BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62170.1
Length=2211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486726 jgi|Araly1|486726|fgenesh2_kg.5__2718__AT3G62170.1 3328 0.0
Ahg483877 jgi|Araly1|483877|fgenesh2_kg.4__2937__AT2G47040.1 246 4e-64
> Ahg486726 jgi|Araly1|486726|fgenesh2_kg.5__2718__AT3G62170.1
Length=2191
Score = 3328 bits (1802), Expect = 0.0
Identities = 2065/2183 (95%), Gaps = 54/2183 (2%)
Strand=Plus/Plus
Query 1 ACCAGCCCCATTAATAAACCACCGGGCTCTGTTTCAATaaaaaaaaTCCCCTCCCTCTCA 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ACCAGCCCCATTAATAAACCACCGGGCTCTGTTTTAATAAAAAAAATCCCCTCCCTCTCC 60
Query 61 TATTTACCTCCCGAATAAAACCGGAGGGAGAGaaaaaacataaaaagcaaaaaaaaaggt 120
|||||||||||||||||||||||||||||||| |||| | ||||| | ||||||
Sbjct 61 TATTTACCTCCCGAATAAAACCGGAGGGAGAG--AAAA-A-AAAAATC-----AAAAGG- 110
Query 121 aaaatcaaaaaggggaaaaatatataacaacaaaaaaaaaaagttagaaaaaaTGGCAGT 180
|| |||||| ||| | || || ||||||| || ||||||||||||||
Sbjct 111 --------GAA----AAAAAT-TAT-A-AA-AACCAAAAAAA-TTTGAAAAAATGGCAGT 153
Query 181 AGG-AAAGGTTGTGGTATCTGTGGCATCACTCCTCCTAGTGGTGGGTGTTGCCATAGGAG 239
||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 AGGTAAA-GTTGTGATATCTGTGGCATCACTCCTCCTAGTGGTGGGTGTTGCCATAGGAG 212
Query 240 TTATCACGT-TCGTTAATAAAGGAGGCGGCGCCAATGGCGACAGTAATGGTCCCATAAAC 298
| ||||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 213 TGATCACGTAT-GTTAATAAAGGAGGCGGCGCCAACGGCGACAGTAATGCTCCCATAAAC 271
Query 299 TCTCATCAGAAAGCGGTTCAGACAATTTGCCAGTCAACCACAGACCAAGGTTCGTGCGCG 358
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 272 TCTCATCAGAAAGCGGTTCAGACAATTTGTCAGTCAACCACAGACCAAGGTTCGTGCGCG 331
Query 359 AAAACACTCGACCCAGTCAAAAGTGATGATCCAAGCAAGCTTGTCAAAGCCTTCCTGATG 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 AAAACACTCGAGCCAGTCAAAAGTGATGATCCAAGCAAGCTTGTCAAAGCCTTCCTGATG 391
Query 419 GCTACTAAAGACGCGATCACAAAATCCTCAAACTTCACGGCTTCGACCGAAGGAGGTATG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 392 GCTACTAAAGACGCGATCACAAAATCCTCAAACTTCACGGCTTCGACCGAAGGAGGCATG 451
Query 479 GGTACTAACATGAACGCGACCAGCAAAGCCGTTCTTGATTACTGCAAGAGAGTATTGA-T 537
|| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
Sbjct 452 GGGACTAACATGAACGCGACGAGCAAAGCCGTTCTGGATTACTGCAAGAAAGTATTGACT 511
Query 538 GTACGCTCTTGAGGATCTTGAGACCATTGTTGAAGAGATGGGTGAGGATCTTCAGCAGAG 597
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 512 -TACGCTCTTGAGGATCTTGAGACCATAGTTGAAGAAATGGGTGAAGATCTTCAGCAGAG 570
