BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62070.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349267 jgi|Araly1|349267|fgenesh1_pg.C_scaffold_5002659 830 0.0
Ahg483864 jgi|Araly1|483864|fgenesh2_kg.4__2924__AT2G46940.1 99.0 8e-20
> Ahg349267 jgi|Araly1|349267|fgenesh1_pg.C_scaffold_5002659
Length=741
Score = 830 bits (449), Expect = 0.0
Identities = 570/624 (91%), Gaps = 26/624 (4%)
Strand=Plus/Plus
Query 32 ATGGCGTTCGAAGAGAGCTTAGTAATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACG 91
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTTGGACGAGAGCTTAGTGATGGTTTCTTCTTTGTCGAGATTGTCTATATGTACG 60
Query 92 AGCTCTGC-T---T-A-C---GACGAAGCAGCCACGAAGAATCAACCAGATTCGTGTGTT 142
|||||||| | | | | ||||||||||||||||||||||| | |||||||||||||
Sbjct 61 AGCTCTGCTTACGTCACCGAAGACGAAGCAGCCACGAAGAATCATCTAGATTCGTGTGTT 120
Query 143 TCCACATCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGGGAAGTTTCCGATGATGGA 202
| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TTCACGTCTCTGGAGAATTTCGACGGAGCAGAGGCGGATGGAGAAGTTTCCGATGATGGA 180
Query 203 GAAGGAAAAGAGAACGTTCGAGAGTCAGATTCCGACAAAGAGACACGTGGGTTTTACTCT 262
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAAGGAAAAGAGAACGTTCGAGAGTCTGATTCCGACAAAGAGACACGTGGGTTTTACTCT 240
Query 263 CTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTTAGATGCG 322
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CTTCCGGTGACTCCATCTCGCCGGAGAAGAAAACTTACAGTTTCAGGCGAGTTAGATGCG 300
Query 323 AATGAGAGTAACAAAAATGGCAGTAAGTGTAGTTTACGGAGGCAAA---GG--AG---GG 374
||||||||||||| | | ||| |||||||||||||||||||||||| || || ||
Sbjct 301 AATGAGAGTAACAGAGACGGCGGTAAGTGTAGTTTACGGAGGCAAAAAAGGTTAGTAAGG 360
Query 375 -AAAAGAAGAAAAAGGGAGTTAACGGAGAGTGTGACGTCGGTGGAAGAGAAGGCTTAACG 433
|||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||
Sbjct 361 GAAAAGAAGAAAAAGAGAGTTAACGGAGAAAGTGACGGCGGTGGAAGAGAAGGATTAACG 420
Query 434 GTGTTGACGAGAGC-AAGAGGTGGAGATAGGTCGTTGAGGATGGGGTTACAAGAAGTGAA 492
||||| |||||||| || ||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 421 GTGTTAACGAGAGCGAA-AGGTGGAGAGAAGTCGTTGAGGATGGGGTTAGAAGAAGTGAA 479
Query 493 AGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTC-GGAT---ATCT- 547
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 480 AGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCCGGGTCGGATCTC 539
Query 548 -GTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCACCCAT 606
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 540 TGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGTGGCGGCAACTCACCCAT 599
Query 607 CGCCACCTGGCGTATCTCCAGTCC 630
|||||| ||||| |||||||||||
Sbjct 600 CGCCACTTGGCGCATCTCCAGTCC 623
Score = 137 bits (74), Expect = 2e-31
Identities = 82/86 (95%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 632 GGTGATGATCCAAAGGAGGTCAAGGCGAGGTTGAAAGTGTGGGCACAAGCGGTAGCTTTA 691
|||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||
Sbjct 655 GGTGATGATCCAAAGGAGGTTAAGGCGAGGCTGAAGGTGTGGGCACAAGCAGTAGCTTTA 714
Query 692 GCTTCTGCGACACGTCAAGCTTCTTA 717
||||||||||||||||||||||||||
Sbjct 715 GCTTCTGCGACACGTCAAGCTTCTTA 740
> Ahg483864 jgi|Araly1|483864|fgenesh2_kg.4__2924__AT2G46940.1
Length=715
Score = 99.0 bits (53), Expect = 8e-20
Identities = 330/452 (73%), Gaps = 65/452 (14%)
Strand=Plus/Plus
Query 223 AGAGTCAGATTCCGACAAAGAGACACGT--GGGTTTTACTCTCTTCCGGTGACTC-CATC 279
||| || |||||||| ||||| | | | || || |||||||| ||| || || ||||
Sbjct 285 AGAATCGGATTCCGATAAAGA-A-TCTTCCGGATTCTACTCTCTCCCGACGA-TCACATC 341
Query 280 TCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTT-AG--ATGCG-AATGAGAGT-A-A 333
|||||||||||||||||| ||||||||||||| ||| || | | | || |||||| | |
Sbjct 342 TCGCCGGAGAAGAAAACTCACAGTTTCCGGCG-GTTCAGAAACGAGCAAAGAGAGTGAGA 400
Query 334 C-AAAA---ATGGCAGTAAGTGTAGTTTACGGA-GGCA--AA-GG---A-GGGAAAAGAA 381
| |||| |||| |||||||||||| ||||| || | || || | | |||||
Sbjct 401 CGAAAATCGATGGAAGTAAGTGTAGTCAACGGAGGGTATTAACGGAAAATAGTAAAAGGG 460
Query 382 G-AA--A--AAGG-GA---G-TTAAC-G-G-AGAGTGTGAC-GT--CGGTGGAAGAGAAG 425
| || | | || | | ||||| | | ||| | ||| || ||| ||| ||| |
Sbjct 461 GTAATCAGCACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAG-A- 518
Query 426 GCTTAACGGTGTTGACG-AGAGCAAGAGG-TGG-AGATAGGTCGTTGAGGATGGGGTTAC 482
| || |||||||| ||| || | ||||| || ||| | ||| ||| |||||||||
Sbjct 519 G-TTGACGGTGTTAACGAAG-GTGAGAGGAGGGAAGA-A-GTCAATGAAGATGGGGTTTG 574
Query 483 AAGAAGTGAAAGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCGGA 542
|||||||||||||||||||||||||||| |||||| | || ||||||| || ||||
Sbjct 575 AAGAAGTGAAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTC-GGGT---- 629
Query 543 TATCTGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCAC 602
| || | || | ||||||| || ||| | ||||||||| |||||| |||| |
Sbjct 630 T-TCAATATC--CG-CCGGGTCAAAC--CGAGA----GACTAGTAGTGGCGGCAACTCTC 679
Query 603 CCATCGCCACCTGGCGTATCTCCAGTCCTGGT 634
|||| |||| |||||||||||| |||||||||
Sbjct 680 CCATTGCCAACTGGCGTATCTCAAGTCCTGGT 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5