BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61990.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486706 jgi|Araly1|486706|fgenesh2_kg.5__2698__AT3G61990.1 1559 0.0
Ahg486707 jgi|Araly1|486707|fgenesh2_kg.5__2699__AT3G62000.1 830 0.0
> Ahg486706 jgi|Araly1|486706|fgenesh2_kg.5__2698__AT3G61990.1
Length=1103
Score = 1559 bits (844), Expect = 0.0
Identities = 1036/1122 (92%), Gaps = 39/1122 (3%)
Strand=Plus/Plus
Query 93 CGTTTTCAAC-GAGCTTTCTTTTCCTTTTGTTGGTTTTCTGCTTGATCGG-TTCACTAGC 150
|||| || || |||||||| |||||||||||||||||||||||| ||||| || ||||||
Sbjct 8 CGTTCTC-ACTGAGCTTTCCTTTCCTTTTGTTGGTTTTCTGCTTTATCGGCTT-ACTAGC 65
Query 151 TGCCGATGATCTCCAACATAAATCCGGTCGG-GACGTCTGCTCCGGTGGTTCTGATCTTA 209
|||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||| ||
Sbjct 66 TGCCGATGATCTCCCACATAAATCCGG-CGGTGACGTCTGCTCCGGGGGTTCTGATCGTA 124
Query 210 GAACCCCCGATATTCGTCTTAACCGGCCGACAG-ACTCTGTCGTCGGAAACTG-CCCGAC 267
|||| ||||||||||| |||||||| ||||| | ||| |||||||||||||| |||| |
Sbjct 125 GAACTCCCGATATTCGACTTAACCGACCGAC-GTCCTCCGTCGTCGGAAACTGCCCCG-C 182
Query 268 GGAGGCGAGTCCTTTAGTTATGGCTGACGACGAGAAGTACGGTAACAAAATGGTTATCAG 327
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GGAGCCGAGTCCTTTAGTTATGGCTGACGACGAGAAGTACGGTAACAAAATGGTTATCAG 242
Query 328 TCTCACTCCTCGCCTTTATGACTATGTCCTCAACAACGTTCGTGAGCATGAGATTTTGAA 387
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct 243 TCTCACTCCTCGCCTTTACGACTATGTCCTCAACAACGTTCGCGAGCATGAGGTTTTGAG 302
Query 388 GCAACTTCGAGAAGAAACTGCCATTAGTCAAATTCAGGTGTCACCTGATCAAGCGCAATT 447
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 303 GCAACTTCGAGAAGAGACTGCTATTAGTCAAATTCAGGTGTCGCCTGATCAAGCGCAATT 362
Query 448 GCTTGCAATGCTTGTAGAGATTCTTGGAGCTA-AACGATGTATTGAAGTTGGAGTTTACA 506
|||||| |||||||| |||||||||||||| | || ||||||||||||||||||||||||
Sbjct 363 GCTTGCGATGCTTGTGGAGATTCTTGGAGC-AGAAAGATGTATTGAAGTTGGAGTTTACA 421
Query 507 CGGGATATTCATCACTGGCTGTGGCGTTGGTTCTACCAGAATCAGGGCGTCTTGTTGCCT 566
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 422 CGGGATATTCATCATTGGCTGTGGCGTTGGTTCTACCAGAATCAGGGCGTCTTGTTGCTT 481
Query 567 GTGATAAAGATGCTAACGCTCTTGAAGTTGCTAAGAGGTACTACGAGCTTGCCGGAGTGT 626
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 482 GTGATAAAGATGCTAACGCTCTTGAAGTTGCTAAGAGGTACTATGAGCTTGCCGGAGTGT 541
Query 627 CTCACAAGGTCACTGTGAAACATGGTCTTGCAGCAGAATCTTTGATGTCTATGATTCAGA 686
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 542 CTCACAAGGTCACTGTGAAGCATGGTCTTGCAGCAGAATCTTTGATCTCTATGATTCAGA 601
