BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62120.1
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899203 jgi|Araly1|899203|Al_scaffold_0005_3169 2638 0.0
Ahg323549 jgi|Araly1|323549|fgenesh1_pm.C_scaffold_5001093 902 0.0
> Ahg899203 jgi|Araly1|899203|Al_scaffold_0005_3169
Length=1569
Score = 2638 bits (1428), Expect = 0.0
Identities = 1513/1555 (97%), Gaps = 2/1555 (0%)
Strand=Plus/Plus
Query 188 gaaaagaaagaaaaggttaagaaagaaaaggttgtgaaagaaaaggttgcaaaggCTTCT 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GAAAAGAAAGAAAAGGTTAAGAAAGAAAAGGTTGTGAAAGAAAAGGTTGCAAAGGCTTCT 75
Query 248 TCGAGTGGACAGAAGAAGAAGGACGTCAAGAAGGAAACGGGTCTCGGACTCAGTGTTAAG 307
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 76 TCTAGTGGACAGAAGAAGAAGGACGTCAAGAAGGAAACGGGTCTTGGACTCAGCGTTAAG 135
Query 308 AAAGATGAGAACTTCGGGGAATGGTATTCTGAGGTTTGTAAACAAGATATGATTGAGTAC 367
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 136 AAAGATGAGAATTTCGGGGACTGGTATTCTGAGGTTTGTAAACAAGATATGATTGAGTAC 195
Query 368 TACGATATCTCTGGATGTTATATTC-TACGGCCATGGTCAATGGCCATTTGGGAGATTAT 426
|| |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 196 TATGATATCTCTGGATGTTATATTCTTA-GGCCATGGTCCATGGCCATTTGGGAGATTAT 254
Query 427 GCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTCAAGAATTGCTATTTCCCTCT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTCAAGAATTGCTATTTCCCTCT 314
Query 487 GTTTGTATCTCCTGGTGTCTTAGAAAAGGAGAAGGACCACATCGAGGGATTCGCCCCTGA 546
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 315 GTTTGTATCTCCTGCTGTCTTAGAGAAGGAGAAGGACCACATTGAGGGATTCGCCCCAGA 374
Query 547 GGTTGCGTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAGTCCCAATTGCTATTCGTCC 606
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 375 GGTTGCTTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAATCCCAATTGCTATTCGTCC 434
Query 607 AACCAGTGAGACAGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCACCGTGACTT 666
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AACCAGTGAGACTGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCACCGTGACTT 494
Query 667 GCCTTTGAAGCTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCC 726
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GCCTTTGAAACTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCC 554
Query 727 ATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGGTCACACTGCATTCGCCACAAAAGC 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 555 ATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGGTCACACTGCATTCGCCACGAAAGC 614
Query 787 AGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATA 674
Query 847 TCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTGGACT 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 675 TCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGGGGACT 734
Query 907 TTACACTACAAGTGTAGAGGCTTTCATTCCAAACACTGGTCGTGGTGTACAAGGTGCAAC 966
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 735 TTACACTACAAGTGTAGAGGCCTTCATTCCAAACACTGGTCGTGGTGTACAAGGTGCAAC 794
Query 967 CTCTCATTGTTTGGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAA 1026
|||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 795 CTCTCACTGTTTGGGTCAAAACTTTGCGAAGATGTTTGAGATCAACTATGAGAATGAAAA 854
Query 1027 AGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGATTGGAGT 1086
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 AGCAGAGACAGCAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGATTGGAGT 914
Query 1087 GATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGT 974
Query 1147 GCAAGTTGTTGTGATTCCTGTTCCCTACAAAGATGCTAATACCCAAGGAATTTATGATGC 1206
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 975 GCAAGTTGTTGTGATCCCTGTACCCTACAAAGATGCTAATACCCAAGGAATTTATGATGC 1034
