BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62230.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939308 jgi|Araly1|939308|scaffold_503499.1 929 0.0
> Ahg939308 jgi|Araly1|939308|scaffold_503499.1
Length=1437
Score = 929 bits (503), Expect = 0.0
Identities = 1120/1409 (79%), Gaps = 78/1409 (6%)
Strand=Plus/Plus
Query 45 CAAAATCATTAACAATGGACTCAGGAAGTGCA---GTGGACATCATTTCGACGCTT-TCA 100
||||||||| ||||||| | ||| ||| | || || ||||||||||||||| || |||
Sbjct 11 CAAAATCATCAACAATGTATTCAAGAAATCCACCGGTTGACATCATTTCGACG-TTATCA 69
Query 101 GACT-TCCTGCTCGTCCTGATCATTTCGAACCTTTCCTTCAAGGAGGCTTTGAGCACCAG 159
|||| | ||||| || ||||| || || |||| |||||||||| | ||||| |||||
Sbjct 70 GACTGT-CTGCTTGTTCTGATAATATCTTTCCTTCCCTTCAAGGACGTTTTGAAAACCAG 128
Query 160 T-CGCCTTTCCACCCGCTGGAGACACATATGT--CGCGAAACGAGAAACATCTCTTTCAG 216
| | ||||||| |||||| || || | ||| || ||| || |||||||||||||||
Sbjct 129 TATG-CTTTCCAAGCGCTGGCGATAC-T-TGTACCGGGAAGTGAAAAACATCTCTTTCAG 185
Query 217 AGAGGACGAGATCGTGACATTCGCTGATG-ATTCC--GTTGCTC-GCTATTACCAAAGGG 272
|||| ||| || ||||| || |||| | | || ||| || | ||||||||||| |
Sbjct 186 AGAGTCCGAAATGGTGACTTTTGCTG--GCA-ACCATATTGATCAG-TATTACCAAAGAG 241
Query 273 CTGCA-TTAGTTGCCTATATGGTTGGTTGGGTTAACAATTTTACCGGTGGAGTTGTTGAA 331
| || || |||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 242 C-ACAGTTGGTTGCCTATATGGTTGGTTGGGTTGACAATTTTACCGGTGGAGTTATTGAG 300
Query 332 AGCTTCGAGCTTCGTCTCTCTAATTCGTATGCTTTTGAAGAAGGGGTCACCACACTGATC 391
|| ||||||||| ||||||| || |||||| |||| ||| |||| ||||| | |||||||
Sbjct 301 AGTTTCGAGCTTTGTCTCTCGAACTCGTATTCTTTCGAACAAGGTGTCACAAGACTGATC 360
Query 392 GAATTCGCTGTCTCCAAGAATGTCAAGCATCTTTTTCTTGACCTCTCAGAACCTCGTTGG 451
|||||||| |||||||||||||||||||||||| ||||||| |||||||| | ||| | |
Sbjct 361 GAATTCGCAGTCTCCAAGAATGTCAAGCATCTTATTCTTGATCTCTCAGAGCGTCGCT-G 419
Query 452 GTTA-CCAATA-ACGACGCTGCA-CAATTAGAACCGGGTTTGA-TCAAATTACCGGAGAG 507
| | | | | | || || ||| | |||||||| |||||||| |||| || ||||| ||
Sbjct 420 GAGAGTC-AGAGATGATGCAGCAGC-ATTAGAACGGGGTTTGATTCAAGTT-CCGGAAAG 476
Query 508 TTTTTACAAGA-TTACCAGTCTCGTGACGTTGAAGTTATTCGGTTGCCGGTTTGAA-CCA 565
||||||||| | |||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 477 TTTTTACAA-ACTTACCACTCTCGTGACGTTGAAGTTATTCGGTTGCCGGTTT-AATCCA 534
Query 566 TCGAGGCTCGCGAAACCGGGTATGGTGAAAA-CCATGTT-CTTCCGCTGGATCCGTCTCG 623
|| ||||| ||||| |||||| |||| |||| || | || ||| || |||||||||||||
Sbjct 535 TCAAGGCTTGCGAACCCGGGTTTGGTTAAAATCC-T-TTGCTTTCGTTGGATCCGTCTCG 592
Query 624 AGA-TGTTATCGGCTTTGATAGCAAAGACACC-TCTTCTCGAGATCTT-GAACATCAAAA 680
||| | | |||||||||||||| ||| |||| | ||||||||| ||| || ||| || |
Sbjct 593 AGAATATC-TCGGCTTTGATAGCGAAGGCACCAT-TTCTCGAGA-CTTTGATCATGAAGA 649
