BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62000.2
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486707 jgi|Araly1|486707|fgenesh2_kg.5__2699__AT3G62000.1 1471 0.0
Ahg486706 jgi|Araly1|486706|fgenesh2_kg.5__2698__AT3G61990.1 854 0.0
> Ahg486707 jgi|Araly1|486707|fgenesh2_kg.5__2699__AT3G62000.1
Length=956
Score = 1471 bits (796), Expect = 0.0
Identities = 885/927 (95%), Gaps = 10/927 (1%)
Strand=Plus/Plus
Query 27 GGGGAAGCAGAAGATGTCGACCGGTTTAGCTCTGAATCGCTGTTCAG-TTTCGGTATGTA 85
||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1 GGGGAAGCAGAAGATGTTGACCGGTTTAGCTCTGAATCGCTGTTC-GATTTCGGTATGTA 59
Query 86 GAACGGCCGTTACTTTACTTAACCGGCCAACTGTCTCCGTTGCCAGGAGTTTGAAATTCA 145
||||||||| ||||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 60 GAACGGCCGGTACTTTACTTAACCGGCCAACGGTCTCCGTAGTCAGGAGTTTGAAATTCA 119
Query 146 GTCGCCGGCTAATCGGAAACTGCTCGATAGCGCCGGCGGATCCT-TATGTTGTGGCGGAC 204
||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 120 GTCACCGGCTAATCGGAAACTGCTCGATAGCGCCGGCGGATCCTGT-TGTTGTGGCGGAA 178
Query 205 GACGAT-AAGTACGGTAACAAACAAGTTATCAGTCTCACTCCTCGCCTTTACGACTATGT 263
|||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 179 GACG-TAAAGTACGGTAACAAAGAGGTTATCAGTCTCACTCCTCGCCTTTACGACTATGT 237
Query 264 CCTCTCCAACGTCCGCGAGCCTAAGATTTTGAGGCAACTTCGGGAAGAGACTTCCAAAAT 323
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCTCTCCAACGTTCGCGAGCCTAAGATTTTGAGGCAACTTCGGGAAGAGACTTCCAAAAT 297
Query 324 GCGAGGTAGCCAAATGCAGGTGTCGCCTGATCAAGCGCAGTTGCTTGCAATGCTTGTACA 383
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 GCGAGGTAGTCAAATGCAGGTGTCGCCTGATCAAGCGCAATTGCTTGCAATGCTTGTACA 357
Query 384 GATGCTTGCAGCAGAAAGATGTATTGAAGTTGGAGTTTACACGGGATATTCTTCATTGGC 443
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 GCTGCTTGGAGCAGAAAGATGTATTGAAGTTGGAGTTTACACGGGATATTCATCATTGGC 417
Query 444 TGTGGCGTTAGTTCTACCAGAATCAGGGTGTTTAGTTGCCTGTGAAAGAGATTCTAACTC 503
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 418 TGTGGCCTTAGTTCTACCAGAATCAGGGTGTCTAGTTGCCTGTGAAAGAGATTCTAACTC 477
Query 504 TCTTGAAGTTGCTAAGAGGTACTACGAGCTTGCTGGAGTCTCTCACAAGGTTAATGTGAA 563
||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 478 TCTTGAAGTCGCTAAGAGGTACTACAAGCTCGCTGGAGTCTCTCACAAGGTTAATGTGAA 537
Query 564 ACAAGGTCTTGCAGCTGAATCATTGAAATCCATGATTCAGAACGGTGAAGGAGCCAGCTA 623
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 ACATGGTCTTGCAGCTGAATCATTGAAATCCATGATTCAGAACGGTGAAGGATCCAGCTA 597
Query 624 TGATTTTGCATTTGTCGATGCTGATAAGAGGATGTATCAGGACTACTTCGAATTGCTTCT 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGATTTTGCATTTGTCGATGCTGATAAGAGGATGTATCAGGACTACTTCGAATTGCTTCT 657
Query 684 TCAACTTGTCAGAGTTGGTGGAGTCATTGTGATGGATAATGTTCTTTGGCATGGACGAGT 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCAACTTGTCAGAGTTGGTGGAGTCATTGTGATGGATAATGTTCTTTGGCATGGACGAGT 717
Query 744 TTCGGATCCTATGGTGAATGATGCGAAGACCATCAGCATTAGGAATTTCAACAAAAAGTT 803
| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 718 TACGGATCCTCTGGCGAATGATGCGAAGACGATCAGCATTAGGAATTTCAACAAAAAGTT 777
Query 804 AATGGATGATAAACGTGTAAGCATTAGTATGGTAAGTACCGATCGGCGATGGCATGACGA 863
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 778 AATGGATGATAAACGTGTAAGCATTAGTATGGTA----CCAATCGGCGATGGCATGACGA 833
Query 864 TATGCCGCAAGAGATAGTCATCAGGAAAAACCAATTGGGTCACAGTGAACCTGATCCAAG 923
