BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62130.1
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486720 jgi|Araly1|486720|fgenesh2_kg.5__2712__AT3G62130.1 2730 0.0
> Ahg486720 jgi|Araly1|486720|fgenesh2_kg.5__2712__AT3G62130.1
Length=1802
Score = 2730 bits (1478), Expect = 0.0
Identities = 1707/1813 (94%), Gaps = 33/1813 (2%)
Strand=Plus/Plus
Query 6 tctctctctcAATTTGGGATTCGAGACGAAACCCTAGCTCTGAtttttttCAATTCCGAT 65
|||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1 TCTCTCTCTCGATTTGGGATTCGAGACGAAACCCTAGCTCTGA-TTTTTT--ATTCCGAT 57
Query 66 GGAGGCGGGAGAGCGGCGCAATGGCGATTCGATGAGTCACAATCACCGCGCACCGAAGAA 125
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GGAGTCGGGCGAGCGGCGCAATGGCGATTCGATGAGTCACAATCACCGCGCACCGAAGAA 117
Query 126 GCCACGTCTCGCTGGGTTATTAACCGAGTCAGATATCGACTCTGAGTTCGCTCACCACCA 185
|||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 118 GCCACGCCTCGTTGGGTTATTATCCGAGTCAGATATCGACTCCGAGTTCGCTCACCACCA 177
Query 186 GACCGGTGTTGCCAGAATCAACAACGGTAGCTTCGGGTGCTGTCCTGGCTCCGTTCTCGA 245
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 178 GACCGGTGTTGCCAGAATCAACAACGGTAGCTTCGGCTGCTGTCCTGGTTCCGTTCTCGA 237
Query 246 GGCGCAACGCGAGTGGCAGCTTCGTTATCTCCGTCAGCCTGATGAGTTCTACTTCAACGG 305
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGCGCAGCGTGAGTGGCAGCTTCGTTATCTCCGTCAGCCTGATGAGTTCTACTTCAACGG 297
Query 306 TCTCCGTCGTGGACTTCTCGCTTCTCGAACTGTGATCAGTGACCTAATCAACGCCGATGA 365
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCGCCGTCGTGGACTTCTCGCTTCTCGAACTGTGATCAGTGACCTAATCAACGCCGATGA 357
Query 366 TGTTGATGAGGTCTCTCTCGTTGATAACGCCACCACTGCTGCTGCTATTGTTCTTCAGAA 425
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 358 TGTTGACGAGGTCTCGCTCGTTGATAACGCAACCACTGCTGCTGCTATTGTTCTTCAGAA 417
Query 426 AGTTGGAAGGTGTTTCTCGGAAGGGAAGTATAAGAAGGAAGATACTGTAGTGATGTTTCA 485
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGTTGGAAGGTGTTTCTCTGAAGGGAAGTATAAGAAGGAAGATACTGTAGTGATGTTTCA 477
Query 486 CTGTGCGTTTCAGAGTGTGAAGAAGTCGATTCAGGCTTATGTCTCTCGTGTGGGAGGTTC 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTGTGCGTTTCAGAGTGTGAAGAAGTCGATTCAGGCTTATGTCTCTCGTGTGGGAGGTTC 537
Query 546 TACTGTTGAGGTTAGGTTACCTTTCCCTGTAAATTCGAACGAAGAGATTATCTCCAAGTT 605
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 538 TACTGTTGAGGTTAGGTTACCTTTCCCTGTTAATTCGAACGAAGAGATTATCTCCAAGTT 597
Query 606 TAGAGAAGGACTAGAGAAAGGTAGAGCGAATGGTAGAACGGTTAGGTTAGCTATCATTGA 665
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 TAGAGAAGGATTAGAGAAAGGTAGAGCCAATGGTAGAACGGTTAGGTTAGCTATCATTGA 657
Query 666 TCATATAACGTCGATGCCGTGTGTTTTGATGCCGGTACGAGAATTGGTTAAGATCTGCAG 725
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 CCATATAACGTCGATGCCGTGTGTTTTGATGCCGGTACGAGAATTGGTTAAAATCTGCAG 717
Query 726 AGAGGAAGGTGTGGAGCAGGTTTTTGTTGATGCAGCTCATGCCATTGGTAGTGTTAAAGT 785
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGAAGAAGGTGTGGAGCAGGTTTTTGTTGATGCAGCTCATGCCATTGGTAGTGTTAAAGT 777
Query 786 TGATGTGAAAGAAATCGGAGCTGATTACTATGTGAGTAATCTGCATAAATGGTTCTTTTG 845
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 778 TGATGTTAAAGAAATCGGAGCTGATTACTATGTGAGTAATCTACATAAATGGTTCTTTTG 837
Query 846 TCCACCGTCTATCGCGTTTTTCTATTGTAAGAAACGTGGTTCTGAGTCTGATGTTCATCA 905
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCCGCCATCTATCGCGTTTTTTTATTGTAAGAAACGTGGTTCTGAGTCTGATGTTCATCA 897
