BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62270.1
Length=2771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486733 jgi|Araly1|486733|fgenesh2_kg.5__2725__AT3G62270.1 4098 0.0
Ahg483891 jgi|Araly1|483891|fgenesh2_kg.4__2951__AT2G47160.1 2224 0.0
> Ahg486733 jgi|Araly1|486733|fgenesh2_kg.5__2725__AT3G62270.1
Length=2654
Score = 4098 bits (2219), Expect = 0.0
Identities = 2505/2637 (95%), Gaps = 44/2637 (2%)
Strand=Plus/Plus
Query 1 ACTCTTCGTCACTTTCTTGTCATCCAAACAA-TACACAGTCCCCTTTTTCTCCATTATTA 59
|||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ACTCTTCGCCACTTTCTTGTCATCCAAACAATTACACAGTTCCCTTTTTCTCCATTATTG 60
Query 60 CTTCTCaaaaaaaaTCATGTAAATTTGTTCCATGAATCATTCCCAATCTTCTTCAACGAG 119
||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||
Sbjct 61 CTTCTCAAAAAAAATCATGTAAATTTGTTTCATGAATCGTTCTCAATTTTCTTCAACGAG 120
Query 120 ATTCATTGTTATTACGAGCTCCTT-AATatttggttttttgcttttagctcttattgtct 178
|||||||||| ||||||||| ||| |||||| |||| ||||||| | | | | | |||
Sbjct 121 ATTCATTGTTGTTACGAGCT-CTTCAATATTGGGTTCTTTGCTTCT-G-T-GT-CT-TCT 174
Query 179 ggatttttgtgcatttttCTTCTATCCCCTAAACTTGTAGTATTGAGAATGTTCTCTAAT 238
| | || | | | |||||| |||||||| | | |||||||||||||||| ||||
Sbjct 175 ---TATCTG-G-A----T-TTCTATACCCTAAAC-T-T-GTATTGAGAATGTTCTGTAAT 221
Query 239 AT-GG-------G-TTTCAAGTAGTCTCC-TTTTCGTGTCTCCCTCATATCGGGTTTAAA 288
|| || | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 222 ATGGGTTTCTTCGATTTCAAGTAGTCTCCTTTTTCGTGTCTCCCTCATATCGGGTTTAAA 281
Query 289 CTCATCTTCTAACTCTTCTTCGCGAGTGTCTAACCAAAGAAGCTCTCCAAGTGTTCGACG 348
|||| ||| || || || |||||| ||||| ||||||| ||||||||||| ||||
Sbjct 282 CTCA---TCT---TC-TC--CGAGAGTGTTTAACCGAAGAAGCCCTCCAAGTGTTTGACG 332
Query 349 ATTTGTCTGATAGA-A-AACGAAAAACAGAGTAACTTAAAAACAGAGTAATTTACAGAGA 406
|||||||||| ||| | || |||||||||| ||||| |||||||||||||||||||| |
Sbjct 333 ATTTGTCTGAGAGAGATAA--AAAAACAGAGGAACTTGAAAACAGAGTAATTTACAGAAA 390
Query 407 GAAGCCACCATGGAAGAGACTTTTGTTCCGTTTGAAGGTATCAAGAATGATCTTAAAGGA 466
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 391 GAAGCCATCATGGAAGAGACTTTTGTTCCGTTTGAAGGTATCAAGAATGATGTTAAAGGA 450
Query 467 AGGTTAATGTGCTACAAACAAGATTGGACCGGAGGAATCAAAGCTGGGTTTAGGATTCTG 526
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 451 AGGTTAATGTGCTATAAACAAGATTGGACCGGAGGAATCAAAGCTGGATTTAGGATTCTA 510
Query 527 GCTCCTACCACATACATATTCTTCGCGTCTGCGATTCCTGTTATTTCATTCGGCGAACAG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GCTCCTACCACATACATATTCTTCGCGTCTGCGATTCCTGTTATTTCATTCGGCGAACAG 570
