGACAAC 1007
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 945 CTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATGTCAGAAGAAACAAGGACAAC 1004
Query 1008 TTCTCAAAGGAATCATATCACTTGAAAAGCTTAAACTCACTGTTCTTCATCTCAATATCA 1067
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1005 TTCTCAAAGGAATCATTTCACTCGAAAAGCTTAAACTCACTGTTCTTCATCTGAATATCA 1064
Query 1068 CTACTTCGTCTCATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGGAAGATGAGTGCG 1127
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1065 CCACTTCGTCTCATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGGAGGATGAGTGCG 1124
Query 1128 ACTTAGAGTCAGCCGACGAGATTACGGCGGCTGTTCATCGGATTTTCGATATTCCGACAA 1187
| ||||| ||||||||||||||||||||||| || |||| |||||||||||||||||| |
Sbjct 1125 AATTAGAATCAGCCGACGAGATTACGGCGGCGGTGCATCAGATTTTCGATATTCCGACGA 1184
Query 1188 TTTGATTAAA-CACATATAATTCCAAAAA-TATTAACAGCTGACAAAATGGTATCttttt 1245
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1185 TTTGATTAAAACACATATAATTCCAAAAAATATTAACAGCTGACAAAATGGTATCTTTTT 1244
Query 1246 tttttttCCTACTTGTACCAATTTTTTAAGAATTAAGAGAATaaaaa 1292
||||| ||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1245 TTTTT--CCTACGTGTACTATTTTTTTAAGAATTAAGAGAATAAAAA 1289
> Ahg935665 jgi|Araly1|935665|scaffold_403653.1
Length=1105
Score = 370 bits (200), Expect = 1e-101
Identities = 719/957 (75%), Gaps = 86/957 (9%)
Strand=Plus/Plus
Query 251 ACAGTTCCATTTCTACAGATGCTG---CAAAGTGAAGACCCCTCAT-CGtttttttCAAT 306
||| ||||||||||||| |||||| |||||||||||||| || | ||||||| ||| |
Sbjct 177 ACAATTCCATTTCTACAAATGCTGCAACAAAGTGAAGACCCTTC-TCCGTTTTTGTCATT 235
Query 307 CAAAGAGCCAAACTTTCTGA-CGCTACTGTCTCTTCAAAC-CCTCAAGGAGCCTTGGGAA 364
|||||| |||| |||||| | | ||||| ||||| || || | | || |||||||||||
Sbjct 236 CAAAGACCCAAGCTTTCT-AGCACTACTATCTCTCCAGACACTTGAA-AAGCCTTGGGAA 293
Query 365 CTCGAAAGA-TATCTTTCACTTGAGGATT-CACAATTTCATTCACCGGTCCAATCTGAGA 422
||||||| | ||||| ||| ||| | || || | |||||||||||| |||| ||||| |
Sbjct 294 CTCGAAA-ACTATCTCCCACATGAAG-TTCCAGAGTTTCATTCACCGATCCATTCTGAAA 351
Query 423 CCAACCGCTTCATGGAAGGAGCCAATCAAGCTGTGTCAA---GCCAA-GAAATTCCCTTT 478
| |||| || | | | | || | | || || || ||||| | || || | |
Sbjct 352 CTAACCACTAC-T---ATCA--TAACCCACCTTTG-GAAGGGGCCAATG-AA-GCCATCT 402
Query 479 AGCCAAGCAAACATGACACTCCCTTCTTCTACCTCATCACCACTCAGTGCACATTCAAGA 538
||||| || | || ||| || ||| | | | ||| | | |||| || |||||
Sbjct 403 ---CAAGC-AA-A-GA-ACTTCC--ATTC-AAC-C--CACTAGAGAATGCAAATCCAAGA 449
