BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62200.1
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486728 jgi|Araly1|486728|fgenesh2_kg.5__2720__AT3G62200.1 3088 0.0
> Ahg486728 jgi|Araly1|486728|fgenesh2_kg.5__2720__AT3G62200.1
Length=2080
Score = 3088 bits (1672), Expect = 0.0
Identities = 1958/2094 (94%), Gaps = 28/2094 (1%)
Strand=Plus/Plus
Query 3 CCCTTATTCGAAGATTCCTTTGGCGATTCGTAGTAGTAGCTTACGGCGGCGGAAGATCGA 62
||||||||||||||||||| |||||||||| | |||||||||||||||||||||| |||
Sbjct 1 CCCTTATTCGAAGATTCCTCTGGCGATTCG-A--AGTAGCTTACGGCGGCGGAAGAACGA 57
Query 63 TGTCGACGAACTCGGCGAGTGATGGGGATTTCGGAACTAATTCGGTGCCGGCAGAGATGG 122
||||||| ||| || |||| ||||||||||||||||| ||| ||| |||| |||||||
Sbjct 58 TGTCGACAAACACGACGAGCGATGGGGATTTCGGAACGGCTTCAGTGGCGGCGGAGATGG 117
Query 123 CTGAGGCTCAGTACGTGAGAGCGAAGACTTCAGTGTGGTGGGACATAGAGAATTGCCAAG 182
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 118 CTGAGGCTCAGTACGTGAGGGCGAAGACTTCAGTGTGGTGGGATATAGAGAATTGTCAAG 177
Query 183 TCCCTAACGGTCTTGATGCTCATGGAATTGCTCAGAATATCACTTCGGCGCTTCAGAAGA 242
|||| || |||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 178 TCCCAAAAGGTCTTGACGCTCATGGAATTGCTCAGAATATTACTTCTGCGCTTCAGAAGA 237
Query 243 TGAACTATTGTGGTCCTGTTTCTATCTCTGCTTATGGTGATACCAATCGCATCCCTTTGA 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGAACTATTGTGGTCCTGTTTCTATCTCTGCTTATGGTGATACCAATCGCATCCCTTTGT 297
Query 303 CCATTCAACATGCTCTTAATTCCACCGGAATTGCGCTCAACCACGTCCCCGCCGGGGTGA 362
| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 298 CGATCCAACACGCTCTTAATTCCACCGGAATTGCGCTCAACCACGTCCCTGCCGGCGTGA 357
Query 363 AAGATGCGAGTGATAAGAAGATACT-AGTGGACATGTTGTTTTGGGCGTTAGACAATCCT 421
|||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 358 AAGATGCGAGTGATAAGAAGAT-CTTAGTGGACATGTTGTTTTGGGCGTTGGACAATCCT 416
Query 422 GCACCTGCGAATTTTATGTTAATATCAGGAGACAGAGACTTCTCCAATGCTCTTCACGGA 481
|| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 417 GCGCCTGCAAATTTTATGTTAATATCAGGAGATAGAGACTTTTCCAATGCTCTTCACGGA 476
Query 482 TTGAGAATGAGACGTTACAATGTTCTTTTGGCACAGCCTCTCAAAGCATCTGTGCCACTT 541
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 TTGAGAATGAGACGTTACAATGTTCTATTGGCACAGCCTCTCAAAGCATCTGTGCCACTT 536
Query 542 GTTCATGCTGCAAAGACTGTGTGGCTTTGGACTAGCCTATCTGCTGGTGGAATCCCTCTT 601
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 537 GTTCATGCTGCAAAGACTGTGTGGCTTTGGACAAGCCTATCTGCTGGAGGAATCCCTCTT 596
Query 602 ACACGAGCCGAAAGCTTACAACTTGTTGCCAACCAAACGACCCCAA-AGCCTGGTTCAGA 660
||||||||||||||||||||||||||||||||||| |||||||||| | | |||||||||
