BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62160.1

Length=1443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939302 jgi|Araly1|939302|scaffold_503493.1                        673    0.0  


> Ahg939302 jgi|Araly1|939302|scaffold_503493.1
Length=466

 Score =  673 bits (364),  Expect = 0.0
 Identities = 410/433 (95%), Gaps = 0/433 (0%)
 Strand=Plus/Plus

Query  12   TCAAGTCAATCTTTTCTTCAATGGCTTTTTCATTAACCAGAGTAAACCGAGTTCTTATTC  71
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCAAGTAAATCTTTTCTTCAATGGCTTTTTCATTAACCAGAGTAAACCGAGTTCTTATTC  60

Query  72   AAGCATGTGAAACGACCCCATCAGTAGTGTTGGATCTGTCCTTAATCGATAATATTCCGG  131
            || |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  61   AACCATGTGAACCGACTCCATCTGTAGTGTTGGATCTGTCCTTAATCGATAATATTCCTG  120

Query  132  TTCTACGATGTTTCGCTAGAACAATACATGTGTTTACTCATGGACCTGATGCAGCTAGAG  191
            | |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct  121  TCCTACGATGTTTCACTAGAACTATATATGTGTTTACACATGGACCTGATGCAGCTAGAG  180

Query  192  CCATACAAGAGGCATTGGCTAAAGCACTTGTCTCTTACTATCCCTTGTCCGGTAGATTGA  251
             ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  181  TCATACGAGAGGCATTGGCTAAAGCACTTGTCTCTTACTATCCTTTGTCTGGTAGATTGA  240

Query  252  AAGAGTTAAACCAAGGTAAACTTCAGATCGATTGTACCGGGAAAACTGGAATTTGGTTCG  311
            |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct  241  AAGAGTTAAACCAAGGTAAAATTCAGATCGATTGTACCGGGAAAACCGGAATTTGGTTCG  300

Query  312  TTGATGCGGTTACTGATGTTAAGCTAGAGAGTGTTGGTTATTTCGACAATCTAATGGAAA  371
            ||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct  301  TTGATGCCGTTACGGATGTTACTCTAGAGAGTGTTGGTTATTTCGACAATCTAATGGAAA  360

Query  372  TACCTTACGATGATCTCCTTCCTGATCAAATCCCTAAAGATGATGATGCAGAACCGCTTG  431
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct  361  TACCTTACGATGATCTCCTTACTGATCAAATCCCTAAAGATGATGATGCAGAACTGCTTG  420

Query  432  TCCAAATGCAGGT  444
            |||||||||||||
Sbjct  421  TCCAAATGCAGGT  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53973877165


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5