BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62060.1
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486713 jgi|Araly1|486713|fgenesh2_kg.5__2705__AT3G62060.1 2475 0.0
Ahg897833 jgi|Araly1|897833|Al_scaffold_0005_1799 1343 0.0
Ahg939178 jgi|Araly1|939178|scaffold_503369.1 1299 0.0
Ahg937789 jgi|Araly1|937789|scaffold_501980.1 501 6e-141
> Ahg486713 jgi|Araly1|486713|fgenesh2_kg.5__2705__AT3G62060.1
Length=1612
Score = 2475 bits (1340), Expect = 0.0
Identities = 1542/1636 (94%), Gaps = 27/1636 (2%)
Strand=Plus/Plus
Query 6 ttttctttttcaaaatcatttttattttCGACTTCATGCAAGTGATAAAAGACTAAAGTG 65
|||||||||||||| ||||||||||||| | ||||||||||||||| ||| ||||||| |
Sbjct 1 TTTTCTTTTTCAAATTCATTTTTATTTTTGTCTTCATGCAAGTGAT-AAACACTAAAGAG 59
Query 66 TAAGACTAATAAGACTATCGTCATCGATCCTTAATCCAAATTTTCGCGCTCGATTCGTCT 125
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAAGACTAA-AAGACTATCGTAATCGATCCTTAATCCAAATTTTCGCGCTCGATTCGTCT 118
Query 126 TTTCTGTATCTCCCGGAGCTCCGGGACTTGGGCGGAAGAGGAGATGAGGAGCTTGTTGTT 185
| ||||||||||||||| | ||||||| | |||||||||| ||| |||||||
Sbjct 119 TCTCTGTATCTCCCGGA-------G-CTTGGGC-G--GAGGAGATGAAAAGCGTGTTGTT 167
Query 186 GTGGATTGCGGTGGTCGTGTGCTTGCTATGTTCAGTCGCGGCGGTGGTTCAAAGCGGATC 245
|||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 168 GTGGGTTGCGGTGGTCGTGTGCTTGCTATGTTCAGTCACGGCGGTGATTCGGAGCGGATC 227
Query 246 TAGCGACGGATTTGGGAAACCCAGAGATACTGAGACTGCGATATCTTTTCTGGAGTATAA 305
|||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||
Sbjct 228 TAGCGATGGATTTGGGAAACCCATAGATACTGATACTGCGATATCTTTGCTGGAGTATAA 287
Query 306 ATTGATGGCGCCTTCGGTTCCAATGATACCTCTCACCTTGATTC-ACGGAGCTGACTCTA 364
||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 288 ATTGATGGCGCCTTCGGTTCCAATGGTACCTCTCACCTTGATTCGA-GGAGCTGACTCTA 346
Query 365 AAGGAGCTGTGTGCTTAGATGGGACGCTACCTGGTTATCATCTAGATCGTGGTTTTGGAT 424
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 347 AAGGAGCTGTGTGCTTAGATGGGACACTACCTGGTTATCATTTAGATCGTGGTTTTGGAT 406
Query 425 CAGGTGCTAACAGTTGGCTTATCCAGCTTGAGGGTGGAGGATGGTGTAACAACCATAGGA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CAGGTGCTAACAGTTGGCTTATCCAGCTTGAGGGTGGAGGATGGTGTAACAACCATAGGA 466
Query 485 GCTGTGTGTATCGCAAAACAAGTCGACGTGGTTCCTCTAAATTCATGGAAAAAGCTTTGG 544
||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 467 GCTGTGTTTATCGCAAAACAAGTCGGCGTGGTTCCCCTAAATTCATGGAAAAAGCTTTGG 526
Query 545 CCTTCACTGGAATTTTGAGCAATAGATCTGAAGAGAATCCTGACTTCTTTAATTGGAACA 604
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 527 CCTTCACTGGAATTTTGAGCAATAAATCTGAAGAGAATCCTGACTTCTTTAATTGGAACA 586
Query 605 GGATCAAGTTGCGTTACTGCGATGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTT 664
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 587 GGATCAAGTTGCGCTACTGTGATGGTGCGTCTTTCTCTGGCGATAGTCAGGACGAGAGTT 646
Query 665 CGCAACTTTTCTATCGAGGACAACGAATCTGGCAAGTGGCTATGGAAGAATTCCTGTCTT 724
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CTCAACTTTTCTATCGAGGACAACGAATCTGGCAAGTGGCTATGGAAGAATTCCTGTCTT 706
