BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62050.1

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939278 jgi|Araly1|939278|scaffold_503469.1                        442    1e-123


> Ahg939278 jgi|Araly1|939278|scaffold_503469.1
Length=468

 Score =  442 bits (239),  Expect = 1e-123
 Identities = 353/408 (87%), Gaps = 7/408 (2%)
 Strand=Plus/Plus

Query  36   TCTCTCAATCAATCCGGTAAAACAATGTCTGATATTTTCCCCGGCGACTT-CGCAGCGGC  94
            |||||| |||||||||| |||||||||||||   |||| |||||||| || |||||||||
Sbjct  2    TCTCTCTATCAATCCGGCAAAACAATGTCTG--CTTTT-CCCGGCGA-TTACGCAGCGGC  57

Query  95   TGAGACAGGCATCTTCTGGGACATAGAAGATTGCAAGATCCCTGATGATCTCAATGCTGG  154
            ||||||||| ||||| |||||||||||||||||||||||   || ||| ||||||||| |
Sbjct  58   TGAGACAGGTATCTTTTGGGACATAGAAGATTGCAAGATTGATGTTGACCTCAATGCTAG  117

Query  155  TGATGCTTTGAAGAACATTAAATCGGCCCTTTCGAGTGATGGTCATCATGGTACGGTCTC  214
            | | | |||| |||||||||||| | || ||||||| | |||||||||||| ||||||||
Sbjct  118  TCAGGTTTTGCAGAACATTAAATTGACCATTTCGAGGGCTGGTCATCATGGAACGGTCTC  177

Query  215  AGTAAGGGCTTATGGTGATACGACCGGTCTTGACTTTCCTTCTGAGGGCATTAAGCTCAA  274
            | ||||||| |||||||||| ||| |||| ||| ||||| |||||||| |||||||||||
Sbjct  178  AATAAGGGCGTATGGTGATATGACTGGTCATGAGTTTCCCTCTGAGGGAATTAAGCTCAA  237

Query  275  TCACTTCCCCGCAGGAGAGAGATACGCGAGACAGACCAAGATGCTTGAAGACATCGTTTC  334
            ||||||||| ||||||||||| |||||||||||  | |||||||||||||||||| || |
Sbjct  238  TCACTTCCCTGCAGGAGAGAGGTACGCGAGACATTCGAAGATGCTTGAAGACATCATTGC  297

Query  335  CTGGTCAGCTGAACATCCTGAACCGTCAACTTTGTTCCTAATCGTTG-GAGACACCTCAC  393
             |||||||||||||||||| |||| |||| |||| | ||||||  ||  ||||||||| |
Sbjct  298  ATGGTCAGCTGAACATCCTCAACCATCAAATTTGATGCTAATC-ATGAAAGACACCTCTC  356

Query  394  GAGACTTCCTCGACGTTGTTCAACTTTTGAAATCCAAGAAAAATTACA  441
             ||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  357  CAGACTTCATCGAGGTTGTTCAACTTTTGAAATCCAAGAAAAATTACA  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22378152279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5