Query 906 CCCTGTGGTGTCTCATGAGTTTGGAAATGGTTTGCCTATAGAAAGTGCCTGGATTGGGAC 965
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 898 CCCTGTGGTGTCTCATGAGTTTGGAAATGGTTTGCCTACAGAGAGTGCCTGGATTGGGAC 957
Query 966 TAGGGATTACAGTTCACAGCTTGTGGTTCCATCTGTGATGGAGTTTGTAAACAGGTTCGA 1025
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 958 TAGGGATTACAGTTCGCAGCTTGTGGTTCCATCGGTAATGGAGTTTGTAAACAGGTTCGA 1017
Query 1026 GGGAGGGATGGAAGGGATAATGATGAAGAACCATGATGAAGCTGTTAGAATGGGTTTAAT 1085
||||||||| |||||||| ||||| | ||||||||||||||||||||||||||| |||||
Sbjct 1018 GGGAGGGATCGAAGGGATTATGATTAGGAACCATGATGAAGCTGTTAGAATGGGGTTAAT 1077
Query 1086 GCTGGCTGATGCTTGGGGAACGAATCTAGGGTCACCTCCAGAAATGTGTGTTGGGATGGT 1145
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1078 GCTGGCTGATGCTTGGGGAACGAATCTCGGGTCACCTCCTGAAATGTGTGTTGGGATGGT 1137
Query 1146 TATGATCGGTTTACCTTCAAAACTCTGTGTTGGAAGTGATGAAGATGCTATTAAGTTGCG 1205
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 1138 TATGATCGGTTTACCTTCAAAACTTTGTGTTGAAAGTGATGAAGATGCTACTAAGTTGCG 1197
Query 1206 GTCATATCTGCGGGTTCATTACTCAGTTGAGGTTCCAGTTT-TTTATCTCGGATTGAGGG 1264
||||||||||||||| |||||| |||| ||||||||||||| ||| ||||||||||||||
Sbjct 1198 GTCATATCTGCGGGTGCATTACGCAGTCGAGGTTCCAGTTTATTT-TCTCGGATTGAGGG 1256
Query 1265 ATGGAGAGGAAGGAGTGAAAGACAAAGACAGTGGACTAATTACTGCGTATGTTCGGATCT 1324
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1257 ATGGAGAGGAAGGAGTGAAAGACAAAGACAGTGGACTAATTACTGCCTATGTTCGGATCT 1316
Query 1325 CTCATCAGGTCTATAACAAAACTGAGGATTATGAGAGATTGAGAGACGCAATAACAGAGT 1384
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CTCATCAGATTTATAACAAAACTGAGGATTATGAGAGATTGAGAGACGCAATAACAGAGT 1376
Query 1385 TAGTCAAGGATCAGATGACTTGTCAAAACCTTCCTGCATTGTAGTAACCAGATATACTTT 1444
||||||||||||| ||||| ||||||||||||||| || |||||| ||||| ||||||||
Sbjct 1377 TAGTCAAGGATCAAATGACATGTCAAAACCTTCCTTCAGTGTAGTGACCAGGTATACTTT 1436
Query 1445 GATAATCCACAAGAGCCTCATTGAGACTCTTTCATAGATCAA-C---TGC--CGG-TGTA 1497
||||||||||||| |||||||| ||||||||||||||||||| | || ||| ||||
Sbjct 1437 GATAATCCACAAGGGCCTCATTCAGACTCTTTCATAGATCAAGCACATGTTTCGGGTGTA 1496
Query 1498 ACAATAAGGCGATGGAAGAGCCACGGGCAAAGATTCCGGAGGTAACATGTATTGATGAGC 1557
||||||||||| ||||||||||||| | ||||||||| ||| |||||| |||||||||||
Sbjct 1497 ACAATAAGGCGTTGGAAGAGCCACGAGAAAAGATTCCAGAGATAACATTTATTGATGAGC 1556
Query 1558 TTGTGGAGGAGCGGCTTGCAATGGAAGAAGAAGCTAACCTTGAGAGGCCCTCTCTTTTTA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1557 TTGTGGAGGAGCGGCTTGCAATGGAAGAAGAAGCTAACCTTGAGAGGCCCTTTCTTTT-A 1615
Query 1618 TTAGTCTTTTATAACGTTTAACGGCTTTGTATGAT--T-ATTGCAAATAAAATCATGTGC 1674
|||||||||| |||||||||||||||||||||||| | |||||||||||||| |||| |
Sbjct 1616 TTAGTCTTTT-TAACGTTTAACGGCTTTGTATGATGATTATTGCAAATAAAATGATGTTC 1674
Query 1675 GTCTAATCTTATCTTCCTCAAACATTCTGCTTGCGAATCTCCTGTCGCAGTTCCAATAAT 1734
|||||||| |||||||||||||||||||||| ||||| | |||||| |||||||||
Sbjct 1675 ATCTAATCT-ATCTTCCTCAAACATTCTGCTTTCGAAT-T---GTCGCAATTCCAATAAC 1729
Query 1735 TTTTCCTTATTGAAAACTTTTTCC---CTCACATTGA-AA-------GCATATTCATAGA 1783
|||||||||||||||||||||| |||||||||| || ||||||||||| |
Sbjct 1730 TTTTCCTTATTGAAAACTTTTTATTATCTCACATTGATAAACAATAAGCATATTCATACA 1789
Query 1784 TATGTAATGACAC 1796
|||||||||||||
Sbjct 1790 TATGTAATGACAC 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5