Query 725 TAGGCATGAAGCAAGCAAACCAGGCTCTGCTCTCTGGATGTTCAGCTGGAGGATTAGCTT 784
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 707 TAGGAATGAAGCAAGCAAACCAGGCTCTGCTTTCTGGATGTTCAGCTGGAGGATTAGCTT 766
Query 785 CTATTTTGCACTGTGATGAGTTCAGGGAACTATTACCTAGTTCCACGAAAGTAAAATGCT 844
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CCATTTTGCACTGTGATGAGTTCAGGGAACTATTACCTAGTTCCACGAAAGTAAAATGCT 826
Query 845 TAAGTGATGCTGGAATGTTTCTGGACT-CAGTGGATGTCTCTGGGGGCCACTCGCTTAGG 903
||||||| ||||||||||||||||| | |||| ||||||||||| |||||||| ||||||
Sbjct 827 TAAGTGACGCTGGAATGTTTCTGGA-TGCAGTAGATGTCTCTGGTGGCCACTCACTTAGG 885
Query 904 AATATGTTCCAAGGTGTTGTTACAGTGCAGAACCTCCAAAAGGACTTGTCCAGTACTTGT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AATATGTTCCAAGGTGTTGTTACAGTGCAGAACCTCCAAAAGGACTTGTCCAGTACTTGT 945
Query 964 ACAAACCATTTGGATCCTACTTCGTGCTTTTTTCCCCAGAACTTGGTTTCAGACATTAAA 1023
||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 946 ACAAACCATTTGGATCCTACTTCGTGCTTCTTTCCACAGAACCTGGTTTCAGACATTAAA 1005
Query 1024 ACCCCAATGTTTCTTCTCAACACAGCATATGACTCTTGGCAGATCCAAGAGAGCTTAGCT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ACCCCAATGTTTCTTCTCAACACAGCATATGACTCTTGGCAGATCCAAGAGAGCTTAGCT 1065
Query 1084 CCTCCTACTGCTGATCCAGGCGGTATCTGGAAGGCATGCAAATCAGATCACTCGCGATGT 1143
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1066 CCTCCAACTGCTGATCCAGGTGGCATCTGGAAGGCATGCAAATCAGATCACTCGCGATGT 1125
Query 1144 AATTCATCACAGATCCAATTCTTCCAAGAATTCAGGAATCAAATGCTGTTTGCTGTAAAC 1203
|||||||| ||||||||||| ||| |||||||||||| |||||| || |||||||||||
Sbjct 1126 AATTCATCGCAGATCCAATTTTTCGAAGAATTCAGGACCCAAATGGTGCTTGCTGTAAAC 1185
Query 1204 TCATTCTCAAACTCTGACCAGAACGGTCTTTATATAAACTCTTGCTTCGCGCATTGTCAG 1263
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1186 TCATTTTCAAACTCTGACCAGAACGGTCTTTATATAAACTCTTGCTTCGCCCATTGTCAG 1245
Query 1264 ACTGAAAGACAGGACACTTGGTTTGCTCAAGATTCTCCTCAACTAAACGGAAAGAGAGTC 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 ACTGAAAGACAGGACACTTGGTTTGCTCAAGATTCTCCTCAACTAAACGGAAAGAGAGTA 1305
Query 1324 GCAGAGTCTGTAGGTGACTGGTACTTCGACCGAGCAAAAAATGTCAAAGCTATCGATTGT 1383
|||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||
Sbjct 1306 GCAGAGTCTGTAGGTGACTGGTACTTCGACCGGGCAAACAATGTCAAAGCCATCGACTGT 1365
Query 1384 CCTTACCCTTGTGACACAACATGTCACAATCTGATTTTCGAGTGAGTAAATCGTTGAACC 1443
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1366 CCTTACCCGTGTGACACAACATGTCACAATCTGATTTTCGAGTGAGTAAATCGTTAAACC 1425
Query 1444 CCATTTCTCTGATTCTTTCAAACTTATAAGTTATACCATTATTGCCTT-AAATTCCTTCC 1502
|||||||||||||||||||||||||||| |||||||||| || ||| |||||||
Sbjct 1426 CCATTTCTCTGATTCTTTCAAACTTATA-------CCATTATTGC-TTCAAAATCCTTCC 1477
Query 1503 ATATTTATCCTAACTTCCAAATGTGCAACATTTGTGTATCTCAAATGAGAATCATTTAGT 1562
|||||||||||||||||||||| || || ||| |||||||||||||||||||||||| ||
Sbjct 1478 ATATTTATCCTAACTTCCAAATCTGTAATATTGGTGTATCTCAAATGAGAATCATTTTGT 1537
Query 1563 TTGTCGATTCAGATCATAATTTATATTTGCATGACCTTGATTTTTCGATTGAAATAAGCT 1622
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1538 TTGTCGATTCAGATCATAATTTATATTTGTATGAC-TTCATTTTTCGATTGAAATAAGCT 1596