Query 1207 TTGTACTGCTACTGCATCTGCCTTGTGTGAAGCCGGTATCCGTGCTGAAGAAGATTTAAG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TTGTACTGCTACTGCATCTGCCTTGTGTGAAGCCGGTATCCGTGCTGAAGAAGATTTAAG 1094
Query 1267 GGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAG 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 GGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAG 1154
Query 1327 GATTGAGATTGGTCCCAGAGACCTAGAAAATGATCAGGTCAGAACTGTGAGACGTGACAA 1386
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1155 GATTGAGATTGGTCCCAGAGACCTGGAAAATGATCAGGTCAGAACTGTGAGACGTGACAA 1214
Query 1387 CGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTCGAACATGTTAAGGAACTGCTTGA 1446
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1215 CGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTCGAAAATGTTAAGGAACTGCTTGA 1274
Query 1447 AAAGATCCAGCAAAACATGTATGAAGTTGCTAAGCAAAAGAGGGAAGCATGTGTTCAAGA 1506
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1275 GAAGATCCAGCAAAACATGTATGAAGTTGCGAAGCAAAAGAGGGAAGCATGTGTTCAAGA 1334
Query 1507 GGTAAAGACTTGGGATGAGTTTATCAAAGCTCTTAACGAAAAGAAACTCATTTTGGCTCC 1566
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1335 GGTAAAGACTTGGGATGAGTTTATCAAAGCACTTAACGAAAAGAAACTCATCTTAGCTCC 1394
Query 1567 CTGGTGTGATGAAGAGGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGG 1626
||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct 1395 CTGGTGTGATGAAGAGGGAGTGGAGAGAGATGTGAAGGCACGTACTAAAGGTGAAACTGG 1454
Query 1627 AGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCTGAACTCCCTGAAGGCACTCTCTG 1686
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1455 AGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCAGAACTCCCTGAAGGCACTCTCTG 1514
Query 1687 CTTTGCTTCAGGAAAACCTGCAAAGAAATGGACCTATTGGGGCAGGAGTTACTAA 1741
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1515 CTTTGCTTCAGGAAAGCCTGCCAAGAAATGGACCTATTGGGGCAGGAGTTACTAA 1569
> Ahg323549 jgi|Araly1|323549|fgenesh1_pm.C_scaffold_5001093
Length=1491
Score = 902 bits (488), Expect = 0.0
Identities = 614/674 (91%), Gaps = 11/674 (2%)
Strand=Plus/Plus
Query 703 ATGGGAGTTCAGCAACCCTACCCCATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGG 762
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 ATGGGAGTGCAACAACCCTACCCCATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGG 452
Query 763 TCACACTGCATTCGCCACAAAAGCAGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCT 822
|||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 453 TCACTTTGCATTCGCCACGAAAGCAGAAGCAGATGAAGAGCTCCTCCAAATTTTGGAGCT 512
Query 823 TTACCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATG-AAGAGTG 881
|| |||||||||||||||||||| ||||||||| ||||||||||| ||| || || ||||
Sbjct 513 TTTCCGTCGCATATATGAAGAATTTCTTGCAGTCCCAGTTGTGAAGGGT-TGGAAAAGTG 571
Query 882 AAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGGCTTTCATTCCAAACA 941
|| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 572 AACATGAGAAATTTGCTGGGGGACTTTACACTACAAGTGTAGAGATTTTCATTCCAAACA 631
Query 942 CTGGTCGTGGTGTACAAGGTGCAACCTCTCA-TTGTTTGGGACAAAACTTTGCGAAGATG 1000
||||||||||||||||||| |||||||| || ||||||||| || |||||||| |||| |
Sbjct 632 CTGGTCGTGGTGTACAAGGGGCAACCTC-CAATTGTTTGGGTCAGAACTTTGCAAAGACG 690
Query 1001 TTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGG 1060
| ||||||||||| || | ||||||||| |||||||| || |||||||||||||||||||
Sbjct 691 TATGAGATCAACTATGTGGATGAGAAAGGAGAGACAGCAACGGTGTGGCAGAATTCTTGG 750
Query 1061 GCCTACAGTACCAGGACGATTGGAGTGATGATTATGACTC-ATGGAGATGACAAAGGCCT 1119
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
Sbjct 751 ACCTACAGTACCAGGACGATTGGAGTGATGATTATGA-TCCATGGAGATGACAAGGGCTT 809
Query 1120 GGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTC-CTGTTCCCTACAAAG 1178
| ||||||| |||||||||||| || ||||||||||||| || | |||| |||| ||||
Sbjct 810 GATACTCCCCCCTAAAGTCGCACCTCTGCAAGTTGTTGTAAT-CGCTGTGCCCTGCAAAA 868