Query 687 ACGGTGAAGAGTCCAGCTATGATTTTGCATTTCTTGATGCTGATAAGGCGATGTATCAGG 746
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 602 ACGGTGAAGAGTCCAGCTATGATTTTGCATTTCTCGATGCTGATAAGGATATGTATCAGG 661
Query 747 AGTACTTCGAATCGCTACTTCGACTCGTCAGGGTTGGTGGAGTCATTGTGATTGATAATG 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGTACTTCGAATCGCTACTTCGACTCGTCAGGGTTGGTGGAGTCATTGTGATTGATAATG 721
Query 807 TTCTTTGGCATGGATGGGTTGCGGATTCTACGGTGAATGATGAGAGGACCATCAGCCTAA 866
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 722 TTCTTTGGCATGGATGGGTTGCGGATTCTATGGTAAATGATGAGAGGACCATCAGCCTTA 781
Query 867 GAAATTTCAACAAAAAATTAATGGATGATCAACGTGTAAGCATTAGTATGGTATCAATCG 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GAAATTTCAACAAAAAATTAATGGATGATCAACGTGTAAGCATTAGTATGGTATCAATCG 841
Query 927 GCGATGGTATGACCATATGCCGCAAGAGGTAATCATCCGTAAAAACCACTCAGCTCGCAG 986
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 842 GCGATGGTATGACCATATGCCGCAAGAGGTAATCATCCCTAAAAACCACACAGCTCGCAG 901
Query 987 TGAACCTGTTTCAAGATAGAAGAAGTCTTTAAACATAAAAGGATTGATGAAGCCAAGATA 1046
|| ||||| | ||||| || |||||||| |||||| |||||||||||||||||||||||
Sbjct 902 TGGACCTGATCCAAGA--GA-GAAGTCTTCAAACATTAAAGGATTGATGAAGCCAAGATA 958
Query 1047 TC------CAGTCTCACAAACACTAAAGACTCATCAACTTTTCCCTTTTCAGTCAAAAAT 1100
| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||
Sbjct 959 TATTATTTCAGTCTCACAAACACAAAAGACTTATCAACTTT-CCCTTTTCAGTCAAAA-- 1015
Query 1101 AAGTTGAATAATTGATAAACCAATGTGTGGGCCTATTGGGCTTTGATATGTACTGTTTTC 1160
| | ||| | ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1016 --G---A-TAA---A----CCAATGTGTGGGCTTATTGGGCCTTGATATGTACTGTTTTC 1062
Query 1161 TATGTCCGTTTGAGGCCTTTTATAAAATCGTCTT-ACGACCC 1201
||||||||||| ||||||||||||||||| | || |||||||
Sbjct 1063 TATGTCCGTTTCAGGCCTTTTATAAAATCTT-TTGACGACCC 1103
> Ahg486707 jgi|Araly1|486707|fgenesh2_kg.5__2699__AT3G62000.1
Length=956
Score = 830 bits (449), Expect = 0.0
Identities = 690/802 (86%), Gaps = 34/802 (4%)
Strand=Plus/Plus
Query 252 TCGGAAACTGCCCG--A-CGGAGGC-GAGTCCT-TTAGTTATGGCTGACGACG-AGAAGT 305
||||||||||| || | || ||| || |||| || ||| |||| || |||| | ||||
Sbjct 132 TCGGAAACTGCTCGATAGCGCCGGCGGA-TCCTGTT-GTTGTGGCGGAAGACGTA-AAGT 188
Query 306 ACGGTAACAAA-ATGGTTATCAGTCTCACTCCTCGCCTTTATGACTATGTCCTCAACAAC 364
||||||||||| | ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 189 ACGGTAACAAAGA-GGTTATCAGTCTCACTCCTCGCCTTTACGACTATGTCCTCTCCAAC 247
