BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62030.2
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486711 jgi|Araly1|486711|fgenesh2_kg.5__2703__AT3G62030.1 1467 0.0
Ahg939243 jgi|Araly1|939243|scaffold_503434.1 606 9e-173
Ahg939178 jgi|Araly1|939178|scaffold_503369.1 111 9e-24
> Ahg486711 jgi|Araly1|486711|fgenesh2_kg.5__2703__AT3G62030.1
Length=901
Score = 1467 bits (794), Expect = 0.0
Identities = 868/904 (96%), Gaps = 3/904 (0%)
Strand=Plus/Plus
Query 214 ATTGGGTTCGGTGTTAAGTCGCAATTAGTTTCTGCAAATCGAACAACTCAATCAGTTTGC 273
|||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1 ATTGGGTTCGTTGTTAAGTCGCAATTAGTTTCCGCAAATCGAACATCTCAATCAGTTTGC 60
Query 274 TTTGGAGCTCGTTCCTCTGGAATTGCATTATCTTCGAGATTGCACTATGCATCACCCATT 333
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGGAGCTCGTTCCTCTGGAATTGCATTATCTTCGAGATTGCACTATGCATCACCCATT 120
Query 334 AAGCAATTTTCTGGGGTTTATGCGACCACCAAGCATCAGAGAACCGCTTGTGTTAAATCC 393
||||||||||| || ||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 AAGCAATTTTCCGGAGTTCATGCGACCACCAAGCACCAGAGAACTGCTTGTGTTAAATCC 180
Query 394 ATGGCTGCTGAGGAAGAAGAAGTAATCGAACCTCAAGCTAAAGTGACAAACAAGGTTTAC 453
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ATGGCGGCTGAGGAAGAGGAAGTAATAGAACCTCAAGCTAAAGTGACAAACAAGGTTTAC 240
Query 454 TTTGATGTGGAAATTGGAGGTGAAGTTGCTGGCAGAATTGTGATGGGTCTCTTTGGAGAA 513
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TTTGATGTGGAAATTGGAGGTGAAGTTGCTGGAAGAATTGTGATGGGTCTCTTTGGAGAA 300
Query 514 GTTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGTGAGAAGAAATACGGG 573
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ATTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGTGAGAAAAAATACGGG 360
Query 574 TACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCAAGGAGGTGATTTC 633
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 TACAAGGGTTCCTCTTTCCATCGTATTATCAAGGATTTCATGATCCAAGGAGGTGATTTC 420
Query 634 ACCGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAAGTTCGAAGATGAAAAC 693
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 ACTGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAAGTTTGAAGATGAAAAC 480
Query 694 TTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAACGCTGGTCCTAATACT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAACGCTGGTCCTAATACT 540
Query 754 AATGGAAGCCAGTTTTTCATTTGTACCGTCAAGACTTCATGGTTAGATAACAAGCATGTC 813
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 541 AATGGAAGCCAGTTTTTCATTTGCACTGTCAAGACTCCATGGTTAGATAACAAGCATGTT 600
Query 814 GTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGACTCTTGAGTCTCAAGAGACT 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGACTCTTGAGTCTCAAGAGACA 660
Query 874 CGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTA 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTA 720
Query 934 GATGCTTGATAATCACTATTGACCGATGCATTGTCTTTGCCATCTTTGTTCTGTTTTTTG 993
|| ||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 721 GAAGCTTGATAATCACCATTGACCGGTGCATTGTCATTGCGATCTTTGTTCTGTTTTTTA 780
Query 994 CTATTATGACTATTGAGGAATCCAAACCATCAAAAAGCCAAAGATTTTCAAATTCTGGTC 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTATTATGACTATTGAGGAATCCAAACCATCAAAAAGCCAAAGATTTTCAAATTCTGGTC 840
Query 1054 TTTTATTTATTATATATTTCGGATACATGAGTTATAAGTTCTTTTAATCGATGTGGGATT 1113
|||| |||||| ||| || ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 841 TTTTGTTTATT-TAT-TT-CGGATACATGAGTTAAAAGTTCTTTTAATCGATGTGGAATT 897
Query 1114 CTTA 1117
|||
Sbjct 898 GTTA 901
> Ahg939243 jgi|Araly1|939243|scaffold_503434.1
Length=1777
Score = 606 bits (328), Expect = 9e-173
Identities = 444/497 (89%), Gaps = 19/497 (4%)
Strand=Plus/Plus
Query 380 CTTGTGTTAAATCCATGGCT-GCTGAGGAAGAAGAAGTAATCGAACCTCAAGCTAAAGTG 438
||||||||||||| |||| | || |||||||||||| || | || |||||||||||||||
Sbjct 1226 CTTGTGTTAAATCAATGG-TGGCGGAGGAAGAAGAAATACTAGAGCCTCAAGCTAAAGTG 1284
Query 439 ACAAACAAGGTTTACTTTGATGTGGAAATTGGAGGTGAAGTTGCTGGCAGAATTGTGATG 498
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1285 ACAAGCAAGGTTTACTTTGATGTGGAAATTGGAGGTGAAGTTGCTGGAAGAATTGTGATG 1344
Query 499 GGTCTCTTTGGAGAAGTTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGT 558
|||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||
Sbjct 1345 GGTCTCTTTGGAGAAGTTGTGCCTAAAACCGTTGAAAAATTTCGTGTCTTGTGTACTGGT 1404
Query 559 GAGAAGAAA-TACGGGTACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGAT 617
||||| ||| || |||||||||||||| || ||||| ||||| || || | |
Sbjct 1405 GAGAA-AAATTATGGGTACAAGGGTTCTTCCTTCCACCGTATCATCAA-G-------G-- 1453
Query 618 CCAAGGAGGTGATTTCACCGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAA 677
|||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||
Sbjct 1454 --AAGGAGGTGATTTCACCGAGGGAAATGGCACTGGAGGTATAAGTGTCTACGGTGCCAA 1511
Query 678 GTTCGAAGATGAAAACTTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAA 737
|| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1512 CTTTGAAGTTGAAAACTTCACCCTGAAGCATACTGGAGCTGGAATCTTGAGCATGGCAAA 1571
Query 738 CGCTGGTCCTAATACTAAT---GGAAGCCAGTTTTTCATTTGTACCGTCAAGACTTCATG 794
||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||
Sbjct 1572 CGCTGGTCCTAATACTAATAATGGAAGCCAGATTTTCATTTGCACCGTCAAGACTCCATG 1631
Query 795 GTTAGATAACAAGCATGTCGTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGAC 854
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 1632 GTTAGATAACAAGCATGTTGTGTTTGGACAAGTCATTGAAGGTATGAAGCTTGTGAGGAC 1691
Query 855 TCTTGAGTCTCAAGAGA 871
||||| ||||| ||||
Sbjct 1692 ACTTGAATCTCAGGAGA 1708
> Ahg939178 jgi|Araly1|939178|scaffold_503369.1
Length=1099
Score = 111 bits (60), Expect = 9e-24
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 561 GAAGAAATACGGGTACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCA 620
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GAAGAAATACGGATACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCA 1081
Query 621 AGGAGG 626
| ||||
Sbjct 1082 ATGAGG 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5