BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62100.1 Length=731 Score E Sequences producing significant alignments: (Bits) Value Ahg486723 jgi|Araly1|486723|fgenesh2_kg.5__2715__AT3G62100.1 1116 0.0 Ahg346509 jgi|Araly1|346509|fgenesh1_pg.C_scaffold_4002851 424 6e-118 Ahg897836 jgi|Araly1|897836|Al_scaffold_0005_1802 291 7e-78 > Ahg486723 jgi|Araly1|486723|fgenesh2_kg.5__2715__AT3G62100.1 Length=732 Score = 1116 bits (604), Expect = 0.0 Identities = 698/740 (94%), Gaps = 19/740 (3%) Strand=Plus/Plus Query 1 ataaaatcatagagagagaga-aatagtaaaagaaataaaaaaaaaTGGGAAGAGGGAGA 59 ||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||| Sbjct 1 ATAAAATCATAGAGAGAGAGAGAATAGT---A-AAAT--AAAAAAATGGGAAGAGGGAGA 54 Query 60 AGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTGTCTTCG 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 55 AGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTCTCTTCG 114 Query 120 AGTAATACTCGGAACCTAAGCACGGACCTGAGACTCGGGCTCAGCTTCGGATCATCTTCC 179 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 115 AGTAATACTCGGAACCTAAGCACGGACCTAAGGCTCGGGCTCAGCTTCGGATCATCTTCC 174 Query 180 GGACAATATTACAACGGTGGAGATAACCATGAATATGATGGAGTCGGTGCGGCAGAGGAA 239 |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 175 GGACAATACTACAACGGTGGAGAAAACCATGAGTATGATGGAGTCGGTGCGGCAGAGGAA 234 Query 240 ATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 299 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 235 ATGATGATCATGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 294 Query 300 AAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATCGATCTTTTATCTCTTAATGGA 359 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 295 AAAGTGAACATGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGA 354 Query 360 TATCATGATTTGATCACAACTCTCGACTACATGTTCAATGCTTCAATCCTTTGGGCTGAA 419 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 355 TATCATGATTTGATCACAACTCTTGACTACATGTTCAATGCCTCAATCCTTTGGGCTGAA 414 Query 420 GAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGAC 479 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 GAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGAC 474 Query 480 TGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAG 539 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 475 TGGATGATGGTTGGAGATGTTCCATGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAG 534 Query 540 ATCTCAAGAGCTTATCACTACTGA-T-TTTCT--AAAA-GCAAACTTGGAAGAATCTAGG 594 |||||||||||||||||||||||| | ||| | |||| ||| | ||||||| |||||| Sbjct 535 ATCTCAAGAGCTTATCACTACTGAATGTTTTTTTAAAAAGCAGAGGTGGAAGACTCTAGG 594 Query 595 ATTGACCAATACAGTCAGTGGTGGTGGGGGAAAAAGTTAGTTTTGTCTGAATGTAAATCA 654 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 595 ATTGACCAATACAGTCAGTGGTGGAAAA--AAAAAGTTAGTTTTGTCTGAATGTAAATCA 652 Query 655 CTTGTTCGAGATTTT-ATTCAAATTTTGTTTCTAGTTT--T--ATTACATTTATaaaaaa 709 ||||||||||||||| |||||||||||||||||||||| | ||||| ||||||| ||| Sbjct 653 CTTGTTCGAGATTTTTATTCAAATTTTGTTTCTAGTTTAATTTATTACTTTTATAACAAA 712 Query 710 aTCGGTTGTAACTTGTAATG 729 |||||||||||||||||||| Sbjct 713 ATCGGTTGTAACTTGTAATG 732 > Ahg346509 jgi|Araly1|346509|fgenesh1_pg.C_scaffold_4002851 Length=504 Score = 424 bits (229), Expect = 6e-118 Identities = 435/529 (82%), Gaps = 35/529 (7%) Strand=Plus/Plus Query 45 ATGGGAAGAGGGAGAAGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCA 104 ||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||| Sbjct 1 ATGGGAAGAGGGAGAAGTTCATCGTCTTCGTCGATAGAGAGTAGCAGCAAGAGCAACCCA 60 Query 105 TTTGGT-GTGTCTTCGAGTAATACTCGGAACCTAAGCACGGACCTGAGACTCGGGCTCAG 163 || ||| || || || | | ||||||||||||||||||||||||||| ||||| ||||| Sbjct 61 TTCGGTGGT-TCATC-A--AGTACTCGGAACCTAAGCACGGACCTGAGGCTCGGACTCAG 116 Query 164 CTTC-GGATCATCTTC-CGGA--CAATATTACAACGGTGGAGATAACCATGAATATGATG 219 |||| ||| ||| || ||| ||||||| |||||| | | || | | | | || Sbjct 117 CTTCGGGA-AATCCTCAGGGACTCAATATTTTAACGGT-G-GTTATGGGT-ACTCCGTTG 172 Query 220 GAG-TCGGTGCGGCAGAGGAAATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAAT 278 || || | |||||||||| | | | | | ||||||||| ||||||||||| Sbjct 173 CAGCTCCG-GCGGCAGAGG--A-G--G---A--G--GAAGAAGAG---AACGAGTGTAAC 216 Query 279 AGTGTCGGAAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATC 338 ||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 217 AGTGTAGGGAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCAATTGGAAGAAAGATC 276 Query 339 GATCTTTTATCTCTTAATGGATATCATGATTTGATCACAACTCTCGACTACATGTTCAAT 398 ||||| | ||||||||||| || || || ||||||| ||| || || | ||||||||| Sbjct 277 GATCTAATGTCTCTTAATGGCTACCACGACTTGATCAGAACCCTAGATTTCATGTTCAAC 336 Query 399 GCTTCAATCCTTTGGGCTGAAGAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACG 458 || || || || ||||||||||||||||| ||||| | ||||||||||| ||||||||| Sbjct 337 GCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAACGAGAAGAGTCATGTGCTAACG 396 Query 459 TACGCAGACAAAGAAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTG 518 |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 397 TACGCAGATAAGGAAGGTGACTGGATGATGGTTGGGGATGTTCCTTGGGAGATGTTCTTG 456 Query 519 TCTAGC-GTGAGAAGACTAAAGATCTCAAGAGCTTAT--C-ACTACTGA 563 |||| | ||||||||||| ||||| ||||||||| || | |||||||| Sbjct 457 TCTA-CTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACTGA 504 > Ahg897836 jgi|Araly1|897836|Al_scaffold_0005_1802 Length=339 Score = 291 bits (157), Expect = 7e-78 Identities = 167/172 (97%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 240 ATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 299 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGATCATGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 60 Query 300 AAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATCGATCTTTTATCTCTTAATGGA 359 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 AAAGTGAACATGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGA 120 Query 360 TATCATGATTTGATCACAACTCTCGACTACATGTTCAATGCTTCAATCCTTT 411 || |||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 121 TACCATGATTTGATCACAACTCTTGACTACATGTTCAATGCCTCAATCCTTT 172 Score = 171 bits (92), Expect = 9e-42 Identities = 96/98 (98%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 412 GGGCTGAAGAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAG 471 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GGGCTGAAGAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAG 298 Query 472 AAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAG 509 ||||||||||||||||||||||||||||||| |||||| Sbjct 299 AAGGTGACTGGATGATGGTTGGAGATGTTCCATGGGAG 336 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26914779402 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5