Query 365 GTTCGTGAGCATGAGATTTTGAAGCAACTTCGAGAAGAAACTGCC---AT------TAGT 415
||||| |||| | ||||||||| ||||||||| ||||| ||| || || ||||
Sbjct 248 GTTCGCGAGCCTAAGATTTTGAGGCAACTTCGGGAAGAGACTTCCAAAATGCGAGGTAGT 307
Query 416 CAAATTCAGGTGTCACCTGATCAAGCGCAATTGCTTGCAATGCTTGTAGAGATTCTTGGA 475
||||| |||||||| ||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 308 CAAATGCAGGTGTCGCCTGATCAAGCGCAATTGCTTGCAATGCTTGTACAGCTGCTTGGA 367
Query 476 GCTA-AACGATGTATTGAAGTTGGAGTTTACACGGGATATTCATCACTGGCTGTGGCGTT 534
|| | || |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 368 GC-AGAAAGATGTATTGAAGTTGGAGTTTACACGGGATATTCATCATTGGCTGTGGCCTT 426
Query 535 GGTTCTACCAGAATCAGGGCGTCTTGTTGCCTGTGATAA-AGATGCTAACGCTCTTGAAG 593
|||||||||||||||||| |||| ||||||||||| || |||| ||||| |||||||||
Sbjct 427 AGTTCTACCAGAATCAGGGTGTCTAGTTGCCTGTGA-AAGAGATTCTAACTCTCTTGAAG 485
Query 594 TTGCTAAGAGGTACTACGAGCTTGCCGGAGTGTCTCACAAGGTCACTGTGAAACATGGTC 653
| ||||||||||||||| |||| || ||||| ||||||||||| | ||||||||||||||
Sbjct 486 TCGCTAAGAGGTACTACAAGCTCGCTGGAGTCTCTCACAAGGTTAATGTGAAACATGGTC 545
Query 654 TTGCAGCAGAATCTTTGATGTCTATGATTCAGAACGGTGAAG-AGTCCAGCTATGATTTT 712
||||||| ||||| |||| || ||||||||||||||||||| | |||||||||||||||
Sbjct 546 TTGCAGCTGAATCATTGAAATCCATGATTCAGAACGGTGAAGGA-TCCAGCTATGATTTT 604
Query 713 GCATTTCTTGATGCTGATAAG-GCGATGTATCAGGAGTACTTCGAATCGCTACTTCGACT 771
|||||| | |||||||||||| | |||||||||||| |||||||||| ||| |||| |||
Sbjct 605 GCATTTGTCGATGCTGATAAGAG-GATGTATCAGGACTACTTCGAATTGCTTCTTCAACT 663
Query 772 CGTCAGGGTTGGTGGAGTCATTGTGATTGATAATGTTCTTTGGCATGGATGGGTTGCGGA 831
||||| |||||||||||||||||||| ||||||||||||||||||||| | ||| ||||
Sbjct 664 TGTCAGAGTTGGTGGAGTCATTGTGATGGATAATGTTCTTTGGCATGGACGAGTTACGGA 723
Query 832 TTCTAC-GGTGAATGATGAGAGGACCATCAGCCTAAGAAATTTCAACAAAAAATTAATGG 890
| || | || |||||||| || ||| |||||| | || |||||||||||||| |||||||
Sbjct 724 TCCT-CTGGCGAATGATGCGAAGACGATCAGCATTAGGAATTTCAACAAAAAGTTAATGG 782
Query 891 ATGATCAACGTGTAAGCATTAGTATGGTATCAATCGGCGATGGTATGACCATATGCCGCA 950
||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 783 ATGATAAACGTGTAAGCATTAGTATGGTACCAATCGGCGATGGCATGACGATATGCCGCA 842
Query 951 AGAGGTAATCATCCGTAAAAACCACTCAGCTCGCAGTGAACCTGTTTCAAGATAGAAGAA 1010
|||| |||||||| | |||||||||| | || || |||||||| | ||||| | | |||
Sbjct 843 AGAGATAATCATCAGGAAAAACCACTTGGGTCACAATGAACCTGATCCAAGA-A-A-GAA 899
Query 1011 GTCTTTAAAC-ATAAAAGGATT 1031
|||||| ||| || ||||||||
Sbjct 900 GTCTTTTAACCATGAAAGGATT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5