BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62240.1
Length=2701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939309 jgi|Araly1|939309|scaffold_503500.1 3864 0.0
Ahg322358 jgi|Araly1|322358|fgenesh1_pm.C_scaffold_4002415 222 9e-57
> Ahg939309 jgi|Araly1|939309|scaffold_503500.1
Length=2478
Score = 3864 bits (2092), Expect = 0.0
Identities = 2346/2470 (95%), Gaps = 11/2470 (0%)
Strand=Plus/Plus
Query 96 CAAATTCAGGAAGAGACATGGATGATAGCTGTGCCGTCTGCGCTGACAATCTCGAATGGG 155
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CAAATTCAAGAAGAGACATGGATGATAGCTGTGCCGTCTGCGCTGACAATCTCGAATGGG 63
Query 156 TTGCCTATGGATCTTGTGGTCACCGAGAGGTTTGCTCCACATGCGTCGTTCGTCTCCGAT 215
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 64 TTGCCTATGGATCTTGTGGTCACCGTGAGGTTTGCTCCACTTGCGTCGTTCGTCTCCGAT 123
Query 216 TCGTCCTCGACGATCCTCGCTGCTGTATCTGCAAGACCGAGTCTCCTATCGTTTTTGTCA 275
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 124 TCGTCCTCGACGATCCTCGCTGCTGTATTTGCAAGACCGAGTCTCCTATCGTTTTTGTCA 183
Query 276 CCAAGGCATTGGGTGATTATACAAGGACGATCAATGATTTCTCCACCTTCCCATCAGCAC 335
|||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 184 CCAAGGCATTGGGTGATTATACGAGGACGATCACTGACTTCTCCACCTTCCCATCAGCAC 243
Query 336 CAAGGGAAGGTCGAGTAGGAGCTTTCTGGTATCATGAAGACACTCAGGCTTTCTTTGATG 395
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CAAGGGAAGGGCGAGTAGGAGCTTTCTGGTATCATGAAGACACTCAGGCTTTCTTTGATG 303
Query 396 ACTTGGATCAGTACAGGATGATCAAAGCTATGTGTAGACTTTCTTGCGGTGTTTGTGATA 455
|||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 304 ACTTGGATCATTACAGGATGATCAAAGCTATGTGTAGACTCTCCTGCGGTGTTTGTGACA 363
Query 456 AGACGGAAGATAAACCTAGAGAAGGAGGACCAAGACATCATCGTCAGCGGATTAAGAGCG 515
|| |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 364 AGGCGGAAGATCAACCTAGAGAAGGAGGACCAAGACATCATCGGCAGAGGATTAAGAGCG 423
Query 516 TCGAACAGTTGAAGGGTCATTTATATCATAAGCACAAATTGCATATGTGTGGTTTATGTC 575
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TTGAACAGTTGAAGGGTCATTTATATCATAAGCACAAATTGCATATGTGTGGTTTATGTC 483
Query 576 TAGAAGGGCGAAAGATATTCATATGTGAACAAAAGTTGTATACTAGGGCACAACTGAACC 635
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TCGAAGGGCGAAAGATATTCATATGTGAACAAAAGTTGTATACTAGGGCACAACTGAACC 543
Query 636 AACACATACAGACTGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGGGGAGGCTTCG 695
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 544 AACACATACACACTGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGGGGTGGCTTCG 603
Query 696 CAGGACATCCTATGTGTGAATTCTGTAGGAATCCTTTCTATGGTGATAATGAATTGTATA 755
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CTGGACATCCTATGTGTGAATTCTGTAGGAATCCTTTCTATGGTGATAATGAATTGTATA 663
Query 756 CTCACATGTCTACAGAGCATTACACCTGTCATCTATGCCAAAGGTCACAGCCAGGGCAAT 815
