BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61970.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486704 jgi|Araly1|486704|fgenesh2_kg.5__2696__AT3G61970.1 1988 0.0
Ahg497309 jgi|Araly1|497309|fgenesh2_kg.181__3__AT2G46870.1 313 3e-84
Ahg483854 jgi|Araly1|483854|fgenesh2_kg.4__2914__AT2G46870.1 313 3e-84
> Ahg486704 jgi|Araly1|486704|fgenesh2_kg.5__2696__AT3G61970.1
Length=1363
Score = 1988 bits (1076), Expect = 0.0
Identities = 1285/1377 (93%), Gaps = 50/1377 (4%)
Strand=Plus/Plus
Query 34 tctctct-tctcct-tccttgttcttAGAGATTGATCCTAACTTGTTTTTCCTTTCTTGG 91
||||||| |||| | ||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 16 TCTCTCTCTCTCTTCTCCTT-CTCTCAGAGATTGATCCTAACTTGTTTTTCCTTTCTCGG 74
Query 92 AATTGAAGAGCTTCTTGTTCCATAAACAGTAGAGAGAGAAAGCTTCAAAGAGAGAATCGT 151
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AATTGAAGAGTTTCTTGCTCCATAAACAGTAGAGAGAGAAAGCTTCAAAGAGAGAATCGT 134
Query 152 GCTAATCAGTGAAGTTAGGCAAAAACCCACTTGCCATTTTTGTATAATTAGGTCAATCTC 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GCTAATCAGTGAAGTTAGGCAAAAACCCACTTGCCATTTTTGTATAATTAGGTCAATCTC 194
Query 212 ATCCACCACCATACTCAATTCTCTTCCTTCTGAAATTAGGGttttttttATCTCCTCCTC 271
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 195 ATCCACCACCATACTCAATTCTCTTCCTTCTGAAATTAGGGTTTTT---ATCTCTTCCTC 251
Query 272 TCTCTTTCTTGTCTACC-AAAAAAGGTTTTATCGAATTACTCTCAAATCGTATGGTGAGG 330
||||||||||||||||| |||||| | || | |||| ||||||||||||||||||||||
Sbjct 252 TCTCTTTCTTGTCTACCTAAAAAAAGATTGAA-GAATAACTCTCAAATCGTATGGTGAGG 310
Query 331 AAGTCAAAATCTTGAGAGATCTGAGATTGTAAGAAGATGAATCAAGAAGATAAAGAGAAG 390
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 311 AAGTCAAAATCTTGAAAGATCTGAGATTGCAAGAAGATGAATCAAGAAGATAAAGAGAAG 370
Query 391 CCTATTGAAGAAGCTTCTTCATCAATGGAGAGAGAACACATGTTCGACAAAGTAGTAACA 450
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 371 CCTATTGAAGAAGCTTCTTCATCAATGGAAAGAGAACACATGTTCGACAAAGTGGTAACA 430
Query 451 CCAAGCGACGTTGGCAAACTAAACCGACTCGTGATCCCTAAGCAACACGCAGAGAGATAC 510
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 431 CCAAGCGACGTAGGCAAACTAAACCGACTCGTGATACCAAAGCAACACGCAGAGAGATAC 490
Query 511 TTCCCATTAGATAACTCCACAACAAACGACAGCAACAAAGGTTTGCTTCTAAACTTCGAA 570
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 491 TTCCCATTAGATAACTCCACAACAAACGACAACAACAAAGGTTTGCTTCTAAACTTCGAA 550
Query 571 GATCGAAGTGGAAACTCATGGAGGTTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTAT 630
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 551 GACCGAAGCGGAAACTCATGGAGGTTTCGTTACTCTTACTGGAACAGTAGTCAAAGCTAT 610
Query 631 GTCATGACTAAAGGTTGGAGCCGTTTTGTCAAAGACAAGAAGCTTGATGCTGGAGACATC 690
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 611 GTCATGACTAAAGGTTGGAGCCGTTTCGTCAAAGACAAGAAGCTTGATGCTGGAGACATC 670
Query 691 GTTTCTTTTCAGAGAGATTCTTGTAATAAAGACAAGCTTTACATCGATTGGAGGAGACGA 750
