BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61980.1
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486705 jgi|Araly1|486705|fgenesh2_kg.5__2697__AT3G61980.1 924 0.0
> Ahg486705 jgi|Araly1|486705|fgenesh2_kg.5__2697__AT3G61980.1
Length=680
Score = 924 bits (500), Expect = 0.0
Identities = 626/684 (92%), Gaps = 20/684 (3%)
Strand=Plus/Plus
Query 1 AAACAACACGGTTACGCAAA----CTCTCTCTGAGAAAATCCCCAAATCTCATGAAATTA 56
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAACAACACGGTTACGTAAACTCTCTCTCTCTGAGAAAATCCCCAAATCTCCTGAAATTA 60
Query 57 GGGTTTCAATCA-T--T----CTTTGAACGCAAAATTAGAAACCTCCTCTCCATCCGCCA 109
|||||||||||| | | ||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GGGTTTCAATCATTCGTAACACTTTGAACGCAAAATTAGAAACCTCCTCTCCATTCGCCA 120
Query 110 CGAATCTCTAGGGTTCTTCTGAAGGATTAGATTTCTGGGTTTTAGAAA--TCTGTCTCTC 167
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 121 CGAATCTCTAAGGTTCTTCTGAAGGATTAGATTTCTGGGTTTAAGAAATCTCTCTCTCTC 180
Query 168 GTCATCAACAATTCACGTGATGCCGTCGTTAACACTGAGCATTCGTTTCCTTTTCTTAGT 227
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GTCATCAACAATTCTCGTGATGCCGTCGTTAACACTGAGCATTCCTTTCCTTTTCTTAGT 240
Query 228 TCTCTGCTTGATCGGTTTACAAGCTGCGGATGATTTCCCAGATAAATCCCGCGGTGACGT 287
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 241 TCTCTGCTTGATCGGTTTACAAGCTGCGGATGATTTCCCAGATAATTCCGGCGGCGACGT 300
Query 288 ATGCCCTCGGGTTAAGGA-TCGGGGTGGATGCACAATCAACTGTTTCCGGGCGGATCCGG 346
|||||||||||| ||| ||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 301 CTGCCCTCGGGTTTCGGACTCGGG-TGGATGCCCAATCAACTGTTTCCGAGCGGATCCGG 359
Query 347 TTTGTGGAACCGATGGAGTCACGTACTGGTGCGGTTGTCCCGACGCAGCTTGCCATGGCG 406
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 TTTGCGGAGCCGATGGAGTCACGTACTGGTGCGGTTGTCCCGACGCAGCTTGCCATGGTG 419
Query 407 CTCGCGTAGTCAAAAAAGGAGCTTGTGACACAGGTAATGCAGGAAGTGCTTCTGTTCCTG 466
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTCGTGTAATCAAAAGAGGAGCTTGTGACACAGGTAATGCAGGAAGTGCTTCTGTTCCTG 479
Query 467 GACAAGCTTTGTTATTGATTCATATTGTTTGGCTCTTCTTGCTCGGACTCTCTCTTCTCG 526
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 480 GCCAAGCTTTGTTATTGATTCACATTGTTTGGCTCTTCTTGCTTGGACTCTCTCTTCTCG 539
Query 527 TTGGTGGTTTCTGATCTCTAGAGAGTT-AGTGGTGGAATTAGACAAGGAATT-AGATAGA 584
|||||| ||||| |||||| ||| ||| | ||| ||||||||| || |||| | |||||
Sbjct 540 TTGGTGTTTTCTAATCTCTCGAGTGTTGA-TGGCGGAATTAGAGGAGCAATTGATATAGA 598
Query 585 TCACACGTCCTGAGTTTGTTGTATGTGTATAGTTGAGTATTGTTTTGCTTTGTGTGCTAT 644
|||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 599 TCACACGTCCTGTGTTTGTT--ATGTGTAGAGCTGAGTATTGTTTTGCTTTGTGTGCTAT 656
Query 645 ATATATGTAATAGATTCTGTTGCA 668
| ||||||||||||||||||||||
Sbjct 657 ACATATGTAATAGATTCTGTTGCA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27448500240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5