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 664 CTCACATGTCTACAGAGCATTACACATGTCATTTATGCCAAAGGTCACAGCCAGGACAAT 723
Query 816 ATGAATATTACAAAAACTATGATGACTTAGAGATTCATTTCCGTAGAGACCATTTCCTCT 875
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 724 ATGAATATTACAAAAACTATGATGACTTGGAGATTCATTTCCGTAGAGACCATTTCCTCT 783
Query 876 GTGAAGACGACTCCTGCCTTGCTAAGAAGTTCACAGTTTTCCAGAATGAATCAGAGTTGA 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GTGAAGACGACTCCTGCCTTGCTAAGAAGTTCACAGTTTTCCAGAATGAATCAGAGTTGA 843
Query 936 AAAGGCATAACGCTATTGAGCATGGAGGTAAAATGTCTCGGTCTCAGCGAAGTGCTGCAT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AAAGGCATAACGCTATTGAGCATGGAGGTAAAATGTCTCGGTCTCAGCGAAGTGCTGCAT 903
Query 996 TACAGATACCGACAAGTTTCCGATACAGTCGTGGAAATGATCAAGAGAATCGTCGAGGAA 1055
|||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 904 TACAGATACCAACAAGTTTCCGATACCGACGTGGAAATGATCAAGAGAATCGTCGTGGAA 963
Query 1056 GACCCCGATCATTTCGTCGCGAGCCTGGTGATGAAGAATATAATCTTGCAGTTCATGCCG 1115
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 964 GACCCCGATCATTTCGTCGCGAGCCTGGTGATGATGAATATAATCTTGCAGTTCATGCGG 1023
Query 1116 CTCTTCGTTTATCTGAGTCTGAGTATTCTCGGCAAGAGCCTGCTCCTCCACCCTCAAGTG 1175
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CTCTTCGTTTATCTGAGGCTGAGTATTCTCGGCAAGAGCCTGCTCCTCCACCCTCAAGTG 1083
Query 1176 CACCACCCGGATTCTCTGAAAACAACAACATACACGTGGATGATACTGATCCCCTTATTC 1235
||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1084 CACCACCTGGATTCTCTGAAAACAACAACATACACGTGGATGATGCTGATCTTCTTCTTC 1143
Query 1236 AGCCAATGGAATCTCTATCAACTACAGATATGGAACCCTCTTCACGGTATCTTCAAGCTG 1295
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1144 AGCCAATGGAATCTCTATCAACTACAGATATGGAACCCTCTTCACGATATCTTCAAGCCG 1203
Query 1296 TAGGAAGCTTTGGTGGTGGTGGTTCACGTCTTGGAGAATCTGCTTTTCCTCCTCTTTCTG 1355
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1204 TAGGAAGCTCTGGTGGTGGTGGTACACGTCTTGGAGAATCTGCTTTTCCTCCTCTTTCTG 1263
Query 1356 GGCAACAGAGTTCTGGACAGAACGTAGAGAGTTTACCAACTAACACCATGGCTGCTCGTC 1415
| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1264 GTCAACCGAGATCTGGACAGAACGTAGAGAGTTTACCTACTAACACCATGGCTGCTCGTC 1323
Query 1416 TAAGACGCCAAACAAATCGAACTTCTACTGCTTCCGCTATTGCTAGTCCTTCTCAAGGAT 1475
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1324 TAAGACGCCAAACAAATCGAACTACTACTGCTTCTGCTATTGCTAGTCCTTCTCAAGGAT 1383
Query 1476 GGCCAGTGATTAATCGAGGCCCAG-GACAAGCATCTATTACAAGTGGAGGTAATCATTCT 1534
|||||||| |||| |||||||||| | ||||||||||| |||||||| ||||||||||||
Sbjct 1384 GGCCAGTGGTTAACCGAGGCCCAGCG-CAAGCATCTATAACAAGTGGCGGTAATCATTCT 1442
Query 1535 TCTTCAGGATGGCCAGCTATAGGTCGAACGCCTGTACAAGCCTCTAGTTCTTCAGTCCAA 1594