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 671 GTTTCTTTTCAGAGAGACTCCGGTAATAAAGACAAGCTTTACATCGATTGGAGGAGACGA 730
Query 751 CCTAAGATTCCCGATCATCATCATCAGCA--AT---T-CGCCGGAGCTATGTTCCCTAGG 804
|||||||||||||||||||||||||| || || | ||||||||||||||| ||||||
Sbjct 731 CCTAAGATTCCCGATCATCATCATCATCATCATCAGTTCGCCGGAGCTATGTTTCCTAGG 790
Query 805 TTTTACACTTTTCCTCATCCTCAGATGCCGACAAATTACGAAACTCACAACCTTTATCAT 864
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 791 TTTTACACTTTCCCTCATCCTCAGATGCCGACAAATTACGAAAGTCACAACCTTTATCAT 850
Query 865 CGATTTCATCAACGAGATCTAGGAATTGGATACTATGTGAGGTCAATGGAGAGGAGTCAT 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 851 CGATTTCATCAACGAGATCTAGGAATTGGATACTATGTGAGGTCAATGGAGAGGAGTAAT 910
Query 925 CCAACGGCTGTGATTGAATCTGTGCCGGTGATGATGCAAAGGAGAGCACAAGTGGCTTCA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 911 CCAACGGCTGTGATTGAATCTGTGCCGGTGATGATGCAAAGGAGAGCACAAGTGGTTTCT 970
Query 985 ATGGCTTCGAGAGGAGAGAAGCGGTTAAGGCTGTTTGGTGTAGATATGGAGTG------- 1037
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 971 ATGGCTTCGAGAGGAGAGAAGAGGTTAAGGCTGTTTGGTGTAGATATGGAGTGTGGAGGT 1030
Query 1038 --CGGAGGAGGAGGAGGGAGTGTGAATAGTACGGAGGAAGAGTCGTCGTCTTCCGGTGGT 1095
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1031 GGCGGAGGAGGAGGAGGGAGTGTTAATAGTACGGAGGAAGAGTCGTCGTCTTCCGGTGGT 1090
Query 1096 AGTATACCACGTGGCAGAGTTTCTATGGTTGGTGCTGGTTCTCTCCTCCAGTTGAGGTTA 1155
||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AGTATGCCACGTGGCGGCGTTTCTATGGTTGGTGCTGGTTCTCTCCTCCAGTTGAGGTTA 1150
Query 1156 GTGAGCAGTGATGATGAGTCTTTAGTAGCAATGGAAGCTGCAAGTCTTGAGGATCATCAC 1215
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GTAAGCAGTGATGATGAGTCTTTAGTAGCAATGGAAGCTGCAAGTCTTGAGGATCATCAC 1210
Query 1216 TTCTTTACAAAGAAAGGAAAACCTTCTTTGTCTTTTGATTTGGATAGGTGATGATTATCA 1275
||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1211 TTCTTTACAAAGAAAGGAAAATCTTCTTTGTCTTTTGATTTGGATAG---ATGAT----- 1262
Query 1276 TGAGATTAATCACTATTTAAAAATGCatatatatgataatttataccatatat-tatata 1334
|| |||| | || |||||||||||||||||||||| |||||| ||||||
Sbjct 1263 -GA--TTAA--A--AT--------GCATATATATGATAATTTATAC-ATATATCTATATA 1306
Query 1335 t--GACACAAAGATGTCTTTCAAGATTTAATGATATTATCAAGAAATAACATGTTTT 1389
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TATGACACAAAGTTGTCTTTCAAGATTTAATGATATTATCAAGAAATAACATGTTTT 1363
> Ahg497309 jgi|Araly1|497309|fgenesh2_kg.181__3__AT2G46870.1
Length=1420
Score = 313 bits (169), Expect = 3e-84
Identities = 343/420 (82%), Gaps = 39/420 (9%)
Strand=Plus/Plus
Query 418 GAGAGAGAACACATGTTCGACAAAGTAGTAACACCAAGCGACGTTGGCAAACTAAACCGA 477
|||||||| ||||||||||||||||| || || ||||| || || || ||||||||||||
Sbjct 435 GAGAGAGAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGA 494
Query 478 CTCGTGATCCCTAAGCAACACGCAGAGAGATACTTCCCATTAGATAACTCCA-CAACAAA 536