Query 587 TTGGAACGAAGCACTGATGGAGTTCTTACCGCTGTTCAGACACTGGCCTCTACAGCCATT 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTGGAACGAAGCACTGATGGAGTTCTTACCGCTGTTCAGACACTGGCCTCTACAGCCATC 630
Query 647 TGTGGAATCATTCACTCGATCATCGGAGGCCAGCCTCTGCTTATACTCGGAGTTGCAGAG 706
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 631 TGCGGAATCATTCACTCGATCATCGGAGGCCAGCCTCTGCTTATACTCGGAGTTGCTGAG 690
Query 707 CCAACTGTTATTATGTACACATTCATGTTTAACTTTGCTAAAGGGAGACCTGAACTGGGA 766
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 691 CCAACTGTAATTATGTACACATTCATGTTCAACTTTGCTAAAGGGAGACCTGAACTGGGA 750
Query 767 CGCAATTTATTCTTGGCTTGGTCTGGATGGGTTTGTGTCTGGACTTCGTTGATACTGTTT 826
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 CGCAATTTGTTCTTGGCTTGGTCTGGATGGGTTTGTGTCTGGACTTCGTTGATACTGTTT 810
Query 827 GTGTTGGCTATATGTGGAGCTTGTTCATTTATCAACAGATTCACCAGAGTAGCTGGAGAA 886
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 811 GTGTTGGCTATATGTGGAGCTTGTTCAATTATCAACAGATTCACCAGAGTAGCTGGAGAA 870
Query 887 TTGTTTGGCCTTCTTATAGCTATGCTCTTCATGCAACAAGCCATCAAAGGATTAGTCGAT 946
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TTGTTTGGACTTCTTATAGCTATGCTCTTCATGCAACAAGCCATCAAAGGATTAGTCGAT 930
Query 947 GAATTTCGCGCTCCTGCGAGAGAGGATCTGAAACTTGTGGAGTTTTTACCTTCCTGGAGA 1006
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GAATTTCGAGCTCCTGCGAGAGAGGATCTGAAACTTGTGGAGTTTTTACCTTCCTGGAGA 990
Query 1007 TTTGCAAATGGGATGTTTGCTTTGGTTCTTTCCTTTGGTCTTCTGATAACTGCACTTAGA 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TTTGCAAATGGGATGTTTGCTTTGGTTCTTTCCTTTGGTCTTCTGATAACTGCACTTAGA 1050
Query 1067 AGCAGAAAAGCAAGATCATGGAGATATGGAACAGGCTGGCTTAGAAGTTTAGTAGCTGAC 1126
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1051 AGCAGAAAAGCCAGATCATGGAGATATGGAACAGGCTGGCTTAGAAGTTTAATAGCTGAC 1110
Query 1127 TATGGTGTGCCACTCATGGTTCTGGTGTGGACCGGTGTCTCCTACATCCCAACAGGAGAT 1186
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1111 TATGGTGTGCCACTCATGGTTCTGGTGTGGACCGGTGTCTCGTACATCCCAACAGGAGAT 1170
Query 1187 GTTCCAAAAGGAATTCCTCGGCGACTTTTTAGCCCAAATCCTTGGTCCCCTGGTGCTTAT 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GTTCCAAAAGGAATTCCTCGGCGACTTTTTAGCCCAAATCCTTGGTCCCCTGGTGCTTAT 1230
Query 1247 GAGAATTGGACTGTTGTAAAGGAGATGCTTCAAGTTCCAATTGTCTACATAATTGGAGCA 1306
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1231 GAGAATTGGACTGTCGTAAAGGAGATGCTTCAAGTTCCAATTGTCTACATAATTGGGGCA 1290
