BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62190.1

Length=1160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg349284 jgi|Araly1|349284|fgenesh1_pg.C_scaffold_5002676           688    0.0  


> Ahg349284 jgi|Araly1|349284|fgenesh1_pg.C_scaffold_5002676
Length=417

 Score =  688 bits (372),  Expect = 0.0
 Identities = 402/417 (96%), Gaps = 0/417 (0%)
 Strand=Plus/Plus

Query  26   ATGGAGGTGGAGGAAGCCAAGATCTTGCTCGGCTTTCCTCCTAATTCTCGTCCCGATCCT  85
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGAGGTGGAGGAAGCCAAGATCTTGCTCGGCTTTCCTCCTAAATCTCGTCCCGATCCT  60

Query  86   TCTCAGGTTAAAGCTGCTTACAGGAAGAAAGTATGGGAATCACATCCTGACTTATTTCCT  145
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  61   TCTCAGGTTAAAGCTGCTTACCGGAAGAAGGTATGGGAATCACATCCTGACTTATTTCCT  120

Query  146  GATGATCAGAAGCTTGTTGCCGAGTCTAAGTTCAAATCGATATCTGAAGCTTATTCTTGC  205
            |||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  GATGATCAGAAGCAAGTTGCCGAGTCTAAGTTCAAATCGATATCTGAAGCTTACTCTTGC  180

Query  206  CTAGAGTCTGGTGATGTTAAAGGTCAATGGTATTACAGAGCAGGTGTGTATTCGAGGGTC  265
            |||||||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||
Sbjct  181  CTAGAGTCTGGTGATGGTAAAGGTCAACGATATTACAGAGCAGGTGTATATTCGAGGGTC  240

Query  266  GTCAAGACTGGGGTTCCTCGGCCATATTCATCTGCCAAAAGAGGTAACCGTTGGTTGATC  325
            ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCAAGACTGGAGTTCCTGGGACATATTCATCTGCCAAAAGAGGTAACCGTTGGTTGATC  300

Query  326  GGTGCACCTTTCCTTTTGATTGTCTTAGGAACCATCGGACTTGGTGGAATCAAAGCTAAC  385
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  301  GGTGCACCTTTCCTTTTGATCGTCTTAGGAACCATCGGACTTGGTGGAATCAAAGCTAAC  360

Query  386  AGGGCATATAATCTGCAAAAACAGACGTTCCCATCTCACAATCCTTTCCTTCCTTGA  442
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  361  AGGGCATATAATCTGCAAAAACAGACGTTCCCGTCTCACAATCCTTTCCTTCCTTGA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43269510795


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5