Query 1623 TTCTTTCGATGTTTAT 1638
||||||||||||||||
Sbjct 1597 TTCTTTCGATGTTTAT 1612
> Ahg897833 jgi|Araly1|897833|Al_scaffold_0005_1799
Length=876
Score = 1343 bits (727), Expect = 0.0
Identities = 800/836 (96%), Gaps = 2/836 (0%)
Strand=Plus/Plus
Query 268 AGAGATACTGAGACTGCGATATCTTTTCTGGAGTATAAATTGATGGCGCCTTCGGTTCCA 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 AGAGATACTGAGACTGCGATATCTTTTCTGGAGTATAAATTGATGGCGCCTTCGGTTCCA 81
Query 328 ATGATACCTCTCACCTTGATTCACGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGG 387
||| | |||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 82 ATGGTGCCTCTCACTTTGATTGAGGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGG 141
Query 388 ACGCTACCTGGTTATCATCTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATC 447
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 142 ACGCTACCTGGTTATCATTTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCCTATC 201
Query 448 CAGCTTGAGGGTGGAGGATGGTGTAACAACCATAGGAGCTGTGTGTATCGCAAAACAAGT 507
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 202 CACCTTGAGGGTGGAGGATGGTGTAACAACCATAGGAGCTGTGTATATCGCAAAACAAGT 261
Query 508 -CGACGTGGTTCCTCTAAATTCATGGAAAAAGCTTTGGCCTTCACTGGAATTTTGAGCAA 566
|| |||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 262 CCG-CGTGGTTCTTCTAAGTTCATGGAAAAAGCTTTGCCCTTCACTGGAATATTGAGCAA 320
Query 567 TAGATCTGAAGAGAATCCTGACTTCTTTAATTGGAACAGGATCAAGTTGCGTTACTGCGA 626
|| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 321 TAAACCTGAAGAGAATCCTGACTTCTTTCATTGGAACAGGATCAAGTTGCGCTACTGTGA 380
Query 627 TGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTTCGCAACTTTTCTATCGAGGACA 686
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 381 TGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTTCGCAAATTTTCTATCGAGGACA 440
Query 687 ACGAATCTGGCAAGTGGCTATGGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCA 746
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACGAATCTGGCAAATGGCTATGGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCA 500
Query 747 GGCTCTGCTCTCTGGATGTTCAGCTGGAGGATTAGCTTCTATTTTGCACTGTGATGAGTT 806
||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 501 GGCTCTGCTTTCTGGATGTTCAGCTGGAGGATTAGCTTCCATCTTGCACTGTGATGAGTA 560
Query 807 CAGGGAACTATTACCTAGTTCCACGAAAGTAAAATGCTTAAGTGATGCTGGAATGTTTCT 866
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 561 CATGGAACTATTACCTAGTTCCAGGAAAGTAAAATGCTTAAGTGACGCTGGAATGTTTCT 620
Query 867 GGACTCAGTGGATGTCTCTGGGGGCCACTCGCTTAGGAATATGTTCCAAGGTGTTGTTAC 926
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TGACGCAGTGGATGTCTCTGGGGGCCACTCGCTTAGGAATATGTTCCAAGGTGTTGTTAC 680
Query 927 AGTGCAGAACCTCCAAAAGGACTTGTCCAGTACTTGTACAAACCATTTGGATCCTACTTC 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AGTGCAGAACCTCCAAAAGGACTTGTCCAGTACTTGTACAAACCATTTGGATCCTACTTC 740
Query 987 GTGCTTTTTTCCCCAGAACTTGGTTTCAGACATTAAAACCCCAATGTTTCTTCTCAACAC 1046
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 741 GTGCTTCTTTCCTCAGAACTTGGTTTCAGACATCAAAACCCCAATGTTTCTTCTCAACAC 800