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TCTTCGGGATGGCCAGCAATAGGTCGAACGCCTGTACAAGCCTCTAGTTCTTCAGTCCAA 1502
Query 1595 TCTAGGTCCCATAACAGAGTTTCACAACCTCGACCTCTGGCTTCTGCAGTTCCACAGGCT 1654
|||| |||||||| |||||| ||||| ||||||| |||||| || ||||| ||||||||
Sbjct 1503 TCTATGTCCCATAGCAGAGTATCACAGGCTCGACCGCTGGCTCCTACAGTTTCACAGGCT 1562
Query 1655 GCTCGTAATGCAAATAGGATTCCTCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGA 1714
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 GCTCGTAATGCGAACAGGATTCCTCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGA 1622
Query 1715 TCACTTCAGCCTTCTCATTCAGATTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGT 1774
|||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1623 TCACATCAGCCTTTTCATTCAGAGTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGT 1682
Query 1775 AAAACATCATCAACCACTACACAGGGATCGTCAAACACTCAACCCCCTCCAGATGTACAA 1834
|| |||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 1683 AAGACATCATCCACCACTACACATGGATCATCAAACACTCAACCCCCTCCTGATGTTCAA 1742
Query 1835 TCTGCCAACAAGTCATTGATTGAGAAAATGCGATCTGCACTTGGTCATGATGAAGATGTA 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 TCTGCCAACAAGTCATTGATTGAGAAAATGCGATCTGCACTTGGTCATGATGAAGATGTA 1802
Query 1895 TTCGTGGCCTTCAGGAATATATCAGGACAGTATCGTCAAGGTTCCATTGATGCAAAGACT 1954
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1803 TTTGTGGCATTCAGGAATATATCAGGACAGTATCGTCAAGGTTCGATTGATGCAAAGACT 1862
Query 1955 TATTTGGAGTATGTGCAAGGTTATGGATTGTCTCACTTGGTTATTGATCTTGCTAGACTG 2014
|||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1863 TATTTGGAATATGTGAAAGGATATGGATTGTCTCACTTGGTTATTGATCTTGCTAGACTG 1922
Query 2015 TGTCCTGACCCTAAGAGGCAGAAGGAACTCATTGATACCCATAATGCCAGTTTGAGAGAA 2074
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1923 TGTCCTGACCCTAAAAGGCAGAAGGAACTCATTGATACCCATAATACCAGTTTGAGAGAA 1982
Query 2075 GAGGATTCAAAGGATAATGGTCGGAG-TGCTGCGCAGAGCTCTTCTCAGCCTAAAGAGAG 2133
|| ||||||||||| ||||||||| | |||||| |||||||||||||| |||||||| ||
Sbjct 1983 GAAGATTCAAAGGAGAATGGTCGG-GCTGCTGCCCAGAGCTCTTCTCAACCTAAAGATAG 2041
Query 2134 TCAAAGTTCAAAGAAAAACAAAGGAAAAGCTGTGAAAGTTGTTGACCCTAAAGAAACACT 2193
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2042 TCAAAGTTCAAAGAAAAACAAAGGAAAAGCTGTGAAAGTTGTTGACCCGAAAGAAACATT 2101
Query 2194 AGCAGATAACTTTATGGACACAGTAAGGAGATTACAATCTTCTCAGAATCCACAGGAAGA 2253
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2102 AGCAGATAACTTTATGGACACAGTAAGGAGATTACAATCTTCTCAGAATCCCCAGGAAGA 2161
Query 2254 AGAAGAGGAGGCGATATCAAAGGATAAGAATACCTATAGATCAGACAAAGGCAAATCACA 2313
|||||||| | ||||| |||||||||||| | ||||| ||||||||||| ||||||||
Sbjct 2162 AGAAGAGGTG---ATATCTAAGGATAAGAATTCTTATAGGTCAGACAAAGGTAAATCACA 2218