|| |||||||| ||||||||||||||||||| |||||| |||||| | || | | ||
Sbjct 495 CTTGTGATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGAT---T-CATCTTCTAA 550
Query 537 CGACAGCAACAAAGGTTTGCTTCTAAACTTCGAAGATC-GA-AGTGGAAACTCATGGAGG 594
|| || |||||||||||| ||||||||||||||| | || | ||| |||||||||
Sbjct 551 CG--AG----AAAGGTTTGCTTTTAAACTTCGAAGATCTCACAG-GCAAA-TCATGGAGG 602
Query 595 TTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 603 TTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGA 662
Query 655 TTTGTCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTTTCAGAGAGAT-TCTTG 713
|| || |||||||| |||||||| || ||||| || || |||||||| | |||| | | |
Sbjct 663 TTCGTTAAAGACAAAAAGCTTGACGCCGGAGATATTGTCTCTTTTCA-A-AGATGTGTCG 720
Query 714 TA-AT--A--AAGACA-AG-C-TTTAC--ATCGATTGGAGGAGACGACCTAAGATTCCC- 762
| || | |||| | || | ||| || |||||||||||||||||||| | ||||
Sbjct 721 GAGATTCAGGAAGAGATAGTCGTTTGTTTATTGATTGGAGGAGACGACCTAA-AGTCCCT 779
Query 763 GATCATCATCAT--CAGCAATTCGCCGGAGCTATGTTCCCTAGGTTTTACA-CTTTTCCT 819
|| |||| |||| | || ||||||||||||||||||||||||||||| |||| |||
Sbjct 780 GACCATCCTCATTTC-GC----CGCCGGAGCTATGTTCCCTAGGTTTTACAGCTTT-CCT 833
> Ahg483854 jgi|Araly1|483854|fgenesh2_kg.4__2914__AT2G46870.1
Length=1414
Score = 313 bits (169), Expect = 3e-84
Identities = 343/420 (82%), Gaps = 39/420 (9%)
Strand=Plus/Plus
Query 418 GAGAGAGAACACATGTTCGACAAAGTAGTAACACCAAGCGACGTTGGCAAACTAAACCGA 477
|||||||| ||||||||||||||||| || || ||||| || || || ||||||||||||
Sbjct 436 GAGAGAGAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGA 495
Query 478 CTCGTGATCCCTAAGCAACACGCAGAGAGATACTTCCCATTAGATAACTCCA-CAACAAA 536
|| |||||||| ||||||||||||||||||| |||||| |||||| | || | | ||
Sbjct 496 CTTGTGATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGAT---T-CATCTTCTAA 551
Query 537 CGACAGCAACAAAGGTTTGCTTCTAAACTTCGAAGATC-GA-AGTGGAAACTCATGGAGG 594
|| || |||||||||||| ||||||||||||||| | || | ||| |||||||||
Sbjct 552 CG--AG----AAAGGTTTGCTTTTAAACTTCGAAGATCTCACAG-GCAAA-TCATGGAGG 603
Query 595 TTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 604 TTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGA 663
Query 655 TTTGTCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTTTCAGAGAGAT-TCTTG 713
|| || |||||||| |||||||| || ||||| || || |||||||| | |||| | | |
Sbjct 664 TTCGTTAAAGACAAAAAGCTTGACGCCGGAGATATTGTCTCTTTTCA-A-AGATGTGTCG 721
Query 714 TA-AT--A--AAGACA-AG-C-TTTAC--ATCGATTGGAGGAGACGACCTAAGATTCCC- 762
| || | |||| | || | ||| || |||||||||||||||||||| | ||||
Sbjct 722 GAGATTCAGGAAGAGATAGTCGTTTGTTTATTGATTGGAGGAGACGACCTAA-AGTCCCT 780
Query 763 GATCATCATCAT--CAGCAATTCGCCGGAGCTATGTTCCCTAGGTTTTACA-CTTTTCCT 819
|| |||| |||| | || ||||||||||||||||||||||||||||| |||| |||
Sbjct 781 GACCATCCTCATTTC-GC----CGCCGGAGCTATGTTCCCTAGGTTTTACAGCTTT-CCT 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5