BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62250.1
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486730 jgi|Araly1|486730|fgenesh2_kg.5__2722__AT3G62250.1 965 0.0
Ahg935699 jgi|Araly1|935699|scaffold_403687.1 649 0.0
Ahg472603 jgi|Araly1|472603|fgenesh2_kg.1__2557__AT1G23410.1 442 2e-123
> Ahg486730 jgi|Araly1|486730|fgenesh2_kg.5__2722__AT3G62250.1
Length=650
Score = 965 bits (522), Expect = 0.0
Identities = 610/650 (94%), Gaps = 15/650 (2%)
Strand=Plus/Plus
Query 1 AAAATCCCCATTTTGATAATCTTCAG--CAGCCGTTGCCTCAAAAGATGCAGATCTTCGT 58
||||||||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 1 AAAATCCCCATTTTGAT-CT-TTTAGTCCAGCCGTTGCCTCAAAAGATGCAGATCTTCGT 58
Query 59 GAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTTGAATCATCCGACACCATCGACAA 118
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 59 GAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCGTCCGATACCATCGACAA 118
Query 119 TGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGATTGATTTT 178
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGATTGATTTT 178
Query 179 CGCCGGGAAACAGCTTGAAGACGGCCGTACCCTCGCCGACTACAACATCCAGAAGGAATC 238
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 CGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTACAACATCCAGAAGGAGTC 238
Query 239 GACGCTTCATCTCGTCCTCCGTCTCCGTGGTGGTGCTaagaagaggaagaagaagactta 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GACGCTTCATCTGGTCCTCCGTCTCCGTGGTGGTGCTAAGAAGAGGAAGAAGAAGACTTA 298
Query 299 caccaagccgaagaagatcaagcacaagcataagaagGTTAAGCTCGCTGTTCTTCAGTT 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 CACCAAGCCGAAGAAGATCAAGCATAAGCATAAGAAGGTTAAGCTCGCTGTTCTTCAGTT 358
Query 359 TTACAAAATCGATGGATCTGGAAAGGTTCAGCGTTTGAGGAAGGAGTGCCCTAACGCAAC 418
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 359 TTACAAAATCGATGGATCTGGAAAAGTTCAGCGTCTGAGGAAAGAGTGCCCTAACGCAAC 418
Query 419 CTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGCCATTACTGTGGTAAGTGTGG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGCCATTACTGTGGTAAGTGTGG 478
Query 479 ACTCACCTACGTTTACCAGAAAGAAGGAGTTGAAGCTTGATCTGTTGT---A-GCGGTAG 534
||||||||||||||||||||||||||||| ||| | ||||||||| | | |||||||
Sbjct 479 ACTCACCTACGTTTACCAGAAAGAAGGAGGTGACGAATGATCTGTTCTTGCAAGCGGTAG 538
Query 535 ATCGATCCTTCTCTTTCTCTCTTATCTTTTAAAAACTGCATTTCTATTTGGGAATTTTGT 594
||| ||| || | || ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 539 ATCTATC-TT-T-TT-CTCTCTTATCTTTAAAAAACTGCATTTCTATTTGGGAAATTTGT 594
Query 595 AAGCTCTTTAATTTGAGTTATCATGGATTCTATGTTGAACATCTTTCGTT 644
||||| ||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 595 AAGCTTTTTT-TTTG--TTATCATGGATCCTATGTTGAACATCTTTCGTT 641
> Ahg935699 jgi|Araly1|935699|scaffold_403687.1
Length=525
Score = 649 bits (351), Expect = 0.0
Identities = 430/469 (92%), Gaps = 2/469 (0%)
Strand=Plus/Plus
Query 40 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTTGAAT 99
|||||||||||||||||||||||||||||||||||||||| || || |||||||| || |
Sbjct 16 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTGAGGTCGAGT 75
Query 100 CATCCGACACCATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 159
| || ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 76 CCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCGG 135