Query 681 ACTGTTGGGAGATTGGTCTTGATGCGATAACCGGATATAACGACCGGTTAATGAAG-TTG 739
| ||||||||| | |||||||| || |||||||||| |||||||||| ||| |||| |||
Sbjct 650 ATTGTTGGGAGGTCGGTCTTGAAGCAATAACCGGATTTAACGACCGGGTAAGGAAGGTTG 709
Query 740 GT-TTTCAAGTATTGT-TCCTTCTCCGCGCAGCAAACC-ACACTGGACGTGCCCAATATT 796
| ||| ||| | ||| | ||||| | | || ||| | ||||| ||||| ||||| |||
Sbjct 710 -TATTT-AAGAACTGTGTG-TTCTCGGTGGAG-AAATCTACACTCGACGTTCCCAACATT 765
Query 797 CAGATCTTCAAGTACTTTGGGAAAGT-CTATCGCTTTGAGTTCGCGAGTGCGAACAAGTT 855
|||||||||||||||||||| ||||| | ||| ||||||| ||| ||||| || | |
Sbjct 766 CAGATCTTCAAGTACTTTGGAAAAGTTC-ATCACTTTGAGCTCGTGAGTGTGATTAGGGG 824
Query 856 AATGGAGGAGGCATATCTGGACTACCGTGAAGAGAGCCGT-TACAACG-TGAGTGCAGGA 913
|||||| || || ||||| || | |||||| || | | ||||| | | ||| |||||
Sbjct 825 AATGGAAGAAGCTTATCTTGATTTTGGTGAAGCGATC-GACTACAATGGT-AGTACAGGA 882
Query 914 GCAATAATCAGTGGATT-TC-TCTA-CAGTATGTTG-TCTGCTAAGACATTCACAATCTG 969
| || | ||| | | || |||| || | | | || |||| ||||||||| || ||
Sbjct 883 TCCC-AA-CTGTGTAATCTCCTCTATCA-TCTCC-GATCCGCTAGGACATTCACGATTTG 938
Query 970 TCCGTATGTCCTTCAATTGATCCAAGAGTGTGAAGACCCGGTGCGACTGAAAGCACCGAT 1029
||| ||| | || ||| ||||||| ||| ||||||| |||| ||||||||| || |||
Sbjct 939 TCCATATCTTCTCCAACTGATCCAGGAGAGTGAAGATTCGGTTAGACTGAAAGAACGGAT 998
Query 1030 GGAGACAAGACAGTTGGTTCTGAAGACAAATTTTGAACCTAATGAGTTTGTTGGAATCAG 1089
|||||||||||||||||| |||||| | | | ||||| |||||||| |||||||| |
Sbjct 999 GGAGACAAGACAGTTGGTACTGAAGTCTGCTCTGGAACCGAATGAGTTCATTGGAATCCG 1058
Query 1090 ATTCATGCTTAACAGTTCTCCGTATCTGGAGACACTCTCATTCCAGATGGTGGGTCCTCG 1149
||||||| | ||||| | ||| ||| |||||| || ||||| ||||| |||| |||| |
Sbjct 1059 ATTCATGATCAACAGCTGTCCATATTTGGAGATTCTGTCATTTCAGATAGTGGATCCTAG 1118
Query 1150 GCCCATCGA-AGAGATGGTGCCTCAGATCGATCCAGAGGCTTATTGGGGGCAGAATACCA 1208
|| || || | |||||| |||||| |||||||||||||||||||| | | || | ||
Sbjct 1119 GCTTATTGATAT-GATGGTTCCTCAGTTCGATCCAGAGGCTTATTGGATGAATAACATCA 1177
Query 1209 GTCATGAA-TGTTTGAAGAAAACACTTAAGAAAGTGGAGGTGTGGAGCTTTTA-TGGTGG 1266
||||| || ||| |||||| ||||||||||||||||| || ||||||||| | ||| ||
Sbjct 1178 GTCAT-AAGTGTCTGAAGAGGACACTTAAGAAAGTGGAAGTCTGGAGCTTT-AGTGGGGG 1235
Query 1267 TACGCACGAGTTACGTGTTCTCGAGTATCTGATTCGTTATGGTCGTATGTTGGAGAGGGT 1326
|||| ||||||||| ||| ||| ||||||||||||| ||||||||| |||||||||| ||
Sbjct 1236 TACGTACGAGTTACATGTCCTCAAGTATCTGATTCGCTATGGTCGTGTGTTGGAGAGAGT 1295
Query 1327 GGATCTGTATCAGCCAATTGGATTGGATGAT-ATTCAACTGCTTCCGATACGTGCTGCAG 1385
||||||||||| ||||||||||||| |||| || ||| ||||| || |||||||||||
Sbjct 1296 GGATCTGTATCTGCCAATTGGATTGAATGAGGAT-CAAATGCTTACGGCACGTGCTGCAG 1354
Query 1386 CTGATAGGGTGGGA---GAGTTCGAGGCT 1411
|||| | |||||| ||||| ||||||
Sbjct 1355 CTGACACTGTGGGAACAGAGTTTGAGGCT 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5