Query 1307 TTCATTCCAGCAACAATGATTGCAGTTCTTTACTACTTCGATCATAGTGTAGCATCACAG 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 TTCATTCCAGCAACAATGATTGCAGTTCTTTACTACTTCGATCATAGTGTAGCATCACAG 1350
Query 1367 CTTGCGCAGCAGAAAGAATTCAATTTGAGAAAACCATCTTCTTACCACTATGATCTGCTT 1426
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1351 CTTGCGCAGCAGAAAGAATTTAATTTGAGAAAACCATCTTCTTACCACTATGATCTGCTG 1410
Query 1427 CTTCTTGGATTTCTGACCTTAATGTGTGGTCTACTTGGAATTCCTCCATCAAATGGAGTC 1486
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 CTTCTTGGGTTTCTGACCTTAATGTGTGGTCTACTTGGAATTCCTCCATCAAATGGAGTC 1470
Query 1487 ATCCCTCAATCACCAATGCATACTAAGAGCTTAGCAACACTAAAATATCAGCTGCTTCGG 1546
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1471 ATCCCTCAGTCACCAATGCATACCAAGAGCTTAGCAACACTAAAATATCAGCTGCTTCGG 1530
Query 1547 AACAGACTAGTTGCAACTGCTCGCAAAAGCATCAAGCAGAATGCGAGTCTAGGACAGTTG 1606
|||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 1531 AACAGACTAGTTGCAACTGCACGCAGAAGCATCAAGCAGAATGCGAGTTTAGGACAGTTG 1590
Query 1607 TATGGAAACATGCAAGATGTTTATAATCAAATGCAGACTCCATTAGTCTACCAACAGCCT 1666
||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1591 TATGGAAACATGCAAGATGCTTATAATCAGATGCAGACTCCATTAGTCTACCAGCAGCCT 1650
Query 1667 CAGGGTCTGAAAGAGCTAAGAGAATCAACAATCCAAGCAACAACATTCACAGGAAATCTC 1726
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 CAGGGTCTGAAAGAGCTAAGAGAATCAACAATCCAAGCAACAACATTCACAGGAAATCTT 1710
Query 1727 GATGCTCCAGTTGATGAGACTCTGTTTGATATCGAGAAAGAGATTGATGATTTATTGCCA 1786
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1711 GATGCTCCAGTTGATGAGACTCTGTTTGATATCGAGAAAGAGATCGATGATTTATTGCCA 1770
Query 1787 ATTGAAGTCAAAGAACAGAGAGTAAGCAACTTGCTTCAAGCAGTAATGGTTGGAGGGTGT 1846
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1771 ATTGAAGTCAAAGAACAGAGAGTAAGCAACTTGCTTCAAGCAATAATGGTTGGAGGATGT 1830
Query 1847 GTTGCAGCTATGCCTCTCCTTAAAATGATCCCTACATCAGTCCTTTGGGGCTACTTTGCC 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 GTTGCAGCTATGCCTCTCCTTAAAATGATCCCTACATCAGTCCTTTGGGGCTACTTTGCC 1890
Query 1907 TTCATGGCAATCGAAAGCTTACCCGGAAACCAATTCTGGGAAAGAATCTTACTTCTCTTC 1966
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 TTCATGGCAATTGAGAGCTTACCCGGAAACCAATTCTGGGAAAGAATCTTACTTCTCTTC 1950
Query 1967 ACAGCTCCTAGTCGTCGATTCAAGGTCCTTGAAGATAACCACGCGACATTCGTGGAAACC 2026
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1951 ACAGCCCCAAGTCGTCGATTCAAGGTCCTTGAAGATAACCACGCAACATTCGTGGAAACC 2010