Query 539 CGAAAGCGCAAAATCAACCACTTGCTGCCTcaagaaatgactagagaaaagagaaagagg 598
|| ||||| |||| |||| ||||| || | | ||||| |||||||||||||||||
Sbjct 450 CGCAAGCGGAAAAACAACAACTTG--GCAAC-ATTGATGACCAGAGAAAAGAGAAAGAGA 506
Query 599 aggaaaacaaaaccaagtaaa-aacaat-gaagagattgagaatcaaagaaTAAAC-CAC 655
|||| ||| ||||||| ||| ||| || ||||||||||||| ||||||||| || |||
Sbjct 507 AGGAGAACTAAACCAA-CAAAGAAC-ATAGAAGAGATTGAGAGTCAAAGAAT-GACACAC 563
Query 656 ATTGCTGTTGAACGAAACAGAAGACGTCAAATGAACGAACATATCAACTCTCTCCGGGC- 714
||||| |||||||||||| | ||||| |||||||||| ||| | ||||| |||| ||
Sbjct 564 ATTGCGGTTGAACGAAACCGCAGACGCCAAATGAACGTTCATCTGAACTCACTCC--GCT 621
Query 715 CCTTC-TCCCACCTTCCTACATCCAACGAGGAGACCAAGCTTCCATAGTAGGAGGAGCAA 773
|| || | |||||||| ||||||||| | ||||||||||| || ||||||||||||||||
Sbjct 622 CCATCATTCCACCTTCATACATCCAAAGGGGAGACCAAGCGTCGATAGTAGGAGGAGCAA 681
Query 774 TAAACTACGTGAAGGTCCTCGAGCAA-ATCATACAATCTCTCGAATCGCAAAAGAGAACG 832
|| ||| ||| ||| |||| |||||| | | | ||||| || ||| | |||||||||| |
Sbjct 682 TAGACTTCGTAAAGATCCTAGAGCAACA-CTTGCAATCCCTTGAAGCACAAAAGAGAA-G 739
Query 833 CAACAACAAAGTAACAGTGAGGTAGTAGAAA-ACGC-ACTTAATCATCTCTCA-GG-CAT 888
||||| ||| | ||| || | ||| | || | || | | |||| || |||
Sbjct 740 --TCAACAGAGT--GA-TGA--TA--ACAAAGA-GCAAATT-CT-AGAACTCAGGGACAT 787
Query 889 TTCGTCGAACGACCT--GTG-GACAACTCTTGAAGATCAAACTTGTATCCCCAAAATCGA 945
|||||||||| | | ||| || | | ||||| |||| | | | | |||||||||
Sbjct 788 TTCGTCGAACAAGTTGCGTGCGAGTAGTAAAGAAGAACAAAGTAGCAAACTCAAAATCGA 847
Query 946 AGCTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATGTGA-GAAGAAACAAGGAC 1004
||| ||||||||| | | || |||| || ||| ||||||| | || |||| ||||||
Sbjct 848 AGCCACAGTGATAGAGAGTCACGTCAATCTGAAAATTCAATG-CAGGAGGAAAGAAGGAC 906
Query 1005 AACTTCTCAAAGGAATCATATCACTTGA-AAAGCTTAAACTCACTGTTCTTCATCTCAAT 1063
||||||||| | |||||||| || || ||| ||| | |||||||||||||||||||
Sbjct 907 AACTTCTCAGATCAATCATATTGCTGGAGAAA-CTTCGATTCACTGTTCTTCATCTCAAC 965
Query 1064 ATCACTA-CTTCGTCTC-ATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGGAAGATG 1121
||||| | || || | | || | ||||| |||||||||||||||||||||||||||||||
Sbjct 966 ATCAC-ATCTCCGAC-CAATACATCTGTCTCTTATTCCTTCAACCTCAAGATGGAAGATG 1023
Query 1122 AGTGCGACTTAG-AGTCAGCCGACGAGATTACGGCGGCTG-TTCATCGGATTTTCGA 1176
| ||| | || | | ||||| || ||||| |||||||| | ||| || |||||||||
Sbjct 1024 ACTGCAATTTGGGA-TCAGCTGATGAGATAACGGCGGC-GATTCGTCAGATTTTCGA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5