BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62020.1
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486710 jgi|Araly1|486710|fgenesh2_kg.5__2702__AT3G62020.1 1190 0.0
> Ahg486710 jgi|Araly1|486710|fgenesh2_kg.5__2702__AT3G62020.1
Length=781
Score = 1190 bits (644), Expect = 0.0
Identities = 744/791 (94%), Gaps = 11/791 (1%)
Strand=Plus/Plus
Query 1 ATATCACACAGTTTCAAATTAGAGCTTCAAATCTAG-TTACTTGTTCTTCTACAGTACAT 59
|||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 1 ATATCACACAGTTTCAAATTAGAGCTTCGAATCTAGTTTACTTGCTCTTCTACAGTACAT 60
Query 60 CATCAAAAGTCAAAACCATGGACTCGAGATGTTTTGGCTTCTTCTTTACTTTGTTATCTC 119
||||||| | ||||||||||||||||| ||||||||||||| || |||| |||
Sbjct 61 GATCAAAA-T------CATGGACTCGAGATGTTATGGCTTCTTCTTTGCTCTGTTCTCTT 113
Query 120 TAAATGTGATTGTTCTTGCTTACGATCCTGACACACTTCAAGATCTCTGCGTTGCGGATC 179
||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 114 TAACTGTGGTTGCTCTTGCTTACGATCCTGACACGCTTCAAGATCTCTGCGTTGCAGATC 173
Query 180 GCACTTCAGGGATAAAAGTGAATGGTTTCACATGTAAACCCGAATCAAACATCACCGCTT 239
|| |||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 174 GCTCTTCAGGGATCAAAGTGAATGGTTTCACATGTAAGCCGGAATCAAACATCACCGCCT 233
Query 240 CAGATTTTTTCTTCGCCGGAATCGGAAAACCCGCCGTCGTTAACAACACAGTCGGGTCAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CAGATTTTTTCTTCGCCGGAATCGGAAAACCCGCCGTCGTTAACAACACAGTCGGGTCAG 293
Query 300 CCGTCACGGGAGCAAACGTAGAGAAGATCGCAGGGCTTAACACGCTCGGAGTCTCACTCG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CCGTCACGGGAGCAAACGTAGAGAAGATCGCAGGGCTTAACACGCTCGGAGTCTCACTCG 353
Query 360 CGCGTATCGACTACGCTCCCGGAGGTTTAAACCCGCCGCACACGCATCCACGCGCCACCG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 354 CGCGTATCGACTACGCTCCCGGAGGTTTAAACCCGCCGCACACGCATCCACGCGCCACTG 413
Query 420 AAGTGATCTTCGTTTTGGAAGGCGAGCTTGACGTTGGATTCATAACGACGGCGAACAAGC 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 414 AAGTGATCTTCGTTTTGGAAGGCGAGCTTGACGTCGGATTCATAACGACGGCGAACAAGC 473
Query 480 TCTTCGCTAAGACGGTGAAGAAAGGAGAAGTGTTCGTCTTCCCTAGAGGATTGATTCATT 539
| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 474 TATTCGCTAAGACGGTGAAGAAAGGAGAAGTTTTCGTCTTCCCGAGAGGATTGATTCATT 533
Query 540 ACCAGAAAAACAACGACAAAGCGAAACCGGCGTCGGTGATCTCTGCGTTCAACAGTCAAT 599
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 534 ACCAGAAGAACAACGACAAAGCGAAACCTGCGTCGGTGATCTCTGCGTTCAACAGTCAGT 593
Query 600 TACCGGGAACACAATCGATCGCCGCCACGCTATTCACAGCCACTCCGGCGATTCCGGATC 659
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 594 TACCGGGAACACAATCGATTGCCGCCACGCTATTCACGGCCACTCCGGCGATTCCGGATC 653
Query 660 ACGTTTTAACGACGACGTTTCAAATCGGAACGAAAGAAATCGAAAAAATCAAATCTAAGT 719
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 654 ACGTTTTAACGACGGCGTTTCAGATCGGAACGAAAGAAATCGAAAAGATCAAATCCAAGT 713
Query 720 TTGCTCCCAAGAAAGTCTAAAAATCGCGTCGttatatatatatattttaaattttattaa 779
|||||||||||||||||||||||| |||| || | |||||||||||| |||||||||||
Sbjct 714 TTGCTCCCAAGAAAGTCTAAAAATTGCGT--TTGT-TATATATATTTTTAATTTTATTAA 770
Query 780 ttggtttttaa 790
|| ||||||||
Sbjct 771 TTTGTTTTTAA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30460210683
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5