Query 2027 GTTCCATTCAAAACGATCGCAATGTTCACAATTTTCCAAACAACTTATCTCTTAACTTGC 2086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 GTTCCATTCAAAACGATCGCAATGTTCACAATTTTCCAAACAACTTATCTCTTAACTTGC 2070
Query 2087 TTTGGTCTCACGTGGATACCAATCGCTGGAGTTATGTTCCCTCTACTGATCATGTTTCTG 2146
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 2071 TTTGGTCTCACGTGGATCCCAATCGCTGGAGTTATGTTCCCTCTAATGATCATGTTTCTA 2130
Query 2147 ATACCCGTAAGGCAATATATCCTCCCAAGATTCTTCAAAAGTGCTCATCTTCAGGACTTA 2206
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 ATACCCGTAAGGCAATATACCCTCCCAAGATTCTTCAAAAGTGCTCATCTTCAGGACTTA 2190
Query 2207 GACGCAGCAGAGTACGAAGAAGCACCCGCTTTACCGTTCCATCTCGCAGTACCGGAAGCT 2266
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2191 GACGCAGCAGAGTATGAAGAAGCACCCGCTTTACCATTCCATCTCGCAGTACCGGAAGCT 2250
Query 2267 GAGATGGGATCAACTGCTTCGTATCCATGTGATTCTGAGATTCTTGATGAGTTTATTACA 2326
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2251 GAGATGGGATCAACAGCTTCGTATCCATGTGATTCTGAGATTCTTGATGAGTTTATTACA 2310
Query 2327 AGAAGCAGAGGAGAGTTTAGACACACATGTAGTCCTAAAGTTACTAGTTCGACTTCAACA 2386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 AGAAGCAGAGGAGAGTTTAGACACACATGTAGTCCTAAAGTTACTAGTTCGACTTCAACG 2370
Query 2387 CCGGTTTATAATCGGAATCTCTCTCAAGTGTTTAGTCCTAGAGTGATTGATTTAAGAGGT 2446
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 2371 CCGGTTTATAATCGGAATCTGTCTCAAGTGTTTAGTCCTAGAGTGAATGATTTAAGAGGT 2430
Query 2447 GAGATGAGTCCAAGGCTCTCCGGGAAAGGCCAAAATAGTCCAAAGCCGAGTCCTTTAAAC 2506
||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||
Sbjct 2431 GAGATGAGTCCTAGGCTCGCCGGGAAAGGGCAAAGTAGTCCAAAGCCGAGTCCTTTAAAC 2490
Query 2507 CCATCATCATCGTCGAAATGAGTTTACCGATGATGGAGGCTTGATAAAACCGGAGGAGAT 2566
|||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 2491 CCATCATCGTCGTCGAAATGAGTTTACCGATGATGGAGGCTTAATGAAACTGGAGGAGAT 2550
Query 2567 TATGTTTAAAATTAGTTAATTAATTGATGTTGTATCTTATGCATTCTTGAGtttttt 2623
||||||||||||||||| |||||||||| ||| |||| |||| ||||||||||||||
Sbjct 2551 TATGTTTAAAATTAGTTGATTAATTGATCTTGGATCTAATGCTTTCTTGAGTTTTTT 2607
> Ahg483891 jgi|Araly1|483891|fgenesh2_kg.4__2951__AT2G47160.1
Length=2712
Score = 2224 bits (1204), Expect = 0.0
Identities = 1773/2045 (87%), Gaps = 49/2045 (2%)
Strand=Plus/Plus
Query 415 CATGGAAGAGACTTTTGTTCCGTTTGAAGGTATCAAGAATGATCTTAAAGGAAGGTTAAT 474
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||
Sbjct 356 CATGGAAGAGACTTTTGTGCCGTTTGAAGGAATCAAGAATGATCTTAAAGGAAGATTGAT 415
