BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62180.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939304 jgi|Araly1|939304|scaffold_503495.1 1029 0.0
> Ahg939304 jgi|Araly1|939304|scaffold_503495.1
Length=690
Score = 1029 bits (557), Expect = 0.0
Identities = 635/673 (94%), Gaps = 3/673 (0%)
Strand=Plus/Plus
Query 1 ATGAACACTCCAATCAAACTCTTCTTTCTCTTCATATTCGTTGCCGCAACCGCAACGGCT 60
|||||||||||| |||||||||||||||||||| | || || || ||||||||||| |||
Sbjct 21 ATGAACACTCCATTCAAACTCTTCTTTCTCTTCCTCTTTGTCGCTGCAACCGCAACCGCT 80
Query 61 AAACCAGTCAAACGAACGAACTACCTTTTCACACCGCACGCCAAAGCAGTCGCGGGAATC 120
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 81 GCGCCAGTCAAGCGAACGAACTACCTTTTCACACCGCACGCAAAAGCAGTAGCGGGAATT 140
Query 121 TGCACCGTTATCCCAACGGACACAAGTCTATGTTGCAAAACCCTTAAACACGTTCCTACC 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TGCACCGTTATCCCAACAAACACAAGTCTATGTTGCAAAACCCTTAAACACGTTCCTACC 200
Query 181 AATGACCCCATCGAACTAATCCGAGCATTAGTGGCTGCCGCTGAAACATCCGTCAAACAA 240
||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 201 AATGACCCCATCGAATTAATCCGAGCATTAGTGGTTGCGGCTGAAACATCCGTCAAACAA 260
Query 241 AGTGTGACTTTCCTCTCTGGAATCAAACCAAAACACATGTCAGACGCAACCGCAACCGCA 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 261 AGTGTGACTTTCCTCTCTGGAATCAAACCAAAACACAAATCAGACGCAACCGCAACGGCA 320
Query 301 GTGGTCAACAGCTGCGAGAAAAACTTGAATTACGCGTTGGAAGATTTCGCCGATTTTTGG 360
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 321 GCGGTCAACAGCTGCGAGAAAAACTTGAAGTACGCGTTGGAAGATTTCGCCGATTTTTGG 380
Query 361 AAAGCTACGGGGAAAGATGTAACGACGTTGGCTCATAATTATTTTACGTGTAAAAAAGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AAAGCTACGGGGAAAGATGTAACGACGTTGGCTCATAATTATTTTACGTGTAAAAAAGAG 440
Query 421 TTAATGTCAATCATGGGGTATCATTCGACTTGTTTGGACGATATTGAAGACAAGATTTTG 480
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 441 TTAATGTCAATCATGGGGTATCATTCGACTTGTTTGGATGATATAGAAGACAAGAACTTG 500
Query 481 TTGAAGGAAGTGGGGATTGGGATTGGAGTTGGGAAGAATCTAACAAGTGATTCTTTTGAT 540
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 501 TTGAAGGAAGTGGAGATTGGGATTGGACTTGGGAAGAATCTAACAAGTGATTCTTTTGAT 560
Query 541 GTGTTTAATAACTTGAATACTATTTTCAAGACTTTTGGTATTAAGGTGAAGCTTAACGAG 600
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTGTTTAATAATTTGAATACCATTTTCAAGACTTTTGGTATTAAGGTGAAGCTTAACGAG 620
Query 601 GAAGACACTTCGCCCCGACCGCCACCCTTGTCTGATTATTATTACTGATGATCGTATTAA 660
|||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||
Sbjct 621 GAAGACACTTCGCCCCGACCGCCACCGTTGTCTGATTATTACTACTGATCAT---ATTAA 677
Query 661 GGGATTGGATGTA 673
|||||||||||||
Sbjct 678 GGGATTGGATGTA 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5