Query 598 TGGAACTAAGCTTGACCAGCTCAAACAATGGTTAACTGGAGTTTTCAACTACCAAACCGA 657
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 571 TGGAACTAAGCTTGACCAGCTTAAACAATGGTTAACCGGAGTTTTCAACTACCAAACCGA 630
Query 658 TTGTCTTGACGACATCGAGGAAGTTGAGCTAAAGAAGATCATGGGTGAAGGAATCTCTAA 717
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TTGTCTTGATGATATCGAGGAAGTTGAGCTAAAGAAGATCATGGGTGAAGGAATCTCTAA 690
Query 718 CTCCAAGGTTTTGACCAGTAACGCTATCGATATCTTCCATTCCGTTGTTACCGCGATGGC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CTCCAAGGTTTTGACCAGTAACGCTATCGATATCTTCCATTCCGTTGTTACCGCGATGGC 750
Query 778 CCAAATGGGTGTCAAAGTCGACGATATGAAGAACATAACCATGGGAGCCGGAGCCGGTGG 837
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | ||
Sbjct 751 CCAAATGGGTGTCAAAGTCGACGATATGAAGAACATAAGCATCGGAGCCGGAGCCAGCGG 810
Query 838 AG---CTGCACGTCGCCTTCTTGAAGACAACGACTCTAAGGGACTCCCCAAATGGTTTTC 894
|| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 811 AGCCCCTGCACGTCGCCTTCTTGAAGACACCGACGCTAAGGGACTCCCCAAATGGTTTTC 870
Query 895 TGGTAAAGACAGGAAGCTTATGGCTAAGGCCGGACGTGGCGCTCCAGCT----G-GC--- 946
||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 871 TGGTAAAGACAGGAAGCTTATGGCTAAGGCCGGACGTGGCGCTCCAGCTGGCGGTGCAGG 930
Query 947 -GGTGATGATGGTATCGGTGAAGGCGGTGGTGGTGGCGGTAAGATCAAGGCGACTCATGT 1005
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 931 TGGTGATGATGGTATCGGTGAAGGCGGTGGTGGTGGCGGTAAGATCAAGGCTACTCATGT 990
Query 1006 AGTGGCTAAGGATGGAAGTGGACAGTTTAAGACCATTTCTGAGGCGGTTATGGCTTGCCC 1065
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 991 AGTGGCTAAGGATGGAAGTGGACAGTTTAAGACCATTTCTCAGGCGGTTATGGCTTGCCC 1050
Query 1066 GGATAAAAACCCTGGAAGGTGCATTATCCATATCAAGGCTGGTATCTACAATGAACAAGT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GGATAAAAACCCTGGAAGGTGCATTATCCATATCAAGGCTGGTATCTACAATGAACAAGT 1110
Query 1126 CAGAATCCCTAAGAAGAAGAACAACATTTTCATGTTCGGTGATGGTGCTACACAAACCAT 1185
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CACTATCCCTAAGAAGAAGAACAACATTTTCATGTTCGGTGATGGTGCTACACAAACCAT 1170
Query 1186 CATTACCTTTGACAGAAGTGTTAAACTTAGCCCAGGAACCACTACTTCACTCAGTGGCAC 1245
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1171 CATTACCTTTAACAGAAGTGTTAAACTTAGCCCAGGAACCACCACTTCACTCAGTGGCAC 1230
Query 1246 CGTTCAGGTCGAATCTGAGGGATTCATGGCGAAATGGATTGGGTTTAAGAACACTGCTGG 1305
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1231 CGTTCAGGTTGAATCTGAGGGATTCATGGCGAAATGGATCGGGTTTAAGAACACTGCTGG 1290