Sbjct 597 ACACGAGCCGAAAGCTTACAACTTGTTGCCAACCAGACGACCCCAACATC-TGGTTCAGA 655
Query 661 GATTCCATCAAGCCAACCTCTGGATTCAAATTCTGACTCCAGGAGAGTCTTTGACAACAA 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 GATTCCATCAAGCCAACCTCTGGATTCAAATTTTGACTCCAGGAGAGTCTTTGACAACAA 715
Query 721 ATCCAAAGTCAAATATGTTCCAAAACCATCTAATCATCAGCCTAACAATAATTACCGTCA 780
| |||| || ||||| ||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 716 ACCCAAGGTGAAATACCTTCCAAAACAATCAAATCATCAGCCTAACAATAACTACCGTCA 775
Query 781 GCAACAACAGAATACTCAAGGGAAACAGTTTAAGAAAGCCCCACATGAGTTCTTTGGCAC 840
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GCAACA---GAACACTCAAGGGAAACAGTTTAAGAAAGCCCCACATGAGTTCTTTGGCAG 832
Query 841 TAGCGAGCCATCTGTTTCCACTAGCAGACCTCCTCCTCCCAATTTACCCTCTAGCAATGT 900
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 833 TAGCGAGCCATCTGTTTCCACTAGCAGACCTCCTCC-C--AATTTACCCTCTAGCAATGT 889
Query 901 TAACACTTTCCCTGGTAATGTCATGACTAATCCTCAGAATCAGAATCAGTACACTTATCC 960
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 890 TAACACTTTCCCTGGTAATGTGATGACTAATCCTCAGAATCAGAATCAGTACAATTATCC 949
Query 961 TCCTCGCCCTGGTCCATTCCCTCCTAGACAACCTTACCCTAACACTGATCCTTCTTGGAA 1020
|||||| |||||||| |||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 950 TCCTCGACCTGGTCCTTTCCCTCCCAGACAACCTTACCCTAACCCTGATCCATCTTGGAA 1009
Query 1021 TAATGGAAACAGCATCCCAAACCATGCTCAGAACTATTATCCCAATGCTG-CTAGGCCAG 1079
||||||||| ||||||||||| |||||||||||||||||||||||||||| | || ||||
Sbjct 1010 TAATGGAAATAGCATCCCAAATCATGCTCAGAACTATTATCCCAATGCTGGC-AGACCAG 1068
Query 1080 GTGCTGCCACTATGCGGCCACCTTATGGTAATGTTTTCCGTCCTTACCGCCCAGAGAATC 1139
||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1069 GTGCTTCTAATATGCGGCCACCTTATGGTAATGTTTTCCGTCCGTACCGCCCAGAGAATC 1128
Query 1140 TGAATCCTCC-AGTTGGTAATGGTTTCCGTCCAATGCAGCACCCGCGAAATGACGGGCCT 1198
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TGAATCCTCCTA-TTGGTAATGGTTTCCGTCCAATGCAGCACCCGCGAAATGACGGGCCT 1187
Query 1199 AGATTTCCGTCTCCACCTCTCTTGACTCCACTTGATATCAGCAATCTAAGTGTGTCTCAA 1258
|| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 1188 AGGTTTCCGTCTCCACCTCTCTTTACTGCACCTGATATCAGCAATCTAAGTGTGTCTCAA 1247
Query 1259 TATCCTAGTCAAACTCAAAACCGTCCTAATTTCAATCCTCAAGTTAGACAAGAATTCAGA 1318
|||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 1248 TATCCTAGTCAAACTCAAGATCGTCCTAATTTTAATCCTCAAGTTAGACAAGAATTCAGA 1307
Query 1319 CCAAAGATGGAATCCTCATATACTCATAATGGTCCAAATAAGAGTTATATTCCACGGTGT 1378
||||||| ||||||||||||| |||||||||||||||||||| ||||| || ||||| |
Sbjct 1308 CCAAAGACGGAATCCTCATATTCTCATAATGGTCCAAATAAGGGTTATCTTACACGGACT 1367