Query 475 GTGCTACAAACAAGATTGGACCGGAGGAATCAAAGCTGGGTTTAGGATTCTGGCTCCTAC 534
|||||| || ||||||||||| || ||| |||| ||||| ||||||||||||||||| ||
Sbjct 416 GTGCTATAAGCAAGATTGGACTGGTGGATTCAAGGCTGGATTTAGGATTCTGGCTCCCAC 475
Query 535 CACATACATATTCTTCGCGTCTGCGATTCCTGTTATTTCATTCGGCGAACAGTTGGAACG 594
||| |||||||| |||||||||||||||||||| || |||||||| ||||| ||||| |
Sbjct 476 CACTTACATATTTTTCGCGTCTGCGATTCCTGTCATCTCATTCGGTGAACAACTGGAAAG 535
Query 595 AAGCACTGATGGAGTTCTTACCGCTGTTCAGACAC-TGGCCTCTACAGCCATTTGTGGAA 653
|||||| ||||||||||| || |||||||| || | | || |||||||||||||| || |
Sbjct 536 AAGCACCGATGGAGTTCTCACGGCTGTTCAAAC-CTTAGCATCTACAGCCATTTGCGGCA 594
Query 654 TCATTCACTCGATCATCGGAGGCCAGCCTCTGCTTATACTCGGAGTTGCAGAGCCAACTG 713
| || ||||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct 595 TGATACACTCCATTATCGGAGGTCAGCCACTGCTTATTCTCGGAGTTGCTGAGCCAACTG 654
Query 714 TTATTATGTACACATTCATGTTTAACTTTGCTAAAGG-GAGACCTGAACTGGGACGCA-A 771
| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| | |
Sbjct 655 TGATTATGTACACATTCATGTTTAACTTTGC-AAAGGCCAGACCTGAATTGGGACG-AGA 712
Query 772 TTTATTCTTGGCTTGGTCTGGATGGGTTTGTGTCTGGACTTCGTTGATACTGTTTGTGTT 831
| |||||||| |||||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct 713 CCTCTTCTTGGCGTGGTCTGGATGGGTTTGTGTTTGGACTGCTTTGATGCTGTTTGTGTT 772
Query 832 GGCTATATGTGGAGCTTGTT-CATTTATCAACAGATTCAC-CAGAGTAGCTGGAGAATTG 889
|||||||||||||||||||| || | ||||| || ||||| | |||||||||||||||||
Sbjct 773 GGCTATATGTGGAGCTTGTTCCA-TCATCAATAGGTTCACTC-GAGTAGCTGGAGAATTG 830
Query 890 TTTGGCCTTCTTATAGCTATGCTCTTCATGCAACAAGCCATCAAA-GGATTAGTCGATGA 948
||||| || ||||| |||||||||||||||||||||||||||||| || || ||||||||
Sbjct 831 TTTGGACTGCTTATTGCTATGCTCTTCATGCAACAAGCCATCAAAGGGCTT-GTCGATGA 889
Query 949 ATTTCGCGCTCCTGCGA-GAGAGGATCTGAAACTTG-TGGAGTTTTTACCTTCCTGGAGA 1006
||| ||| ||||| | |||| ||| ||| | || |||||| ||||||||||||||
Sbjct 890 ATTCCGCATTCCTG-AACGAGAAAATCAGAAGC-TGAAGGAGTTCTTACCTTCCTGGAGG 947
Query 1007 TTTGCAAATGGGATGTTTGCTTTGGTTCTTTCCTTTGGTCTTCTGATAACTGCACTTAGA 1066
||||| ||||||||||||||| ||||||| |||||||| ||||| |||||| |||||||
Sbjct 948 TTTGCTAATGGGATGTTTGCTCTGGTTCTCTCCTTTGGCCTTCTTCTAACTGGACTTAGA 1007
Query 1067 AGCAGAAAAGCAAGATCATGGAGATATGGAACAGGCTGGCTTAGAAGTTTAGTAGCTGAC 1126
||||||||||| ||||||||| | || ||||| |||||||| ||||| ||| ||||||||
Sbjct 1008 AGCAGAAAAGCCAGATCATGGCGGTACGGAACTGGCTGGCTCAGAAGCTTAATAGCTGAC 1067
Query 1127 TATGGTGTGCCACTCATGGTTCTGGTGTGGACCGGTGTCTCCTACATCCCAACAGGAGAT 1186
