BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62070.1 Length=1290 Score E Sequences producing significant alignments: (Bits) Value Ahg349267 jgi|Araly1|349267|fgenesh1_pg.C_scaffold_5002659 830 0.0 Ahg483864 jgi|Araly1|483864|fgenesh2_kg.4__2924__AT2G46940.1 99.0 8e-20 > Ahg349267 jgi|Araly1|349267|fgenesh1_pg.C_scaffold_5002659 Length=741 Score = 830 bits (449), Expect = 0.0 Identities = 570/624 (91%), Gaps = 26/624 (4%) Strand=Plus/Plus Query 32 ATGGCGTTCGAAGAGAGCTTAGTAATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACG 91 |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGTTGGACGAGAGCTTAGTGATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACG 60 Query 92 AGCTCTGC-T---T-A-C---GACGAAGCAGCCACGAAGAATCAACCAGATTCGTGTGTT 142 |||||||| | | | | ||||||||||||||||||||||| | ||||||||||||| Sbjct 61 AGCTCTGCTTACGTCACCGAAGACGAAGCAGCCACGAAGAATCATCTAGATTCGTGTGTT 120 Query 143 TCCACATCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGGGAAGTTTCCGATGATGGA 202 | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 121 TTCACGTCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGAGAAGTTTCCGATGATGGA 180 Query 203 GAAGGAAAAGAGAACGTTCGAGAGTCAGATTCCGACAAAGAGACACGTGGGTTTTACTCT 262 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 GAAGGAAAAGAGAACGTTCGAGAGTCTGATTCCGACAAAGAGACACGTGGGTTTTACTCT 240 Query 263 CTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTTAGATGCG 322 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 241 CTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCAGGCGAGTTAGATGCG 300 Query 323 AATGAGAGTAACAAAAATGGCAGTAAGTGTAGTTTACGGAGGCAAA---GG--AG---GG 374 ||||||||||||| | | ||| |||||||||||||||||||||||| || || || Sbjct 301 AATGAGAGTAACAGAGACGGCGGTAAGTGTAGTTTACGGAGGCAAAAAAGGTTAGTAAGG 360 Query 375 -AAAAGAAGAAAAAGGGAGTTAACGGAGAGTGTGACGTCGGTGGAAGAGAAGGCTTAACG 433 |||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||| Sbjct 361 GAAAAGAAGAAAAAGAGAGTTAACGGAGAAAGTGACGGCGGTGGAAGAGAAGGATTAACG 420 Query 434 GTGTTGACGAGAGC-AAGAGGTGGAGATAGGTCGTTGAGGATGGGGTTACAAGAAGTGAA 492 ||||| |||||||| || ||||||||| | ||||||||||||||||||| |||||||||| Sbjct 421 GTGTTAACGAGAGCGAA-AGGTGGAGAGAAGTCGTTGAGGATGGGGTTAGAAGAAGTGAA 479 Query 493 AGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTC-GGAT---ATCT- 547 ||||||||||||||||||||||||||||||||||||||||||||||| || | |||| Sbjct 480 AGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCCGGGTCGGATCTC 539 Query 548 -GTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCACCCAT 606 ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 540 TGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGTGGCGGCAACTCACCCAT 599 Query 607 CGCCACCTGGCGTATCTCCAGTCC 630 |||||| ||||| ||||||||||| Sbjct 600 CGCCACTTGGCGCATCTCCAGTCC 623 Score = 137 bits (74), Expect = 2e-31 Identities = 82/86 (95%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 632 GGTGATGATCCAAAGGAGGTCAAGGCGAGGTTGAAAGTGTGGGCACAAGCGGTAGCTTTA 691 |||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||| Sbjct 655 GGTGATGATCCAAAGGAGGTTAAGGCGAGGCTGAAGGTGTGGGCACAAGCAGTAGCTTTA 714 Query 692 GCTTCTGCGACACGTCAAGCTTCTTA 717 |||||||||||||||||||||||||| Sbjct 715 GCTTCTGCGACACGTCAAGCTTCTTA 740 > Ahg483864 jgi|Araly1|483864|fgenesh2_kg.4__2924__AT2G46940.1 Length=715 Score = 99.0 bits (53), Expect = 8e-20 Identities = 330/452 (73%), Gaps = 65/452 (14%) Strand=Plus/Plus Query 223 AGAGTCAGATTCCGACAAAGAGACACGT--GGGTTTTACTCTCTTCCGGTGACTC-CATC 279 ||| || |||||||| ||||| | | | || || |||||||| ||| || || |||| Sbjct 285 AGAATCGGATTCCGATAAAGA-A-TCTTCCGGATTCTACTCTCTCCCGACGA-TCACATC 341 Query 280 TCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTT-AG--ATGCG-AATGAGAGT-A-A 333 |||||||||||||||||| ||||||||||||| ||| || | | | || |||||| | | Sbjct 342 TCGCCGGAGAAGAAAACTCACAGTTTCCGGCG-GTTCAGAAACGAGCAAAGAGAGTGAGA 400 Query 334 C-AAAA---ATGGCAGTAAGTGTAGTTTACGGA-GGCA--AA-GG---A-GGGAAAAGAA 381 | |||| |||| |||||||||||| ||||| || | || || | | ||||| Sbjct 401 CGAAAATCGATGGAAGTAAGTGTAGTCAACGGAGGGTATTAACGGAAAATAGTAAAAGGG 460 Query 382 G-AA--A--AAGG-GA---G-TTAAC-G-G-AGAGTGTGAC-GT--CGGTGGAAGAGAAG 425 | || | | || | | ||||| | | ||| | ||| || ||| ||| ||| | Sbjct 461 GTAATCAGCACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAG-A- 518 Query 426 GCTTAACGGTGTTGACG-AGAGCAAGAGG-TGG-AGATAGGTCGTTGAGGATGGGGTTAC 482 | || |||||||| ||| || | ||||| || ||| | ||| ||| ||||||||| Sbjct 519 G-TTGACGGTGTTAACGAAG-GTGAGAGGAGGGAAGA-A-GTCAATGAAGATGGGGTTTG 574 Query 483 AAGAAGTGAAAGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCGGA 542 |||||||||||||||||||||||||||| |||||| | || ||||||| || |||| Sbjct 575 AAGAAGTGAAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTC-GGGT---- 629 Query 543 TATCTGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCAC 602 | || | || | ||||||| || ||| | ||||||||| |||||| |||| | Sbjct 630 T-TCAATATC--CG-CCGGGTCAAAC--CGAGA----GACTAGTAGTGGCGGCAACTCTC 679 Query 603 CCATCGCCACCTGGCGTATCTCCAGTCCTGGT 634 |||| |||| |||||||||||| ||||||||| Sbjct 680 CCATTGCCAACTGGCGTATCTCAAGTCCTGGT 711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48225490005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5