BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61980.1 Length=745 Score E Sequences producing significant alignments: (Bits) Value Ahg486705 jgi|Araly1|486705|fgenesh2_kg.5__2697__AT3G61980.1 924 0.0 > Ahg486705 jgi|Araly1|486705|fgenesh2_kg.5__2697__AT3G61980.1 Length=680 Score = 924 bits (500), Expect = 0.0 Identities = 626/684 (92%), Gaps = 20/684 (3%) Strand=Plus/Plus Query 1 AAACAACACGGTTACGCAAA----CTCTCTCTGAGAAAATCCCCAAATCTCATGAAATTA 56 |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| Sbjct 1 AAACAACACGGTTACGTAAACTCTCTCTCTCTGAGAAAATCCCCAAATCTCCTGAAATTA 60 Query 57 GGGTTTCAATCA-T--T----CTTTGAACGCAAAATTAGAAACCTCCTCTCCATCCGCCA 109 |||||||||||| | | ||||||||||||||||||||||||||||||||| ||||| Sbjct 61 GGGTTTCAATCATTCGTAACACTTTGAACGCAAAATTAGAAACCTCCTCTCCATTCGCCA 120 Query 110 CGAATCTCTAGGGTTCTTCTGAAGGATTAGATTTCTGGGTTTTAGAAA--TCTGTCTCTC 167 |||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 121 CGAATCTCTAAGGTTCTTCTGAAGGATTAGATTTCTGGGTTTAAGAAATCTCTCTCTCTC 180 Query 168 GTCATCAACAATTCACGTGATGCCGTCGTTAACACTGAGCATTCGTTTCCTTTTCTTAGT 227 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 GTCATCAACAATTCTCGTGATGCCGTCGTTAACACTGAGCATTCCTTTCCTTTTCTTAGT 240 Query 228 TCTCTGCTTGATCGGTTTACAAGCTGCGGATGATTTCCCAGATAAATCCCGCGGTGACGT 287 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| Sbjct 241 TCTCTGCTTGATCGGTTTACAAGCTGCGGATGATTTCCCAGATAATTCCGGCGGCGACGT 300 Query 288 ATGCCCTCGGGTTAAGGA-TCGGGGTGGATGCACAATCAACTGTTTCCGGGCGGATCCGG 346 |||||||||||| ||| ||||| ||||||| |||||||||||||||| |||||||||| Sbjct 301 CTGCCCTCGGGTTTCGGACTCGGG-TGGATGCCCAATCAACTGTTTCCGAGCGGATCCGG 359 Query 347 TTTGTGGAACCGATGGAGTCACGTACTGGTGCGGTTGTCCCGACGCAGCTTGCCATGGCG 406 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 360 TTTGCGGAGCCGATGGAGTCACGTACTGGTGCGGTTGTCCCGACGCAGCTTGCCATGGTG 419 Query 407 CTCGCGTAGTCAAAAAAGGAGCTTGTGACACAGGTAATGCAGGAAGTGCTTCTGTTCCTG 466 |||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CTCGTGTAATCAAAAGAGGAGCTTGTGACACAGGTAATGCAGGAAGTGCTTCTGTTCCTG 479 Query 467 GACAAGCTTTGTTATTGATTCATATTGTTTGGCTCTTCTTGCTCGGACTCTCTCTTCTCG 526 | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 480 GCCAAGCTTTGTTATTGATTCACATTGTTTGGCTCTTCTTGCTTGGACTCTCTCTTCTCG 539 Query 527 TTGGTGGTTTCTGATCTCTAGAGAGTT-AGTGGTGGAATTAGACAAGGAATT-AGATAGA 584 |||||| ||||| |||||| ||| ||| | ||| ||||||||| || |||| | ||||| Sbjct 540 TTGGTGTTTTCTAATCTCTCGAGTGTTGA-TGGCGGAATTAGAGGAGCAATTGATATAGA 598 Query 585 TCACACGTCCTGAGTTTGTTGTATGTGTATAGTTGAGTATTGTTTTGCTTTGTGTGCTAT 644 |||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||| Sbjct 599 TCACACGTCCTGTGTTTGTT--ATGTGTAGAGCTGAGTATTGTTTTGCTTTGTGTGCTAT 656 Query 645 ATATATGTAATAGATTCTGTTGCA 668 | |||||||||||||||||||||| Sbjct 657 ACATATGTAATAGATTCTGTTGCA 680 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27448500240 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5