|||||||| ||||||||||| || ||||||||||||||||||||||| ||| |||||||
Sbjct 1068 TATGGTGTACCACTCATGGTGCTCGTGTGGACCGGTGTCTCCTACATTCCAGCAGGAGAC 1127
Query 1187 GTTCCAAAAGGAATTCCTCGGCGACTTTTTAGCCCAAATCCTTGGTCCCCTGGTGCTTAT 1246
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GTTCCAAAAGGAATTCCCCGGCGACTTTTTAGCCCAAATCCTTGGTCCCCTGGTGCTTAT 1187
Query 1247 -GAGAATTGGACTGTTGTAAAGGAGATGCTTCAAGTTCCAATTGTCTACATAATTGGAGC 1305
|| || ||||| || ||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 1188 GGA-AACTGGACCGTAGTAAAGGAGATGCTTGATGTTCCAATCGTCTACATAATTGGAGC 1246
Query 1306 ATTCATTCCAGCAACAATGATTGCAGTTCTTTACTACTTCGATCATAGTGTAGCATCACA 1365
|||||||||||| |||||||||| || |||||||||||||| |||||||| || |||||
Sbjct 1247 TTTCATTCCAGCATCAATGATTGCTGTGCTTTACTACTTCGACCATAGTGTTGCTTCACA 1306
Query 1366 GCTTGCGCAGCAGAAAGAATTCAATTTGAGAAAACCATCTTCTTACCACTATGATC-TGC 1424
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 1307 GCTCGCGCAGCAGAAAGAATTCAATTTGAGAAAACCGTCTTCTTACCACTATGA-CTTGC 1365
Query 1425 TTCTTCTTGGATTTCTGACCTTAATGTGTGGTCTACTTGGAATTCCTCCATCAAATGGAG 1484
|||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||| |
Sbjct 1366 TTCTTCTTGGGTTTCTGACATTAATGTGTGGTCTACTTGGAGTCCCTCCATCAAATGGTG 1425
Query 1485 TCATCCCTCAATCACCAATGCATACTAAGAGCTTAGCAACACTAAAATATCAGCTGCTTC 1544
|||| |||||||| ||||||||||| |||||||||||||| || ||||||||| ||||||
Sbjct 1426 TCATTCCTCAATCTCCAATGCATACCAAGAGCTTAGCAACTCTTAAATATCAGTTGCTTC 1485
Query 1545 GGAACAGACTAGTTGCAACTGCTCGCAA-AAGCATC-AAGCAGAATGCGAGTCTAGGACA 1602
| |||||||| || ||||| || || || ||| ||| || | |||||||||| | |||||
Sbjct 1486 GTAACAGACTGGTCGCAACAGCACG-AAGAAGTATCAAAAC-GAATGCGAGTTTGGGACA 1543
Query 1603 GTTGTATGGA-AACATGCAAGATGTTTATAATCAAATGCAGACTCCATTAGTCTACCAAC 1661
| ||| || || |||||||| | ||| ||||| |||||||| |||||||| ||||| |
Sbjct 1544 ACTCTAT-GACAATATGCAAGAAGCTTACAATCACATGCAGACACCATTAGTATACCAGC 1602
Query 1662 AGCCTCAGGGTCTGAAAGAGCT-AAGAGAATCAACAATCCAAGCAACAACATTCACAGGA 1720
| || || ||| | |||||||| ||| ||||| ||||||||||| || |||||||| |||
Sbjct 1603 AACCCCAAGGTTTAAAAGAGCTCAAG-GAATCGACAATCCAAGCTACTACATTCACCGGA 1661
Query 1721 AATCTCGATGCTCCAGTTGATGAGACTCTGTTTGATATCGAGAAAGAGATTGATGATTTA 1780
|| ||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1662 AACCTCAATGCTCCAGTTGATGAAACTCTGTTTGATATAGAGAAAGAAATTGATGATTTA 1721
Query 1781 TTGCCAATTGAAGTCAAAGAACAGA-GAG-TAAGCAACTTGCTTCAAG-C-AGTAATGGT 1836
| ||| |||||||||||||||| | | | ||||||||||||||| || | | ||||||
