BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62100.1
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486723 jgi|Araly1|486723|fgenesh2_kg.5__2715__AT3G62100.1 1116 0.0
Ahg346509 jgi|Araly1|346509|fgenesh1_pg.C_scaffold_4002851 424 6e-118
Ahg897836 jgi|Araly1|897836|Al_scaffold_0005_1802 291 7e-78
> Ahg486723 jgi|Araly1|486723|fgenesh2_kg.5__2715__AT3G62100.1
Length=732
Score = 1116 bits (604), Expect = 0.0
Identities = 698/740 (94%), Gaps = 19/740 (3%)
Strand=Plus/Plus
Query 1 ataaaatcatagagagagaga-aatagtaaaagaaataaaaaaaaaTGGGAAGAGGGAGA 59
||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||
Sbjct 1 ATAAAATCATAGAGAGAGAGAGAATAGT---A-AAAT--AAAAAAATGGGAAGAGGGAGA 54
Query 60 AGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTGTCTTCG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 55 AGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTCTCTTCG 114
Query 120 AGTAATACTCGGAACCTAAGCACGGACCTGAGACTCGGGCTCAGCTTCGGATCATCTTCC 179
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 115 AGTAATACTCGGAACCTAAGCACGGACCTAAGGCTCGGGCTCAGCTTCGGATCATCTTCC 174
Query 180 GGACAATATTACAACGGTGGAGATAACCATGAATATGATGGAGTCGGTGCGGCAGAGGAA 239
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 175 GGACAATACTACAACGGTGGAGAAAACCATGAGTATGATGGAGTCGGTGCGGCAGAGGAA 234
Query 240 ATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 ATGATGATCATGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 294
Query 300 AAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATCGATCTTTTATCTCTTAATGGA 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 AAAGTGAACATGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGA 354
Query 360 TATCATGATTTGATCACAACTCTCGACTACATGTTCAATGCTTCAATCCTTTGGGCTGAA 419
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 355 TATCATGATTTGATCACAACTCTTGACTACATGTTCAATGCCTCAATCCTTTGGGCTGAA 414
Query 420 GAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGAC 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGAC 474
Query 480 TGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAG 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 TGGATGATGGTTGGAGATGTTCCATGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAG 534
Query 540 ATCTCAAGAGCTTATCACTACTGA-T-TTTCT--AAAA-GCAAACTTGGAAGAATCTAGG 594
|||||||||||||||||||||||| | ||| | |||| ||| | ||||||| ||||||
Sbjct 535 ATCTCAAGAGCTTATCACTACTGAATGTTTTTTTAAAAAGCAGAGGTGGAAGACTCTAGG 594
Query 595 ATTGACCAATACAGTCAGTGGTGGTGGGGGAAAAAGTTAGTTTTGTCTGAATGTAAATCA 654
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 595 ATTGACCAATACAGTCAGTGGTGGAAAA--AAAAAGTTAGTTTTGTCTGAATGTAAATCA 652
Query 655 CTTGTTCGAGATTTT-ATTCAAATTTTGTTTCTAGTTT--T--ATTACATTTATaaaaaa 709
||||||||||||||| |||||||||||||||||||||| | ||||| ||||||| |||
Sbjct 653 CTTGTTCGAGATTTTTATTCAAATTTTGTTTCTAGTTTAATTTATTACTTTTATAACAAA 712
Query 710 aTCGGTTGTAACTTGTAATG 729
||||||||||||||||||||
Sbjct 713 ATCGGTTGTAACTTGTAATG 732
> Ahg346509 jgi|Araly1|346509|fgenesh1_pg.C_scaffold_4002851
Length=504
Score = 424 bits (229), Expect = 6e-118
Identities = 435/529 (82%), Gaps = 35/529 (7%)
Strand=Plus/Plus
Query 45 ATGGGAAGAGGGAGAAGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCA 104
||||||||||||||||| ||||||||||| ||||||||||| ||| |||| |||||||||
Sbjct 1 ATGGGAAGAGGGAGAAGTTCATCGTCTTCGTCGATAGAGAGTAGCAGCAAGAGCAACCCA 60
Query 105 TTTGGT-GTGTCTTCGAGTAATACTCGGAACCTAAGCACGGACCTGAGACTCGGGCTCAG 163
|| ||| || || || | | ||||||||||||||||||||||||||| ||||| |||||
Sbjct 61 TTCGGTGGT-TCATC-A--AGTACTCGGAACCTAAGCACGGACCTGAGGCTCGGACTCAG 116
Query 164 CTTC-GGATCATCTTC-CGGA--CAATATTACAACGGTGGAGATAACCATGAATATGATG 219
|||| ||| ||| || ||| ||||||| |||||| | | || | | | | ||
Sbjct 117 CTTCGGGA-AATCCTCAGGGACTCAATATTTTAACGGT-G-GTTATGGGT-ACTCCGTTG 172
Query 220 GAG-TCGGTGCGGCAGAGGAAATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAAT 278
|| || | |||||||||| | | | | | ||||||||| |||||||||||
Sbjct 173 CAGCTCCG-GCGGCAGAGG--A-G--G---A--G--GAAGAAGAG---AACGAGTGTAAC 216
Query 279 AGTGTCGGAAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATC 338
||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 217 AGTGTAGGGAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCAATTGGAAGAAAGATC 276
Query 339 GATCTTTTATCTCTTAATGGATATCATGATTTGATCACAACTCTCGACTACATGTTCAAT 398
||||| | ||||||||||| || || || ||||||| ||| || || | |||||||||
Sbjct 277 GATCTAATGTCTCTTAATGGCTACCACGACTTGATCAGAACCCTAGATTTCATGTTCAAC 336
Query 399 GCTTCAATCCTTTGGGCTGAAGAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACG 458
|| || || || ||||||||||||||||| ||||| | ||||||||||| |||||||||
Sbjct 337 GCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAACGAGAAGAGTCATGTGCTAACG 396
Query 459 TACGCAGACAAAGAAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTG 518
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 397 TACGCAGATAAGGAAGGTGACTGGATGATGGTTGGGGATGTTCCTTGGGAGATGTTCTTG 456
Query 519 TCTAGC-GTGAGAAGACTAAAGATCTCAAGAGCTTAT--C-ACTACTGA 563
|||| | ||||||||||| ||||| ||||||||| || | ||||||||
Sbjct 457 TCTA-CTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACTGA 504
> Ahg897836 jgi|Araly1|897836|Al_scaffold_0005_1802
Length=339
Score = 291 bits (157), Expect = 7e-78
Identities = 167/172 (97%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 240 ATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGATCATGGAAGAAGAAGATCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTG 60
Query 300 AAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATCGATCTTTTATCTCTTAATGGA 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAAGTGAACATGGAAGGAGTTCCTATTGGAAGAAAGATCGATCTTTTATCTCTTAATGGA 120
Query 360 TATCATGATTTGATCACAACTCTCGACTACATGTTCAATGCTTCAATCCTTT 411
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 121 TACCATGATTTGATCACAACTCTTGACTACATGTTCAATGCCTCAATCCTTT 172
Score = 171 bits (92), Expect = 9e-42
Identities = 96/98 (98%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 412 GGGCTGAAGAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAG 471
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGGCTGAAGAAGAAGAGATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAG 298
Query 472 AAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAG 509
||||||||||||||||||||||||||||||| ||||||
Sbjct 299 AAGGTGACTGGATGATGGTTGGAGATGTTCCATGGGAG 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26914779402
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5