BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62260.2
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486731 jgi|Araly1|486731|fgenesh2_kg.5__2723__AT3G62260.2 2036 0.0
> Ahg486731 jgi|Araly1|486731|fgenesh2_kg.5__2723__AT3G62260.2
Length=1365
Score = 2036 bits (1102), Expect = 0.0
Identities = 1264/1342 (94%), Gaps = 12/1342 (1%)
Strand=Plus/Plus
Query 1 CGAGAGGAATAAATTCACACGCGAACTTCGATAGTTGTTAATTTTCGTTGAACACAAGTG 60
||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1 CGAGAGGAATAAAATCACACGCGAACTTCGATAATTGTCAATTTTCGTTGAACACAAGTG 60
Query 61 ACGAATTTGAGAGAGaaaaaaaaaGAAAATCAGAGATAAAGAATTTGAGTTTCTTGGAAT 120
||||||||||||||| | || ||||||||||||||||||||||||||||| |||||
Sbjct 61 ACGAATTTGAGAGAG-----AGAA-AAAATCAGAGATAAAGAATTTGAGTTTCTGGGAAT 114
Query 121 TAAAGGATCGA--TT-TTGT--TG-AAGTGAAATTGAAATTGATTGTGAAAAGAGAAAGA 174
|||| |||||| || |||| || || |||||||||||||||||||||| ||||| |||
Sbjct 115 TAAAAGATCGATTTTGTTGTAGTGAAATTGAAATTGAAATTGATTGTGAAGAGAGAGAGA 174
Query 175 GACTGATGGTAGCAGAAGCAGAGGTTGTGTTTCAACAGAGTTTACCGGCGGTTCTGGAGA 234
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 175 GACAGATGGTAGCAGAAGCAGAGGTTGTGTTTCAACAGAGTTTGCCGGCGGTTCTGGAGA 234
Query 235 TTGAGTTGTTTGACGGAGTTTCCTCCGCCGTTAAATCTCCCGTTTCTTCTCCGAAATTGG 294
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 235 TTGAGTTGTTTGATGGAGTTTCTTCCGCCGTTAAATCTCCCGTTTCTTCTCCCAAATTGG 294
Query 295 GTTTTACTCAGTCAACGGCGTCGGTTTCCGGAAGTTTAACGACTTCTCCTGTGCAGGCTG 354
||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 295 GTTTTTGTCAGTCAACGGCGTCGGTTTCCAGCAGTTTAACGACTTCTCCTGTGCAGGCTG 354
Query 355 ATATCTTTCCAGAGGGTGATTGCGATCCTAGTGTCTTGGATTATATTCCGACCATCCGGT 414
|||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 355 ATATCTTTCCAGAGGGTGATTGCGATCCCAGTGTCTCGGATTATGTTCCGACCATCCGGT 414
Query 415 CTGGAAGCTTTGCTGATATTGGGCCAAAGAGAAACATGGAAGATGAACACATTCGCATAG 474
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 CTGGAAGCTTCGCTGATATTGGTCCAAAGAGAAACATGGAAGATGAACACATTCGCATAG 474
Query 475 ACGATTTATCTTCTCAAGTTGGTTCCCTTTTTGAGTTGCCGAAGCCTAGTGCTTTCTATG 534
||||| ||||||||||||||||||| || ||||||||||| ||||| |||||||||||||
Sbjct 475 ACGATCTATCTTCTCAAGTTGGTTCTCTCTTTGAGTTGCCAAAGCCAAGTGCTTTCTATG 534
Query 535 CGGTTTTTGACGGGCATGGAGGACCAGAAGCAGCAGCATACGTACGGGAAAATGCCATTA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CGGTTTTTGACGGGCATGGAGGACCAGAAGCAGCAGCATACGTACGGGAAAATGCCATTA 594
Query 595 GGTTTTTCTTTGAAGATGAGCAGTTTCCACAGACATCGGAAGTGAGTAGTGTTTATGTGG 654