Sbjct 1722 CTACCAGTTGAAGTCAAAGAACA-ACG-GTTAAGCAACTTGCTTC-AGTCTA-CAATGGT 1777
Query 1837 TGGAGGGTGTGTTGCAGCTATGCCTCTCCTTAAAATGATCCCTACATCAGTCCTTTGGGG 1896
||||| || ||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1778 AGGAGGATGCGTTGCAGCTATGCCTATCCTTAAAATGATCCCAACATCAGTCCTTTGGGG 1837
Query 1897 CTACTTTGCCTTCATGGCAATCGAAAGCTTACCCGGAAACCAATTCTGGGAAAGAATCTT 1956
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 ATATTTTGCCTTCATGGCCATCGAAAGCTTACCCGGAAACCAATTCTGGGAAAGAATCTT 1897
Query 1957 ACTTCTCTTCACAGCTCCTAGTCGTCGATTCAAGGTCCTTGAAGA-TAACCACGCGACAT 2015
|||||| ||||| || || ||||| || |||||||| |||||||| || |||||| ||||
Sbjct 1898 ACTTCTGTTCACCGCCCCAAGTCGCCGCTTCAAGGTTCTTGAAGACTA-CCACGCAACAT 1956
Query 2016 TCGTGGAAACCGTTCCATTCAAAACGATCGCAATGTTCACAATTTTCCAAACAACTTATC 2075
|||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||
Sbjct 1957 TCGTGGAAACCGTTCCATTCAAGACGATTGCAATGTTCACTCTTTTCCAAACGACTTATC 2016
Query 2076 TCTTAA-CTTGCTTTGGTCTCACGTGGATACCAATCGCTGGAGTTATGTTCCCTCTACTG 2134
|||||| || ||||||| ||||| ||||| |||||||| ||||| ||||||||| || ||
Sbjct 2017 TCTTAATCT-GCTTTGGCCTCACATGGATCCCAATCGCAGGAGTCATGTTCCCTTTAATG 2075
Query 2135 ATCATGTTTCTGA-TACCCGTAAGGCAATATATCCTCCCAAGATTCTTCAAAAGTGCTCA 2193
|||||||| || | | |||||| | |||||| ||||||| |||||||||||| | |||||
Sbjct 2076 ATCATGTT-CTTAATCCCCGTACGACAATATCTCCTCCCTAGATTCTTCAAAGGAGCTCA 2134
Query 2194 TCTTCAGGACTTAGACGCAGCAGAGTACGAAGAAGCACCCGCTTTACCGTTCCATCTCGC 2253
|||||||||||| |||||||||||||| |||||||| || |||||||| | | |||||||
Sbjct 2135 TCTTCAGGACTTGGACGCAGCAGAGTATGAAGAAGCTCCAGCTTTACCCTACAATCTCGC 2194
Query 2254 AGTACCGGAAGCTGAGATGGGATCAACTGCTTCGTATCCATGTGATTCTG-AGATTCTTG 2312
|| | |||| | ||||| ||||| || | |||||||| | |||| || |||||||||
Sbjct 2195 AG--C-GGAAACGGAGATTGGATCCACAACATCGTATCCGGGAGATT-TGGAGATTCTTG 2250
Query 2313 ATGAGTTTATTACAAGAAGCAGAGGAGAGTTTAGACACAC-ATGTAGTCCTAAAGTTACT 2371
||||| ||||||| ||||||||||||||||||||||||| | |||||||||| || ||
Sbjct 2251 ATGAGGTTATTACCCGAAGCAGAGGAGAGTTTAGACACACGA-GTAGTCCTAAGGTCACA 2309
Query 2372 AGTTCGACTTCAACACCGGTTTATAATCGGAATCTCTCTCAAGTGTTTAGTCCTAGAGTG 2431
||||| | ||| || || || ||||||||| | | || |||||||||||||| ||||||
Sbjct 2310 AGTTCAAGTTCGACTCCAGTCAATAATCGGAGTTTGTCACAAGTGTTTAGTCCAAGAGTG 2369
Query 2432 ATTGA 2436
| |||
Sbjct 2370 AGTGA 2374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104557722525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5