Query 1179 ATGCTAATACCCAAGGAATTTATGATGCTTGTACTGCTACTGCATCTGCCTTGTGTGAAG 1238
||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 869 ATGCTAATATCCAAAGAATTTATGATGCTTGTACTGCTACAGTATCTGCCTTGTGTGAAG 928
Query 1239 CCGGTATCCGTGCTGAAGAAGATTTAAGGGAC-AACTACTCTCCTGGATGGAAGTATTCA 1297
||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 929 CCGGTATCCGTGCTGAAGAAGATTTAAGGGATGAA-TACACTCCTGGATGGAAGTATTCA 987
Query 1298 GACTGGGAAATGAAGGGTGTTCCATTGAGGATTGAGATTGGTCCCAGAGACCTAGAAAAT 1357
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 988 GACTGGGAAATGAAGGGCGTTCCATTGAGGATTGAAATTGGTCCCAGAGACCTGGAAAAT 1047
Query 1358 GATCAGGTCA-GAA 1370
|||||||||| |||
Sbjct 1048 GATCAGGTCATGAA 1061
Score = 582 bits (315), Expect = 3e-165
Identities = 358/379 (94%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 1364 GTCAGAACTGTGAGACGTGACAACGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTC 1423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GTCAGAACTGTGAGACGTGACAACGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTT 1173
Query 1424 GAACATGTTAAGGAACTGCTTGAAAAGATCCAGCAAAACATGTATGAAGTTGCTAAGCAA 1483
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1174 GAAAATGTTAAGGAACTGCTTGAGAAGATCCAGCAAAACATGTATGAAGTTGCGAAGCAA 1233
Query 1484 AAGAGGGAAGCATGTGTTCAAGAGGTAAAGACTTGGGATGAGTTTATCAAAGCTCTTAAC 1543
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1234 AAGAGGGAAGCGTGTGTTCAAGAGGTAAAGACTTGGGATGAGTTTATCAAATCTTTTAAC 1293
Query 1544 GAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAGGAAGTGGAAAGAGATGTTA-A 1602
||||||||| |||| || ||||||||||||||||||| ||||||||| |||||||| | |
Sbjct 1294 GAAAAGAAATTCATCTTAGCTCCCTGGTGTGATGAAGTGGAAGTGGAGAGAGATGT-ACA 1352
Query 1603 GGCACGTACGAAAGGTGAAACAGGAGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCC 1662
||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1353 GGCACGTACTAAAGGTGAAACTGGAGCAGCTAAAACCCTTTGTTCTCCACTGGATCAGCC 1412
Query 1663 TGAACTCCCTGAAGGCACTCTCTGCTTTGCTTCAGGAAAACCTGCAAAGAAATGGACCTA 1722
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1413 AGAACTCCCTGAAGGCACTCTCTGCTTTGCTTCAGGAAAGCCTGCCAAGAAATGGACCTA 1472
Query 1723 TTGGGGCAGGAGTTACTAA 1741
|||||||||||||||||||
Sbjct 1473 TTGGGGCAGGAGTTACTAA 1491
Score = 412 bits (223), Expect = 4e-114
Identities = 323/371 (87%), Gaps = 7/371 (2%)
Strand=Plus/Plus
Query 304 TAAGAAAGATGAGAACTTCGGGGAA-TGGTATTCTGAGGTTTGTAAACAAGATATGATTG 362
||||||| ||||||| ||| | || ||||||| |||||||||||||| ||| |||||||
Sbjct 24 TAAGAAAAATGAGAATTTC-AGCAAGTGGTATTTTGAGGTTTGTAAACGAGACATGATTG 82
Query 363 AGTACTACGATATCTCTGGATGTTATATT-CTACGGCCATGGTCAATGGCCATTTGGGAG 421
|||||| | ||||||||||||||||| || ||| |||||| | | |||||||||||||||
Sbjct 83 AGTACTTCAATATCTCTGGATGTTATTTTCCTA-GGCCATTGACCATGGCCATTTGGGAG 141
Query 422 ATTATGCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTC---AAGAATTGCTAT 478
|| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 142 ATAATGCAAATTTTCTTTGATGCGGAAATGAAGAAAATGAAGGTCGTAAAGAATTGGGAT 201
Query 479 TTCCCTCTGTTTGTATCTCCTGGTGTCTTAGAAAAGGAGAAGGACCACATCGAGGGATTC 538
||||||||||||||| |||||||||||||||| ||||| || || || || || ||||||
Sbjct 202 TTCCCTCTGTTTGTACCTCCTGGTGTCTTAGAGAAGGAAAATGAACATATTGAAGGATTC 261
Query 539 GCCCCTGAGGTTGCGTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAGTCCCAATTGCT 598
|| || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 262 GCGCCAGAGGTTGGGTGGGTTACAAAGTCAATTAAATCTGACTTGGAAGTCCCAATTGCT 321
Query 599 ATTCGTCCAACCAGTGAGACAGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCAC 658
| ||||||||| |||||||| || ||||| |||||| ||||||||| ||| |||| ||
Sbjct 322 ACTCGTCCAACTAGTGAGACTGTTTTGTACACTTACTTTAGCAAGTGGGTAAAGGGGTAC 381
Query 659 CGTGACTTGCC 669
|||||||||||
Sbjct 382 CGTGACTTGCC 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72828548440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5