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 595 GGTTTTTCTTTGAAGATGAGCAGTTTCCACAAACATCGCAAGTGAGTAGTGTTTATGTGG 654
Query 655 AAGAAGTTGAGACTTCATTGAGAAATGCGTTTCTTCAAGCTGATCTAGCTTTGGCAGAGG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AAGAAGTTGAGACTTCATTGAGAAATGCGTTTCTTCAAGCTGATCTAGCTTTGGCAGAGG 714
Query 715 ATTGCAGTATCAGCGATTCTTGTGGTACCACCGCTCTGACTGCTCTTATTTGTGGAAGAC 774
|||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 715 ATTGCAGTATCAGCTCTTCTTGTGGAACCACTGCTCTTACTGCTCTTATTTGTGGAAGTC 774
Query 775 TCTTAATGGTTGCAAATGCCGGAGACTGCAGAGCGGTTCTATGCAGGAAAGGCAGAGCGA 834
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 775 TCTTAATGGTTGCAAATGCCGGAGACTGCAGAGCGGTTTTATGCAGGAAAGGCAAAGCGA 834
Query 835 TAGACATGTCTGAAGACCATAAACCGATTAATCTACTTGAGAGAAGAAGAGTGGAGGAAT 894
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 835 TAGACATGTCTGAAGACCATAAACCGATTAATCTACTCGAGAGAAGAAGAGTGGAAGAAT 894
Query 895 CCGGCGGTTTCATCACTAATGACGGTTACCTAAATGAAGTCCTAGCTGTAACCCGAGCTC 954
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 895 CCGGCGGTTTCATCAATAATGACGGTTACCTAAATGAAGTCCTAGCTGTGACCCGAGCTC 954
Query 955 TGGGCGACTGGGATTTAAAACTGCCACACGGCTCTCAATCTCCACTGATCTCGGAACCAG 1014
| || ||||||||||||||||||||||| |||||||| ||||| || || ||||||||||
Sbjct 955 TCGGTGACTGGGATTTAAAACTGCCACATGGCTCTCAGTCTCCGCTAATTTCGGAACCAG 1014
Query 1015 AAATCAAGCAGATAACTCTAACTGAAGACGATGAGTTTCTTGTGATTGGGTGCGATGGGA 1074
||||||||||||||||| ||| ||||||||||||||| |||||||| || ||||||||||
Sbjct 1015 AAATCAAGCAGATAACTTTAAGTGAAGACGATGAGTTCCTTGTGATCGGATGCGATGGGA 1074
Query 1075 TTTGGGATGTCTTGACGAGCCAAGAAGCGGTTAGCATTGTTAGGCGTGGCTTAAACCGGC 1134
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1075 TTTGGGATGTCTTGACGAGCCAAGAAGCAGTTAGCATTGTTAGACGTGGCTTAAACCGGC 1134
Query 1135 ACAACGATCCAACAAGATGTGCGCGAGAGCTAGTGATGGAGGCTCTGGGGCGGAACTCAT 1194
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 1135 ACAACGATCCAACAAGATGTGCGCGAGAGCTTGTGATGGAGGCTCTGAGCCGGAACTCAT 1194
Query 1195 TTGATAATTTAACTGCGGTGGTGGTATGTTTCATGACAATGGACAGAGGGGACAAGCCGG 1254
||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1195 TTGATAATTTAACCGCGGTGGTGGTATGTTTCATGACAGTGGACAGAGGAGACAAGCCGG 1254
Query 1255 TGGTGCCATTGGAGAAGAGAAGGTGTTTTAGTCTTTCGCCTGAAGCTTTCTGTAGCTTGA 1314
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1255 TGGTGCCATTGGAGAAGAGAAGATGTTTTAGTCTTTCGCCAGAAGCTTTCTGCAGCTTGA 1314
Query 1315 GGAATCTGTTGGATGGCTGAAA 1336
|||| |||||||||||||||||
Sbjct 1315 GGAACCTGTTGGATGGCTGAAA 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5