Query 1379 AGTAGTGCCCCGGTAACTCAATCTACGACAACCACTGCCCACACCTACCCTTCCAGTCCT 1438
||||||||||| |||||||| |||||||||||||||| | ||||| || |||||||||||
Sbjct 1368 AGTAGTGCCCCAGTAACTCATTCTACGACAACCACTGGCTACACCAACTCTTCCAGTCCT 1427
Query 1439 GGAGTTCCACCTTCTCAGCCTCCAATGGTTACTGGATCTGGTTCTAGCAATGATAGGTGG 1498
|||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 1428 GGAGTTCCACCTTCTCAGCCTCCAGTGGTTACTGGATCTGGTTCTAGCAATGGTATGTGG 1487
Query 1499 GGAACACAAGAGTGTCCACCACCATCTGAGTATGTTCAAGGCCTTATAGGCGTTATCTTA 1558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GGAACACAAGAGTGTCCTCCACCATCTGAGTATGTTCAAGGCCTTATAGGCGTTATCTTA 1547
Query 1559 CATGCTCTACACATCTTGAAAACTGAAAAAGTTATGCCTACCGAGCCAAATATCTCGGAT 1618
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CATGCTCTAAACATCTTGAAAACTGAAAAAGTTATGCCTACCGAGCCAAATATCTCGGAT 1607
Query 1619 TGCATTCAGTATGGAGATCCTAAGCATCACGGTACTGACGTAAAGAAGGCTTTGGAAAGT 1678
||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct 1608 TGCATTCAGTACGGAGATCCAAAGCATCGCGGTACTGACATAAAGAAGGCTTTGGAAAGT 1667
Query 1679 GCTTTGGAGCATCATATGATCATGATGACAAATGTAGGTAAACTAAAGCTCTACATTGGC 1738
|| |||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1668 GCATTGGAGCATCATATGATCGTGGTGTCAAATGTAGGTAAACTAAAGCTCTACATTGGC 1727
Query 1739 AAAAATGAAGCTCTATGGAACTGTGTAAACCCTTTAGGGGCAAACGCTAAGCAATACCCA 1798
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 AAAAATGAAGCTCTTTGGAACTGTGTAAACCCTTTAGGGGCAAACGCTAAGCAATACCCA 1787
Query 1799 AAAGAAACTTGGGATAGAATACAACAGTTTCTAACCTCATCTTCTGGGCGTGTGGAGTTT 1858
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 1788 AAAGCAACTTGGGATAGAATACAAGAGTTTCTAACCTCATCTTCTGGTCGTGTGGCGTTT 1847
Query 1859 ACGGCAACT-ACGTGCAGGTATGAAGCTGCACAAGTTCTGAAAAAGGAATGTCTAAAAGA 1917
||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1848 ACGGCAACTCA-GTGCAGGTATGAAGCTGCCCAAGTTCTGAAAAAGGAATGTCTAAAAGA 1906
Query 1918 GTTTACTTTAGGTGACATACTACAGATCTTGAATATAACAGCAACCACAAAGAAATGGAT 1977
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 GCTTACTTTAGGTGACATACTACAGATCTTGAATATAACAGCAACCACAAAGAAATGGAT 1966
Query 1978 TACCCATCATCAAACAGGATGGAAACCAATTACTATTAGCCTTGCTGCAGAGAC------ 2031
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1967 TACTCATCATCAAACCGGATGGAAACCAATTACTATTAGCCTTGCTGCAAAGACAAAAGA 2026
Query 2032 --CA-CAAACGAGACAGCTACTGAAGCGGATCCAGGTATCCAAACCGTTGCCTG 2082
|| |||||||||||||||| ||| ||||| ||||||||||||| ||||||||
Sbjct 2027 GACAACAAACGAGACAGCTACCGAAACGGATACAGGTATCCAAACTGTTGCCTG 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78351633965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5