|||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct 834 TATGCCGCAAGAGATAATCATCAGGAAAAACCACTTGGGTCACAATGAACCTGATCCAAG 893
Query 924 AGAGAAGTCTTTTAAACATGAAAGGAT 950
| ||||||||||||| |||||||||||
Sbjct 894 AAAGAAGTCTTTTAACCATGAAAGGAT 920
> Ahg486706 jgi|Araly1|486706|fgenesh2_kg.5__2698__AT3G61990.1
Length=1103
Score = 854 bits (462), Expect = 0.0
Identities = 694/802 (87%), Gaps = 31/802 (4%)
Strand=Plus/Plus
Query 186 TCC-TTATGTTGTGGCGGACGACGATAAGTACGGTAACAAACA-AGTTATCAGTCTCACT 243
||| ||| ||| |||| |||||||| ||||||||||||||| | |||||||||||||||
Sbjct 192 TCCTTTA-GTTATGGCTGACGACGAGAAGTACGGTAACAAA-ATGGTTATCAGTCTCACT 249
Query 244 CCTCGCCTTTACGACTATGTCCTCTCCAACGTCCGCGAGCCTAAGATTTTGAGGCAACTT 303
|||||||||||||||||||||||| |||||| ||||||| | || ||||||||||||||
Sbjct 250 CCTCGCCTTTACGACTATGTCCTCAACAACGTTCGCGAGCATGAGGTTTTGAGGCAACTT 309
Query 304 CGGGAAGAGACTTCCAAAATGCGAGGTAGCCAAATGCAGGTGTCGCCTGATCAAGCGCAG 363
|| ||||||| | ||| | ||| ||||| |||||||||||||||||||||||
Sbjct 310 CGAGAAGAGA----C----TGCTA-TTAGTCAAATTCAGGTGTCGCCTGATCAAGCGCAA 360
Query 364 TTGCTTGCAATGCTTGTACAGATGCTTGCAGCAGAAAGATGTATTGAAGTTGGAGTTTAC 423
|||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct 361 TTGCTTGCGATGCTTGTGGAGATTCTTGGAGCAGAAAGATGTATTGAAGTTGGAGTTTAC 420
Query 424 ACGGGATATTCTTCATTGGCTGTGGCGTTAGTTCTACCAGAATCAGGGTGT-TTAGTTGC 482
||||||||||| ||||||||||||||||| |||||||||||||||||| || || |||||
Sbjct 421 ACGGGATATTCATCATTGGCTGTGGCGTTGGTTCTACCAGAATCAGGGCGTCTT-GTTGC 479
Query 483 CTGTGA-AAGAGATTCTAACTCTCTTGAAGTTGCTAAGAGGTACTACGAGCTTGCTGGAG 541
||||| || |||| ||||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct 480 TTGTGATAA-AGATGCTAACGCTCTTGAAGTTGCTAAGAGGTACTATGAGCTTGCCGGAG 538
Query 542 TCTCTCACAAGGTTAATGTGAAACAAGGTCTTGCAGCTGAATCATTGAAATCCATGATTC 601
| ||||||||||| | |||||| || ||||||||||| ||||| |||| || |||||||
Sbjct 539 TGTCTCACAAGGTCACTGTGAAGCATGGTCTTGCAGCAGAATCTTTGATCTCTATGATTC 598
Query 602 AGAACGGTGAAGGAG-CCAGCTATGATTTTGCATTTGTCGATGCTGATAAG-AGGATGTA 659
|||||||||||| || |||||||||||||||||||| |||||||||||||| | |||||
Sbjct 599 AGAACGGTGAAG-AGTCCAGCTATGATTTTGCATTTCTCGATGCTGATAAGGAT-ATGTA 656
Query 660 TCAGGACTACTTCGAATTGCTTCTTCAACTTGTCAGAGTTGGTGGAGTCATTGTGATGGA 719
|||||| |||||||||| ||| |||| ||| ||||| |||||||||||||||||||| ||
Sbjct 657 TCAGGAGTACTTCGAATCGCTACTTCGACTCGTCAGGGTTGGTGGAGTCATTGTGATTGA 716
Query 720 TAATGTTCTTTGGCATGGACGAGTTTCGGATCCTATGGTGAATGATGCGAAGACCATCAG 779
||||||||||||||||||| | ||| ||||| ||||||| ||||||| || |||||||||
Sbjct 717 TAATGTTCTTTGGCATGGATGGGTTGCGGATTCTATGGTAAATGATGAGAGGACCATCAG 776
Query 780 CATTAGGAATTTCAACAAAAAGTTAATGGATGATAAACGTGTAAGCATTAGTATGGTAAG 839
| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 777 CCTTAGAAATTTCAACAAAAAATTAATGGATGATCAACGTGTAAGCATTAGTATGGTA-- 834
Query 840 TACCGATCGGCGATGGCATGACGATATGCCGCAAGAGATAGTCATCAGGAAAAACCA-AT 898
| | ||||||||||| ||||| |||||||||||||| || ||||| |||||||| |
Sbjct 835 T-CA-ATCGGCGATGGTATGACCATATGCCGCAAGAGGTAATCATCCCTAAAAACCACAC 892
Query 899 TGGGTCACAGTGAACCTGATCCAAGAGAGAAGTCTTTTAAACATGAAAGGATCTCCATGA 958
| || ||||| ||||||||||||||||||||||| |||||| ||||||| | ||||
Sbjct 893 AGC-TCGCAGTGGACCTGATCCAAGAGAGAAGTCTTC-AAACATTAAAGGAT-TG-ATGA 948
Query 959 AGCCAAGATATACATGTTTCAG 980
|||||||||||| | ||||||
Sbjct 949 AGCCAAGATATAT-TATTTCAG 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5