Query 1306 TCCATTGGGACACCAAGCGGTCGCACTCCGTGTGAACGGAGACCGTGCGGTCATATTCAA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 TCCATTGGGACACCAAGCGGTCGCACTCCGTGTGAACGGAGACCGTGCGGTCATATTCAA 1350
Query 1366 CTGTAGATTCGACGGTTACCAAGACACACTCTACGTCAACAACGGACGTCAATTCTACAG 1425
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1351 CTGTAGATTCGACGGTTACCAAGACACTCTCTACGTCAACAACGGACGTCAGTTCTACAG 1410
Query 1426 GAACATTGTTGTATCCGGTACAGTGGATTTCATCTTCGGAAAATCCGCAACTGTGATCCA 1485
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1411 GAACATTGTTGTATCCGGTACAGTGGATTTCATCTTCGGAAAATCCGCCACTGTGATCCA 1470
Query 1486 AAACTCTCTCATCCTCGTCCGAAAGGGAAGCCCCGGACAATCCAACTACGTTACGGCTGA 1545
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1471 AAACTCTCTAATCCTCGTCCGAAAGGGCAGCCCCGGACAATCCAACTACGTTACAGCTGA 1530
Query 1546 CGGTAATGAAAAGGGTGCAGCGATGAAGATCGGTATCGTCCTCCATAACTGCCGTATCAT 1605
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1531 CGGTAATGAAAAGGGTGCAGCGATGAAGATCGGTATCGTTCTCCATAACTGCCGTATCAT 1590
Query 1606 ACCGGACAAGGAGCTCGAAGCTGACAAGCTAACCATCAAATCGTACCTAGGAAGGCCGTG 1665
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1591 ACCAGACAAGGAGCTCGAAGCTGACAAGCTAACCATCAAATCGTTCCTAGGAAGGCCGTG 1650
Query 1666 GAAGAAGTTTGCCACGACTGTGATTATTGGAACTGAGATTGGTGATTTGATTAAACCAGA 1725
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 GAAGAAATTTGCCACGACTGTGATTATTGGAACTGAGATTGGTGATTTGATTAAACCAGA 1710
Query 1726 AGGATGGACCGAATGGCAAGGAGAACAAAACCACAAGACTGCTAAATACATTGAGTTCAA 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 AGGATGGACCGAATGGCAAGGAGAACAAAACCACAAGACTGCTAAATACATTGAGTTCAA 1770
Query 1786 TAACCGTGGACCGGGAGCTGCCACTACTCAGAGGCCTCCTTGGGTTAAGGTGGCTAAGTC 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 TAACCGTGGACCGGGAGCTGCCACTACTCAGAGGCCTCCTTGGGTTAAGGTGGCTAAGTC 1830
Query 1846 TGCGGCTGAGGTTGAAACTTACACCGTGGCTAACTGGGTTGGTCCAGCTAACTGGATCCA 1905
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1831 TGCGGCTGAGGTTGAAGCTTACACCGTGGCTAACTGGGTTGGTCCAGCTAATTGGATCCA 1890
Query 1906 AGAAGCCAACGTGCCCGTCCAACTAGGATTGTAAGAGGACAACA-CAA-AAAA----GTT 1959
||||||||||||||||||||| |||||||||||||| |||||| ||| |||| ||
Sbjct 1891 AGAAGCCAACGTGCCCGTCCAGCTAGGATTGTAAGAAAACAACAACAACAAAAAAAAGTA 1950
Query 1960 AAGAATAAAACAGTATGTGATAATGTTAAGGTAACGATACGACGTCGTCTCTGGGGATCA 2019
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1951 AAGAATAAAACAGTATGTGATAATGATAAGGTAACGATACGACGTCGTCTCTAGGGATCA 2010
Query 2020 GAACTCTTTTTTGGATACTATATACAAAGATAGGGTTCTAGACGTGTTGAGATGATGTTT 2079
