BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62220.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324657 jgi|Araly1|324657|fgenesh1_pm.C_scaffold_5002201 1773 0.0
Ahg483882 jgi|Araly1|483882|fgenesh2_kg.4__2942__AT2G47060.2 928 0.0
> Ahg324657 jgi|Araly1|324657|fgenesh1_pm.C_scaffold_5002201
Length=1086
Score = 1773 bits (960), Expect = 0.0
Identities = 1044/1086 (96%), Gaps = 0/1086 (0%)
Strand=Plus/Plus
Query 106 ATGAGCTGTTTTGGCTGTTGCCGTGAAGATGATTTGCCTGGAGCTAATGATTATGGAGGT 165
||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |
Sbjct 1 ATGAGCTGTTTTGGCTGTTGCCGCGACGATGATTTGCCTGGAGCTGCTGATTATGGAGCT 60
Query 166 CACAATATGACCAAACAATCTGGAGGAAATGATGGAAGGCGCAACGGCTCTGAAACTGCA 225
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 61 CACAATATGACCAAACAATCTGGAGGAAATGATGGAAGACGCAATGGTTCTGAAACTGCA 120
Query 226 CAAAAAGGTGCTCAGAGTGTGAAAGTGCAGCCTATAGAAGTAGCTGCTATTCTCGCTGAT 285
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAAAAGGTGCTCAAAGTGTGAAAGTGCAGCCTATAGAAGTAGCTGCTATTCTCGCTGAT 180
Query 286 GAACTGATTGAAGCAACGAATGATTTTGGAACTAATTCTCTTATCGGTGAAGGCTCGTAT 345
|||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GAACTGATAGAGGCAACTAATGATTTTGGAACAAATTCTCTTATCGGTGAAGGCTCGTAT 240
Query 346 GCGAGAGTGTATCACGGGGTGTTAAAGAATGGTCAGCGTGCAGCCATTAAAAAGTTAGAT 405
|||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||||
Sbjct 241 GCGAGAGTGTATCACGGGGTGTTAAAGAATGGCCAGCCTGCCGCGGTTAAAAAGTTAGAT 300
Query 406 TCTAACAAACAGCCTAATGAAGAGTTTCTAGCACAGGTTTCCATGGTTTCGAGGTTGAAG 465
||||||||||||||| |||| || ||||| || |||||||||||||||||||||||||||
Sbjct 301 TCTAACAAACAGCCTGATGAGGAATTTCTTGCCCAGGTTTCCATGGTTTCGAGGTTGAAG 360
Query 466 CATGTTAACTTTGTTGAGCTGCTTGGTTACTCTGTTGATGGGAATTCGAGGATACTTGTC 525
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CATACTAACTTTGTTGAGCTGCTTGGTTACTCTGTTGATGGGAATTCGCGGATACTTGTC 420
Query 526 TTTGAGTTTGCCCAAAATGGATCTCTTCATGATATTCTTCACGGGAGAAAAGGTGTGAAG 585
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TTTGAGTTTGCCCAAAATGGATCTCTTCATGATATTCTTCATGGGAGAAAAGGTGTGAAG 480
Query 586 GGAGCAAAGCCTGGTCCACTCTTGTCGTGGCATCAACGAGTGAAGATTGCTGTTGGAGCA 645
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GGAGCAAAGCCTGGTCCACTCTTGTCGTGGCATCAACGAGTGAAGATTGCGGTTGGAGCA 540
Query 646 GCAAGAGGGCTTGAGTATTTACATGAAAAGGCAAATCCACATGTCATCCACCGTGACATA 705
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GCAAGAGGGCTTGAGTACTTACATGAAAAGGCGAATCCACATGTCATCCACCGTGACATA 600
Query 706 AAATCCAGCAATGTTCTAATCTTTGATAACGATGTAGCCAAGATAGCTGACTTTGATCTC 765
|| |||||||| ||||||||||||||||| |||||||| || || ||||||||||||||