Query 2314 AGTAGTAGGAACGGATTCTTCTTCCACAGGAAGCAAACAGCAACGTAAGAAAACTTCTAA 2373
|||| |||||| ||||||||||| || |||| ||| |||||||||||||||||||||||
Sbjct 2219 AGTAACAGGAACTGATTCTTCTTCAACCGGAAACAAGCAGCAACGTAAGAAAACTTCTAA 2278
Query 2374 GTTTCACAGAGTACGGCTTGGAGATGGATCAATGGCTGCCTTGCTGGATCTTAACAATTC 2433
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 2279 GTTTCACAGAGTACGGCTTGGTGATGGATCAATGGCTGCCTTACTAGATCTTAACAATTC 2338
Query 2434 TA-CTCGCGAGTCTGAACAAGAATCTAAGGATAGTAATTCCAACAGTAACCAAAATCAGA 2492
|| | || ||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 2339 TAAC-CGTGAGTCTGAACAAGAATCAAAGGATGGTAATTCCAACAGTAACCAAAATCAGA 2397
Query 2493 CCGGTGGTTTACCGGTTCGTGGGGTTTGGCGTAAAGGAGGTGCTAACCTTTTCTCGTAAA 2552
||||||||||||||||| | || |||||||||||||||||||| |||||||||||||| |
Sbjct 2398 CCGGTGGTTTACCGGTTGGAGGCGTTTGGCGTAAAGGAGGTGCAAACCTTTTCTCGTAGA 2457
Query 2553 GAACT-AATt 2561
|| || ||||
Sbjct 2458 GA-CTTAATT 2466
> Ahg322358 jgi|Araly1|322358|fgenesh1_pm.C_scaffold_4002415
Length=2208
Score = 222 bits (120), Expect = 9e-57
Identities = 317/408 (78%), Gaps = 29/408 (7%)
Strand=Plus/Plus
Query 1678 TCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGATCACT---TCAGCCTTCTCATTC 1734
|||||| || ||| ||||||| | ||||| ||||||||||| ||||||||||||||
Sbjct 1401 TCACTCGTCTTCAACCCCTAAAATGTCTGAAACAAGATCACTGGAGCAGCCTTCTCATTC 1460
Query 1735 AGATTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGTAAAACATCATCAACCACTAC 1794
|||| ||||||| |||| | || |||| ||||||| | ||||||| |||| | |
Sbjct 1461 TGATTCTCCTCCAATTTC--C-GC---TGTGAAAAATCGCAGGTCATCATCCACCAGTGC 1514
Query 1795 -A---CAGGGATCGT-CAAACA-CTCAACCCCCTCCAGATGTACAATCTG-CCA-ACAAG 1846
| ||| || | | ||| | | ||| | | |||||||| |||| | | | |||
Sbjct 1515 AAGTGCAGCGAACATCCAAGTAGCACAAGGTGTTTCTGATGTACAGTCTGACAATAAAAG 1574
Query 1847 TCATTGATTGAGAAAATGCGAT--CTGCACTTGGTCATGATGAAGATG-TATTCGTGGCC 1903
| ||| |||| ||||| | || | || ||||| || |||||||| | ||||| |||||
Sbjct 1575 T--TTGGTTGAAAAAATAC-ATGCCAGC-CTTGGACACGATGAAGA-GTTATTCATGGCC 1629
Query 1904 TTCAGGAATATATCAGGACAGTATCGTCAAGGTTCCATTGATGCAAAG-ACTTATTTGGA 1962
|||| ||||| ||| ||| |||||||||| |||||||| ||||| ||| ||||| |||||
Sbjct 1630 TTCAAGAATACATCTGGAAAGTATCGTCATGGTTCCATCGATGC-AAGAACTTACTTGGA 1688
Query 1963 GTATGTGCAAGGTTATGGATTGTCTCACTTGGTTATTGATC-TTGCTAGACTGTGTCCTG 2021
|||||| |||||||||| ||||||||||| ||| | || | | |||||||| || ||||
Sbjct 1689 ATATGTGAAAGGTTATGGTTTGTCTCACTTAGTTCTAGA-CATGGCTAGACTCTGCCCTG 1747
Query 2022 ACCCTAAGAGGCAGAAGGAACTCATTGATACCCATAATGCCAGTTTGA 2069
||||| |||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1748 ACCCTCAGAGGCAGAAGGAACTCATTGATACCCACAATGCCTGCTTGA 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101891405375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5