Query 160 ACCAGCAGCGATTGATTTTCGCCGGGAAA-CAGCTTGAAGACGGCCGTACCCTCGCCGAC 218
||||||||||||||||||||||||| ||| ||||| |||||||| |||||| | |||||
Sbjct 136 ACCAGCAGCGATTGATTTTCGCCGG-AAAGCAGCTCGAAGACGGACGTACCTTAGCCGAT 194
Query 219 TACAACATCCAGAAGGAATCGACGCTTCATCTCGTCCTCCGTCTCCGTGGTGGTGCTaag 278
|||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||
Sbjct 195 TACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGTGGTGCTAAG 254
Query 279 aagaggaagaagaagacttacaccaagccgaagaagatcaagcacaagcataagaagGTT 338
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 255 AAGAGGAAGAAGAAGACCTACACCAAGCCGAAGAAGATCAAGCACAAGCACAAGAAGGTC 314
Query 339 AAGCTCGCTGTTCTTCAGTTTTACAAAATCGATGGATCTGGAAAGGTTCAGCGTTTGAGG 398
|||||||||||||||||||| ||||| | ||||| ||||| |||||||||||| |||||
Sbjct 315 AAGCTCGCTGTTCTTCAGTTCTACAAGGTTGATGGCTCTGGTAAGGTTCAGCGTCTGAGG 374
Query 399 AAGGAGTGCCCTAACGCAACCTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGC 458
||||||||||||||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct 375 AAGGAGTGCCCTAACGCTACCTGTGGTGCTGGGACTTTCATGGCTAGCCATTTCGATCGT 434
Query 459 CATTACTGTGGTAAGTGTGGACTCACCTACGTTTACCAGAAAGAAGGAG 507
|| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 435 CACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAG 483
> Ahg472603 jgi|Araly1|472603|fgenesh2_kg.1__2557__AT1G23410.1
Length=590
Score = 442 bits (239), Expect = 2e-123
Identities = 385/455 (85%), Gaps = 11/455 (2%)
Strand=Plus/Plus
Query 41 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTT-GAGGTTGAAT 99
||| ||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 8 AAA-ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACC-TTAGAGGTTGAAT 65
Query 100 CATCCGACACCATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 159
|||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 66 CATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGG 125
Query 160 ACCAGCAGCGATTGATTTTCGCCGGGAAACAGCTTG-AAGACGGCCGTACCCTCGCCGAC 218
| ||||| || ||||| |||||||| ||||| ||| ||||||| | || ||||| ||
Sbjct 126 ATCAGCAACGGTTGATCTTCGCCGGAAAACAA-TTGGAAGACGGAAGAACACTCGCTGAT 184
Query 219 TACAACATCCAGAAGGAATCGACGCTTCATCTCGTCCTCCGTCTCCGTGGTGGTGCTaag 278
|||||||||||||| ||||||||||||||| | || || ||||| | || ||||| |||
Sbjct 185 TACAACATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGGTGCGAAG 244
Query 279 aagaggaagaagaagacttacaccaagccgaagaagatcaagcacaagcataagaagGTT 338
||||||||||||||||| ||||| || || |||||||| ||||| ||||||||||| ||
Sbjct 245 AAGAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATAAGCATAAGAAAGTG 304
Query 339 AAGCTCGCTGTTCTT-CAGTTTTACAAAATCGATGGATCTGGAAAGGTTCAGCGTTTGAG 397
||||| || ||| || ||||||||||| | |||||| |||||| |||||| | |||||
Sbjct 305 AAGCTAGCGGTT-TTGCAGTTTTACAAGGTTGATGGAAGTGGAAAAGTTCAGAGGTTGAG 363
Query 398 GAAGGAGTGCCCTAAC-GCAACCTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATC 456
||| ||||| ||| | || | |||||| |||| ||||||||||||||||||||||||
Sbjct 364 GAAAGAGTGTCCTT-CTGCTAGTTGTGGACCTGGAACTTTCATGGCGAGTCATTTTGATA 422
Query 457 GCCATTACTGTGGTAAGTGTGGA-CTCACCTACGT 490
| ||||| ||||| || |||||| || || |||||
Sbjct 423 GGCATTATTGTGGGAAATGTGGAACT-ACTTACGT 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25885460643
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5