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2011 GAACTCTTTTTTGGGTACTAAATACAAAGATAGGGTTCTAGACGTGTTGAGATGAAGTTT 2070
Query 2080 GTATAAGATTGCTTTCGTTTCACGTGCAAAAGAGGaaaaaaaaTTGTTTTGTT--Atttt 2137
||||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 2071 GTATAAGATTGCTTTTGTTTCACGTGCAAATGAGGAAAAAAAAATGTTTTGTTTCATTTT 2130
Query 2138 tttt-GTAGTACAAATAATTAAt 2159
|||| ||| ||||||||||||||
Sbjct 2131 TTTTTGTATTACAAATAATTAAT 2153
> Ahg483877 jgi|Araly1|483877|fgenesh2_kg.4__2937__AT2G47040.1
Length=1888
Score = 246 bits (133), Expect = 4e-64
Identities = 372/485 (77%), Gaps = 26/485 (5%)
Strand=Plus/Plus
Query 307 GAAAGCGGTTCAGA-CAATTTGCCAGTCAACCACAGACCAAGGTTCGTGCG-CGAAAACA 364
||||||||||| || ||||||| || | || | ||| ||| || || | | |||||
Sbjct 252 GAAAGCGGTTC-GAGGAATTTGCGAGGCGACTTCCGACAAAGCCTCATGTGTC-AAAACT 309
Query 365 CTCGACCCAGTCAAAAGTGATGATCCAAGCAAGCTTGTCAAAGCCTTCCTGATGGCTACT 424
||||| || ||||| || ||||| |||| |||||| |||| || ||| || | |||||
Sbjct 310 CTCGAGCCGGTCAAGAGCGATGACCCAAACAAGCTAATCAAGGCTTTCATGCTCGCTACC 369
Query 425 AAAGACGCGA-TCACAAAATCCTCAAACTTCACGGCTTC-GACCGAAGGAGGTATGGG-T 481
| |||||| | | || | ||| || |||||||||| || ||||||| | ||||| |
Sbjct 370 AGAGACGC-ATTAACCACATCGTCTAACTTCACGG-GTCAAACCGAAGTAAACATGGGCT 427
Query 482 ACTAACATGAACG-CGACCAGCAAAGCCGTTCTTGATTACTGCAAGAGAGTATTGATGTA 540
| | ||| || | | || |||||||||||||||||||||||||||||| || |||||
Sbjct 428 -CGAGCAT-CTCGCCAAACAACAAAGCCGTTCTTGATTACTGCAAGAGAGTTTTCATGTA 485
Query 541 CGCTCTTGAGGATCTTGAG-ACCATTGTTGAAGAGATGGGTGAGGATCTTCAGCAGAGT- 598
||| ||||||||||| || ||||||||||| || |||||||| |||||| | |||| |
Sbjct 486 CGCGCTTGAGGATCTC-AGCACCATTGTTGAGGAAATGGGTGAAGATCTTAACCAGA-TC 543
Query 599 GGAA-CTAAGCTTGACCAGCTCAAACAATGGTTAA-CTGGAGTTTTCAACTACCAAACCG 656
|| | | || | |||||||||||||||||||||| | || |||| ||| |||||||| |
Sbjct 544 GGGAGCAAAA-TCGACCAGCTCAAACAATGGTTAATC-GGTGTTTACAATTACCAAACTG 601
Query 657 ATTGTCTTGACGACATCGAGGAAGTTGAGCTAAAGAA-GATC-ATGGGTGAAGGAATCT- 713
||||||||||||| ||||| |||| ||| ||| ||| || | || ||||| || || |
Sbjct 602 ATTGTCTTGACGATATCGAAGAAGATGATTTAA-GAAAGA-CGATTGGTGAGGGCAT-TG 658
Query 714 CTAACTCCAAGGTTTTGACCAGTAACGCTATCGATATCTTCCATTCCGTTGTTACCGCGA 773
| ||||||||| || | || | |||||||| || |||||||| || |||| ||| |
Sbjct 659 CAAACTCCAAGATTCTCACTACCAACGCTATTGACATCTTCCACAATGTCGTTAGCGCCA 718
Query 774 TGGCC 778
|||||
Sbjct 719 TGGCC 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83227185325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5