BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61960.1
Length=2366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939269 jgi|Araly1|939269|scaffold_503460.1 3192 0.0
> Ahg939269 jgi|Araly1|939269|scaffold_503460.1
Length=1922
Score = 3192 bits (1728), Expect = 0.0
Identities = 1860/1924 (97%), Gaps = 8/1924 (0%)
Strand=Plus/Plus
Query 275 AAAA-CCAAAAAATTCCGGATGGAGTCGGCACGACTTGTGGGTGACTACGCACTTGGCCC 333
|||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 AAAACCCAAAAAA-TCTGGATGGAGTCGGCACGACTTGTGGGTGACTACGAACTTGGCCC 61
Query 334 GAGAATTGGGTCTGGTTCGTTTGCGGTGGTGTGGTTAGCGAAGCATCGATCTTCTGGTTT 393
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 62 GAGGATTGGGTCTGGTTCGTTTGCGGTGGTGTGGTTAGCGAAGCATCGATCGTCTGGTTT 121
Query 394 AGAAGTTGCCGTCAAAGAGATTGATAAGAAACTTCTTAGCCCTAAAGTAAGAGATAATCT 453
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 122 AGAAGTCGCCGTCAAAGAGATTGATAAGAAACTTCTTAGCCCTAAAGTCAGAGATAATCT 181
Query 454 TCTTAAAGAGATTTCGATCCTTAGCACAATCGATCATCCTAATATCATCCGATTCTACGA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCTTAAAGAGATTTCGATCCTTAGCACAATCGATCATCCTAATATCATCCGATTCTACGA 241
Query 514 AGCAATCGAGACTGGAGATAGGATATTTCTTGTGTTGGAGTATTGTAGTGGAGGTGATCT 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGCAATCGAGACTGGAGATAGGATATTTCTTGTGTTGGAGTATTGTAGTGGAGGTGATCT 301
Query 574 TGCTGGCTATATCAATCGCCATGGCAAAGTACCTGAAGCTGTTGCTAAACATTTTATGAG 633
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 302 TGCTGGGTATATCAATCGCCATGGGAAAGTACCTGAAGCTGTTGCTAAACATTTTATGAG 361
Query 634 GCAATTGGCTTTAGGGTTACAAGTACTTCAAGAGAAGCATTTTATTCACCGAGATTTAAA 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GCAATTGGCTTTAGGGTTACAAGTACTTCAAGAGAAGCATTTTATTCACCGAGATTTAAA 421
Query 694 GCCTCAGAATTTACTTTTATCTTCCAAGGAAGTAACTCCATTGCTAAAGATAGGAGATTT 753
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 422 GCCTCAGAATTTACTTTTATCGTCCAAGGAAGTTACTCCATTGCTAAAGATAGGGGATTT 481
Query 754 TGGGTTTGCAAGGTCTCTAACACCGGAGAGCATGGCGGAAACATTTTGCGGTTCTCCATT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGGGTTTGCAAGGTCTCTAACACCGGAGAGCATGGCGGAAACATTTTGCGGTTCTCCATT 541
Query 814 GTATATGGCTCCAGAAATTATCCGGAATCAAAAGTATGATGCTAAGGCTGACTTATGGAG 873
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 542 GTATATGGCTCCAGAAATTATCCGGAACCAAAAGTATGATGCTAAGGCTGACTTATGGAG 601
Query 874 TGCCGGTGCGATTTTGTTTCAACTTGTTACTGGGAAACCACCTTTTGATGGAAATAATCA 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGCCGGTGCGATTTTGTTTCAACTTGTTACTGGGAAACCACCTTTTGATGGAAATAATCA 661
Query 934 CATACAGCTTTTTCATAATATTGTGAGAGACACTGAGCTGAAATTTCCTGAAGATACTAG 993
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 662 CATACAGCTTTTTCATAATATTGTAAGAGACACTGAGCTGAAATTTCCTGAAGATGCTAG 721
Query 994 GAATGAGATTCATCCAGATTGTGTTGATCTGTGCAGAAGTCTTCTCCGCCGAAACCCAAT 1053
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 722 GAATGAGATTCATCCAGATTGTGTTGATCTATGCAGAAGTCTTCTCCGCCGAAACCCAAT 781
Query 1054 TGAACGCTTGACATTCCGAGAGTTCTTCAATCACATGTTCCTTCGAGAGCCAAGACAAAT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGAACGCTTGACATTCCGAGAGTTCTTCAATCACATGTTCCTTCGAGAGCCAAGACAAAT 841
Query 1114 TCCGGATGTTGAGCATTCTGGTTTTAGTACCTGTACGGGGAAATCACT-GTTGCCCTCCG 1172
|||||||||| ||||||||||| || ||||| ||||||||||||| | |||||||||||
Sbjct 842 GCCGGATGTTGTGCATTCTGGTTCTACTACCTCTACGGGGAAATCA-TCGTTGCCCTCCG 900
Query 1173 CACAACCGAGTACTAGTACAAACCGTTTTAAATCAAGTGCAGAGAATGTTCACAAACATG 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CACAACCGAGTACTAGTACAAACCGTTTTAAATCAAGTGCAGAGAATGTTCACAAACATG 960