Sbjct 601 AAGTCCAGCAACGTTCTAATCTTTGATAATGATGTAGCTAAAATTGCTGACTTTGATCTG 660
Query 766 TCAAATCAAGCTCCTGATATGGCAGCACGCCTTCATTCAACTCGTGTTCTTGGAACCTTT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAAATCAAGCTCCTGATATGGCAGCACGCCTTCATTCAACTCGTGTTCTTGGAACCTTT 720
Query 826 GGTTACCATGCCCCTGAATATGCAATGACTGGGCAATTGAGTGCCAAGAGTGACGTATAC 885
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 721 GGTTACCATGCCCCTGAATATGCAATGACTGGGCAACTGAGTGCCAAGAGTGATGTATAC 780
Query 886 AGTTTCGGAGTTGTACTGCTCGAGCTTCTTACAGGTCGAAAGCCTGTTGATCATACATTG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGTTTCGGAGTTGTACTGCTCGAGCTTCTTACAGGTCGAAAGCCTGTTGATCATACATTG 840
Query 946 CCTCGAGGCCAGCAAAGTCTAGTCACATGGGCTACACCAAAGCTAAGCGAAGACAAGGTT 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCTCGAGGCCAGCAAAGTCTAGTCACATGGGCTACACCAAAGCTAAGCGAAGACAAGGTT 900
Query 1006 AAGCAGTGTGTTGATTCAAGACTGGGAGGAGATTACCCTCCAAAAGCTGTTGCTAAGTTA 1065
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGCAGTGTGTTGATTCAAGACTCGGAGGAGATTACCCTCCAAAAGCTGTTGCTAAGTTA 960
Query 1066 GCTGCTGTTGCTGCATTGTGTGTACAATACGAAGCTGATTTCAGACCAAACATGAGTATT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCTGCTGTTGCTGCATTGTGTGTACAATACGAAGCTGATTTCAGACCAAACATGAGTATT 1020
Query 1126 GTCGTGAAGGCTCTGCAACCATTGTTGAATGCTCGGACCGGACCTGCAGGAGAAGGAGCA 1185
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1021 GTCGTGAAGGCTCTGCAACCATTGTTGAATGCTCGGTCCGGACCTGCGGGAGAAGGAGCA 1080
Query 1186 CCTTAG 1191
||||||
Sbjct 1081 CCTTAG 1086
> Ahg483882 jgi|Araly1|483882|fgenesh2_kg.4__2942__AT2G47060.2
Length=1278
Score = 928 bits (502), Expect = 0.0
Identities = 809/955 (85%), Gaps = 30/955 (3%)
Strand=Plus/Plus
Query 252 GCAGCCTATAGAAGTAGCTGCTATTCTCGCTGA-TGAACTGATTGAAGCAAC-GAATGAT 309
||||||||| |||||| || ||| || | | | |||||| | |||||||| | |||||
Sbjct 191 GCAGCCTATCGAAGTACCTACTA-TCCCTTTTAGTGAACTCAAGGAAGCAACTG-ATGAT 248
Query 310 TTTGGAACTAATTCTCTTATCGGTGAAGGCTCGTAT-GCGAGAGTGTATCACGGGGTGTT 368
|||||| | |||||||| |||||||||||||| ||| || ||||| ||| |||| || ||
Sbjct 249 TTTGGATCCAATTCTCTCATCGGTGAAGGCTCTTATGGC-AGAGTATATTACGGAGTTTT 307
Query 369 AAAGAATGGTCAGCGTGCAGCCATTAAAAAGTTAGATTCTAACAAACAGCCT-A-A-TGA 425
|| || | || || | | || ||||||||||| |||||||||||||||||| | | ||
Sbjct 308 GAACAACGATCTGCCTTCTGCGATTAAAAAGTTGGATTCTAACAAACAGCCTGACACTG- 366
Query 426 AGAGTTTCTAGCACAGGTTTCCATGGTTTCGAGG-TTGAAGCATGTTAACTTTGTTGAGC 484
| | || || || ||||||||||||||||| ||| || || |||| |||||||||| | |
Sbjct 367 A-A-TTCCTTGCCCAGGTTTCCATGGTTTCTAGGCTT-AAACATGATAACTTTGTTCAAC 423
Query 485 TGCTTGGTTACTCTGTTGATGGGAATTCGA-GGATACTTGTCTTTGAGTTTGCCCAAAAT 543