Query 1047 AGCATATGACTCTTGGCAGATCCAAGAGAGCTTAGCTCCTCCTACTGCTGATCCAG 1102
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 801 AGCATATGACTCGTGGCAGATCCAAGAGAGCTTAGCTCCTCCAACTGCTGATCCAG 856
> Ahg939178 jgi|Araly1|939178|scaffold_503369.1
Length=1099
Score = 1299 bits (703), Expect = 0.0
Identities = 778/815 (95%), Gaps = 2/815 (0%)
Strand=Plus/Plus
Query 289 TCTTTTCTGGAGTATAAATTGATGGCGCCTTCGGTTCCAATGATACCTCTCACCTTGATT 348
|||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1 TCTTTTCTGGAGTAGAAATTGATGGCGCCTTCGGTTCCAATGGTGCCTCTCACTTTGATT 60
Query 349 CACGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGGACGCTACCTGGTTATCATCTA 408
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GAGGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGGACGCTACCTGGTTATCATTTA 120
Query 409 GATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCTTATCCAGCTTGAGGGTGGAGGATGG 468
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 121 GATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCCTATCCACCTTGAGGGTGGAGGATGG 180
Query 469 TGTAACAACCATAGGAGCTGTGTGTATCGCAAAACAAGT-CGACGTGGTTCCTCTAAATT 527
||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||| ||
Sbjct 181 TGTAACAACCATAGGAGCTGTGTATATCGCAAAACAAGTCCG-CGTGGTTCTTCTAAGTT 239
Query 528 CATGGAAAAAGCTTTGGCCTTCACTGGAATTTTGAGCAATAGATCTGAAGAGAATCCTGA 587
|||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 240 CATGGAAAAAGCTTTGCCCTTCACTGGAATATTGAGCAATAAACCTGAAGAGAATCCTGA 299
Query 588 CTTCTTTAATTGGAACAGGATCAAGTTGCGTTACTGCGATGGTGCGTCTTTCTCTGGTGA 647
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 300 CTTCTTTAATTGGAACAGGATCAAGTTGCGCTACTGTGATGGTGCGTCTTTCTCTGGTGA 359
Query 648 TAGTCAGGACGAGAGTTCGCAACTTTTCTATCGAGGACAACGAATCTGGCAAGTGGCTAT 707
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 TAGTCAGGACGAGAGTTCACAAATTTTCTATCGAGGACAACGAATCTGGCAAGTGGCTAT 419
Query 708 GGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCAGGCTCTGCTCTCTGGATGTTC 767
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCAGGCTCTGCTTTCTGGATGTTC 479
Query 768 AGCTGGAGGATTAGCTTCTATTTTGCACTGTGATGAGTTCAGGGAACTATTACCTAGTTC 827
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 480 AGCTGGAGGATTAGCTTCCATCTTGCACTGTGATGAGTACAGGGAACTATTACCTAGTTC 539
Query 828 CACGAAAGTAAAATGCTTAAGTGATGCTGGAATGTTTCTGGACTCAGTGGATGTCTCTGG 887
|| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct 540 CAGGAAAGTAAAATGCTTAAGTGACGCTGGAATGTTTCTTGACGCAGTGGATGTCTCTGG 599
Query 888 GGGCCACTCGCTTAGGAATATGTTCCAAGGTGTTGTTACAGTGCAGAACCTCCAAAAGGA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGGCCACTCGCTTAGGAATATGTTCCAAGGTGTTGTTACAGTGCAGAACCTCCAAAAGGA 659
Query 948 CTTGTCCAGTACTTGTACAAACCATTTGGATCCTACTTCGTGCTTTTTTCCCCAGAACTT 1007
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 660 CTTTTCCAGTACTTGTACAAACCATTTGGATCCTACTTCGTGCTTCTTTCCTCAGAACTT 719
Query 1008 GGTTTCAGACATTAAAACCCCAATGTTTCTTCTCAACACAGCATATGACTCTTGGCAGAT 1067
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 GGTTTCAGACATCAAAACCCCAATGTTTCTTCTCAACACAGCATATGACTCGTGGCAGAT 779