Query 1233 GGAGTTCCTCTAGTGCCTCAAATTCTCAAATTTCAATGCCACATACCTCTTTTGAGAAGA 1292
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 961 GGAGTTCCTCTAGTGCCTCAAATTCTCAAATTTCAATGCCACATATCTCTTTTGAGAAGA 1020
Query 1293 CTAGAAAAGATACTGAGGGACAATGCTCATCAAACCAATCTGGAGTTGTTGATTCACTCG 1352
|||||||||| |||||||||||||||||| |||| |||| |||||||||||| ||||| |
Sbjct 1021 CTAGAAAAGACACTGAGGGACAATGCTCACCAAATCAATTTGGAGTTGTTGACTCACTTG 1080
Query 1353 AGCTCATAGAGAGAGAGTATGTTCTTGTAAACCGTCCTTCTGCCTCGCTGGAAGGTTCAT 1412
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1081 AGCTCATAGAGCGAGAGTATGTTCTTGTAAACCGTCCTTCTGCCTCGCTGGAAGGGTCAT 1140
Query 1413 CAGATTGTTTCGACACATCATTGCAAGATTCCGGTTTTCCTAATATCTTACCAAGGAATG 1472
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 CAGATTGTTTCGACACATCATTGCAAGATTCCGGTTTTCCTAATATCTTACCCAGGAATG 1200
Query 1473 AAAAAGTTTCATCGAGTTCACTTGAAGCACAGAAACCATTATCTGATGTGTCAGGTCCAC 1532
||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 1201 AAAAAGTTTCATCAAGTTCACTTGAAGCACAGAGACCATCATCTGATGTGTCAGGTTCAC 1260
Query 1533 GACCAGCAAGCGTTTCATATCTGCTAACAGAAGTACAACGCTTAACGATTGTCCATCCTC 1592
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GACCAACAAGCGTATCATATCTGCTAACAGAAGTACAACGCTTAACGATTGTCCATCCTC 1320
Query 1593 CAACTAAACTCCAACTTTTGCATCAGTATGCACAAGCACTTACAGAACTAGCTAGCGAGA 1652
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 CAACTAAGCTCCAACTTTTGCATCAGTATGCACAAGCACTTACAGAACTAGCTCGCGAGA 1380
Query 1653 TGGGCAATACAGGGCAGGTAAAGGAATCTTTTGCTGTTACGCTCGTCGTTTTAGCTGTCT 1712
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGGGCAACACAGGGCTGGTAAAGGAATCTTTTGCTGTTACGCTCGTCGTTTTAGCTGTCT 1440
Query 1713 GGAGAAAAGCCTTAGAGATATGTGATTCTTGGATGATGTCCGTTGGAGAGAATGAA-GTG 1771
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1441 GGAGAAAAGCCTTAGAGATATGTGATTCTTGGATGATGTCCGTTGGAGAGGAT-AATGTG 1499
Query 1772 AACCCAGATCCAACCACGGCTCCTGAGACTTCGATTCCAGATTTGAATTCACCTGCACCA 1831
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1500 AACCCAGATCCAACCACAGCTCCTGAGACTTCAATTCCAGATTTAAATTCACCTGCACCA 1559
Query 1832 GCTAAAACGTGGGTGACACAAGAGTTTGTTACCGCGTTAAACCAAGCCGAGAATTTATCA 1891
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1560 GCTAAAACTTGGGTGACACAAGAGTTTGTTACTGCGTTTAACCAAGCCGAGAATTCATCA 1619
Query 1892 ACTCAACTAAACGAAACAAGTGCTGCCACTCATATGCCTGACGCCATGGAAACAATATAC 1951
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1620 ACTCAACTAAACGAAACAAGCGCTGCCACTCATATGCCTGACGCCATGGAAACAATATAC 1679
Query 1952 GAGAGGGCACTAGCATATGGCAAGAGTGGTGGGGCTGAAGAATATTTGAGTAACAAAGAA 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GAGAGGGCACTAGCATATGGCAAGAGTGGTGGGGCTGAAGAATATTTGAGTAACAAAGAA 1739
Query 2012 AGTGCAGCAACATTATACAAGAAAGCAATTCTTCTACTCTCCTTTATAATCGAGGAAGCA 2071
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1740 AGTGCAGCAACATTATACAAGAAAGCAATTCTTCTACTCTCCTTTATAACCGAGGAAGCA 1799
Query 2072 GTGACTCTATCTCTAAACCCCTC-TTTCTCATTAACCCCTGACGACAAGAAGCGGATTCT 2130
||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||
Sbjct 1800 GTGACTCTATCTCTAAATCC-TCCTTTCTCACTAACCCCTGACGACAAGAAGCGGATTCT 1858
Query 2131 CTACTACATCTCTAACTTACAGCATCGTCGGTCTCATCTTTAGCGAAAATAGACCGCGGG 2190
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 1859 CTACTACATCTCTAACTTGCAGCATCGTCGGTCTCATCTTTAGCAAAAATCGACCACGGG 1918
Query 2191 CATT 2194
||||
Sbjct 1919 CATT 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89131173300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5