| ||||| |||| |||||| |||||||| | ||||||||| |||||| |||||| |||||
Sbjct 424 TTCTTGGCTACTGTGTTGACGGGAATTC-ACGGATACTTGCCTTTGAATTTGCCAAAAAT 482
Query 544 GGATCTCTTCATGATATTCTTCACGGGAGAAAAGGTGTGAAGGGAGCAAAGCCTGGTCCA 603
||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||
Sbjct 483 GGATCTCTTCATGATATTCTTCATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCT 542
Query 604 CTCTTGTCGTGGCATCAACGAGTGAAGATTGCTGTTGGAGCAGCAAGAGGGCTTGAGTAT 663
||||||||||| ||||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 543 GTCTTGTCGTGGTATCAACGAGTGAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTAC 602
Query 664 TTACATGAAAAGGCAAATCCACATGTCATCCACCGTGACATAAAATCCAGCAATGTTCTA 723
|| |||||||| || ||||| || |||| ||||||||||| |||||||||||||| |||
Sbjct 603 TTGCATGAAAAAGCTAATCCTCACATCATTCACCGTGACATCAAATCCAGCAATGTCCTA 662
Query 724 ATCTTTGATA-ACGATGTAGCCAAGATAGCTGACTTTGATCTCTCAAATCAAGCTCCTGA 782
||||||| | ||||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 663 CTCTTTGA-AGACGATGTTGCCAAAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGA 721
Query 783 TATGGCAGCACGCCTTCATTCAACTCGTGTTCTTGGAACCTTT-GGTTACCATGCCCCTG 841
||||||||| ||||||||||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 722 TATGGCAGCTCGCCTTCATTCCACCCGTGTTCTTGGAAC-TTTCGGTTACCATGCCCCTG 780
Query 842 AATATGCAATGACTGGGCAATTGAGTGCCAAGAGTGACGTATACAG-TTTCGGAGTTGTA 900
||||||||||||| ||||| || | |||||||||||| || ||||| ||| ||||||||
Sbjct 781 AATATGCAATGACCGGGCAGTTAAATGCCAAGAGTGATGTCTACAGCTTT-GGAGTTGT- 838
Query 901 CTG-CTCGAGCTTCTTACAGGTCGAAAGCCTGTTGATCATACATTGCCTC-GAGGCCAGC 958
|| ||||| ||||||||||||||||| ||||||||||||| ||| || | |||||||||
Sbjct 839 CTTACTCGAACTTCTTACAGGTCGAAAACCTGTTGATCATAGATTACC-CAGAGGCCAGC 897
Query 959 AAAGTCTAGTCACATGGGCTACACC-AAAGCTAAGCGAAGACAAGGTTAAGCAGTGTGTT 1017
||||| ||||||||||||||||||| ||| || ||||||||||||||||| || || |||
Sbjct 898 AAAGTTTAGTCACATGGGCTACACCTAAA-CTGAGCGAAGACAAGGTTAAACAATGCGTT 956
Query 1018 GATTCAAGACTGGGAGGAGATTACCCTCCAAAAGCTGTTGCTAAGTTAGCTGCTGTTGCT 1077
||| ||||||| || || ||||||||||||||||||||||| |||||||| || ||||||
Sbjct 957 GATGCAAGACTCGGTGGGGATTACCCTCCAAAAGCTGTTGCCAAGTTAGCCGCGGTTGCT 1016
Query 1078 GCATTGTGTGTACAATACGAAGCTGATTTCAGACCAAACATGAGTATTGTCGTGAAGGCT 1137
|| |||||||| ||||| ||||| ||||| || || || |||||||| || || || |||
Sbjct 1017 GCGTTGTGTGTGCAATATGAAGCAGATTTTAGGCCGAATATGAGTATCGTTGTCAAAGCT 1076
Query 1138 CTGCAACCATTGTTGAATGCTCG-GACCGGACCTGCAGGAGAAGGAGCACCTTAG 1191
|| ||||| |||||||||||||| | ||| | || |||| |||| || || ||||
Sbjct 1077 CTTCAACCTTTGTTGAATGCTCGAG-CCGTAGCTCCAGGCGAAGAAGTACATTAG 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5