Query 1068 CCAAGAGAGCTTAGCTCCTCCTACTGCTGATCCAG 1102
|||| |||||||||||||||| |||||||||||||
Sbjct 780 CCAACAGAGCTTAGCTCCTCCAACTGCTGATCCAG 814
Score = 226 bits (122), Expect = 4e-58
Identities = 157/173 (91%), Gaps = 5/173 (3%)
Strand=Plus/Plus
Query 1149 ATCACAGATCCAATTCTTCCAAGAATTCAGGAATCAAATGCTGTTTGCTGTAAACTCATT 1208
||| ||||| |||||||||||| ||||||||| |||||| || ||||||||||| ||||
Sbjct 809 ATC-CAGAT-CAATTCTTCCAACAATTCAGGACCCAAATGGTGCTTGCTGTAAACGCATT 866
Query 1209 CTCAAACTCTGACCAGA---ACGGTCTTTATATAAACTCTTGCTTCGCGCATTGTCAGAC 1265
||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||
Sbjct 867 CTCAAACTCTGACCAGACCGGCGGTCTTTATATAAACTCTTGCTTTGCGCATAGTCAGAC 926
Query 1266 TGAAAGACAGGACACTTGGTTTGCTCAAGATTCTCCTCAACTAAACGGAAAGA 1318
||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 927 TGAAAGACATGACACTTGGTTTGCTCAAGATTCTCCTCGACTAAACGGAAAGA 979
> Ahg937789 jgi|Araly1|937789|scaffold_501980.1
Length=523
Score = 501 bits (271), Expect = 6e-141
Identities = 281/286 (98%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 584 CTGACTTCTTTAATTGGAACAGGATCAAGTTGCGTTACTGCGATGGTGCGTCTTTCTCTG 643
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 209 CTGACTTCTTTAATTGGAACAGGATCAAGTTGCGTTACTGCGATGGTGCATCTTTCTCTG 268
Query 644 GTGATAGTCAGGACGAGAGTTCGCAACTTTTCTATCGAGGACAACGAATCTGGCAAGTGG 703
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 269 GTGATAGTCAGGACGAGAGTTCGCAACTTTTCTATCGAGGACAACGAATTTGGCAAGTGG 328
Query 704 CTATGGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCAGGCTCTGCTCTCTGGAT 763
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 329 CTATGGAAGAATTCCTGTCTTTAGGCATGAAGCAAGCAAACCAGGCTCTGCTTTCTGGAT 388
Query 764 GTTCAGCTGGAGGATTAGCTTCTATTTTGCACTGTGATGAGTTCAGGGAACTATTACCTA 823
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 389 GTTCAGCTGGAGGATTAGCTTCCATCTTGCACTGTGATGAGTTCAGGGAACTATTACCTA 448
Query 824 GTTCCACGAAAGTAAAATGCTTAAGTGATGCTGGAATGTTTCTGGA 869
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GTTCCACGAAAGTAAAATGCTTAAGTGATGCTGGAATGTTTCTGGA 494
Score = 281 bits (152), Expect = 9e-75
Identities = 204/226 (90%), Gaps = 15/226 (7%)
Strand=Plus/Plus
Query 148 GGGACTTGGGCGGAAGAGGAGATGAGGAGCTTGTTGTTGTGGATTGCGGTGGTCGTGTGC 207
|||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1 GGGACTTGGGCGGAGGAGGAGATGAGGAGCGTGTTGGTGTGGATTGCGGTGGTCGTGTGC 60
Query 208 TTGCTATGTTCAGTCGCGGCGGTGGTTCAAAGCGGATCTAGCGACGGATTTGGGAAACCC 267
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTGCTATGTTCAGTCGCGGCGGTGGTTCAAAGCGGATCTAGCGATGGATTTGGGAAACCC 120
Query 268 AGAGATACTGAGACTGCGATATCTTTTCTGGAGTATAAATTGATGGCGCCTTCGGTTCCA 327
|||||||||||||||| | | |||||||||||||||| ||||||||||
Sbjct 121 AGAGATACTGAGACTG--A----------G---TATAAATTGATGGCGCATTCGGTTCCA 165
Query 328 ATGATACCTCTCACCTTGATTCACGGAGCTGACTCTAAAGGAGCTG 373
||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 166 ATGGTACCTCTCACCTTGATTCAGGGAGCTGACTCTAAAGGAGCTG 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5