BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62140.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939293 jgi|Araly1|939293|scaffold_503484.1 1072 0.0
> Ahg939293 jgi|Araly1|939293|scaffold_503484.1
Length=685
Score = 1072 bits (580), Expect = 0.0
Identities = 651/686 (95%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 175 TTGTGGAGTAGAGGAAGAAGATGGTTGATGAGACAGAAAAACCTATTAGGTTACTCAATT 234
|||| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1 TTGTTGCGTAGAGGAAGAAGATGGCTGATGAGACAGAGAAACCTATTAGGTTACTCAATT 60
Query 235 TCGTCTCCGAGGAACAGTTAGATGAATCGAAGAAAGAAAGAGGAGAAAGAGTTGAAGATG 294
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TCGTCTCGGAGGAACAGTTAGATGAATCGAAGAAAGAAAGAGGTGAAAGAGTTGAAGATG 120
Query 295 GAACATTCCAGAGGGACAGGGCTCTCTACGAGATTTTGAAAGAGAACAAAGACAAGAAGG 354
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 GAACATTCCAGAGAGACAGGGCTCTCTACGAGATTTTGAAAGAGAACAAAGACAAGAAAG 180
Query 355 ACGCTGAGTTTAATGAACGATTCAAGCATAGGCCACCCAAAGCTCTGGATGAAGATGAGA 414
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ACGCTGAGTTTAATGAACGATTCAAGCATAGACCACCCAAAGCTCTGGATGAAGATGAGA 240
Query 415 CCGAGTTTCTTGATAAACTGGAAATGTCAAAGAGGGAATATGAACGTCAATTGGCAAATG 474
|||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 241 CCGAGTTTCTTGATAAGCTGGCAATGTCAAAGAGGGAATATGAACGACAATTGGCAAATG 300
Query 475 AAGAAGATGAACAGCTTCGTAATTTCCAGGCAGCGGTTGCAGCACGATCTGCAATCCTTC 534
|||| || ||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 301 AAGAGGAAGAACAGCTTCGTAGTTTCCAGGCAGCGGTTGCAGCACGATCAGCAATCCTTC 360
Query 535 ACGAACCAAAGGAAGCAGCAC-TGCCACCACCAGCGCCAGTCACCAAGGAACAAAAACCA 593
|||||||||||||||| |||| | ||||||||||| ||| ||||||||||||||||||||
Sbjct 361 ACGAACCAAAGGAAGCGGCACCT-CCACCACCAGCTCCAATCACCAAGGAACAAAAACCA 419
Query 594 ATCGGGAAGAGAAATCCTGCGACTCGTCCATTTAAAGCGATCATAAAAGTCAAGCCACAA 653
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCGGGAAGAGAAATACTGTGACTCGTCCATTTAAAGCGATCATAAAAGTCAAGCCACAA 479
Query 654 CCCAAGAAGGCTAAAGCAACAGAGAAAGAAGAGAAAGAGATCCCAGGGAATGGAAAACCG 713
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 CCGAAGAAGGCTAAAGCGACAGAGAAAGAAGAGAAAGAGATCCCGGGGAATGGAAAACCG 539
Query 714 GCCAGCCATATCGACCAGGCTTCTTTAGATTCTGTAAAAGGCAATGTCACAGGTAAAACT 773
|||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GCCAGCCAAATCGACCCGACTTCTTTAGATTCCGTAAAAGGCAATGTCACAGGTAAAACT 599
Query 774 ACTGAAGGTCTGCAAACTGGTTTAGCCTTAGTCTCATATAGTGATGAAAGTGAAGACGAT 833
||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 ACTGAAGCTCTGCAAACAGGTTTAGGCTTAGTCTCATATAGTGATGAAAGTGAAGACGAT 659
Query 834 GATTAATATTTTGTGTTACTGACTCA 859
|||||| |||||||||||||||||||
Sbjct 660 GATTAACATTTTGTGTTACTGACTCA 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5