BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62280.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486734 jgi|Araly1|486734|fgenesh2_kg.5__2726__AT3G62280.1 1805 0.0
Ahg475702 jgi|Araly1|475702|fgenesh2_kg.2__832__AT3G62280.1 1801 0.0
Ahg474829 jgi|Araly1|474829|fgenesh2_kg.1__4783__AT1G56670.1 69.4 6e-11
> Ahg486734 jgi|Araly1|486734|fgenesh2_kg.5__2726__AT3G62280.1
Length=1179
Score = 1805 bits (977), Expect = 0.0
Identities = 1118/1185 (94%), Gaps = 14/1185 (1%)
Strand=Plus/Plus
Query 1 GATTAAAATTATCTGAGTAGC--AAGAATTCAAAAGAAATGGATTACACTGTTTCCTCTC 58
|||||||||| | |||||||| || ||||||||||||||||||| | ||||||||||||
Sbjct 1 GATTAAAATTTTATGAGTAGCAAAATAATTCAAAAGAAATGGATTCCGCTGTTTCCTCTC 60
Query 59 TACAATGCTTCTTC-TTAGTTTTATGTCTCTCTCTTTTGGTTTGCTCTAACTCTGAAACT 117
|||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||| |
Sbjct 61 TACAATGCTTCTTCTTTA-TTTTATGTCTATCTCTTATGGTTTGCTCTAACTCTGAAATT 119
Query 118 AGTTACAAGTCAAACAAGAAACCTATATTGATAAACTTCGGCGACTCTAACTCCGACACC 177
|||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 120 AGTTCCAAGTCAAACAAGAAACGTATACTGATAAACTTCGGCGACTCTAACTCCGACACT 179
Query 178 GGAGGAGTTCTTGCTGGAGTTGGACTTCCTATCGGACTCCCTCATGGCATTACCTTCTTC 237
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 180 GGAGGAGTTCTTGCTGGAGTAGGACTTCCTATCGGACTTCCTCATGGCATTACCTTCTTC 239
Query 238 CATAGAGGCACTGGTCGTCTCGGTGACGGTCGACTCATCGTTGACTTCTACTGTGAACAT 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 CATAGAGGCACTGGTCGTCTCGGTGACGGTCGACTCATCGTTGACTTCTTCTGTGAACAT 299
Query 298 TTAAAGATGACATATTTGAGTCCATATTTGGATTCACTT-TCACCAAATTTCAAAAGAGG 356
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 300 TTAAAGATGACATATCTGAGTCCATATTTGGATTCA-TTGTCACCAAATTTCAAAAGAGG 358
Query 357 AGTCAATTTCGCAGTCTCGGGCGCCACCGCTCTTCCGA-TCTTTTCCTTCCCTCTTGCCA 415
||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||
Sbjct 359 AGTCAATTTCGCAGTCTCGGGAGCCACCGCTCTTCC-AGTGTTTTCCTTCCCTCTTGCCA 417
Query 416 TTCAAATTCGTCAATTCGTCCATTTCAAAAACCGTTCTCAAGAACTTATCTCTTCCGGTA 475
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 TTCAAATCCGCCAATTCGTCCATTTCAAAAACCGTTCTCAAGAACTTATCTCTTCCGGGA 477
Query 476 GAAGAGACCTTATTGATGATAATGGATTTAGAAACGCGTTGTACATGATCGATATTGGAC 535
||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 478 GAAGAGATCTTATTGATGATAATGGATTTAAAAACGCATTGTACATGATCGATATTGGAC 537
Query 536 AAAACGATCTTTTACTTGCTCTATATGATTCGAATTTAACCTATGCACCCGTTGTCGAAA 595
|||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 538 AAAATGATCTTTTACTTGCTCTATACGATTCAAATTTAACCTATACACCCGTTGTCGAAA 597
Query 596 AAATTCCTTCCATGCTTCTTGAGATAAAGAAAGCCATACAGACTGTATATTTATACGGAG 655
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 AAATTCCTTCCATGCTTCTCGAGATAAAGAAAGCCATACAGACCGTATATTTATACGGAG 657
Query 656 GGAGAAAGTTTTGGGTACACAACACAGGCCCATTGGGCTGTGCACCAAAAGAATTGGCGA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGAGAAAGTTTTGGGTACACAACACAGGCCCATTGGGCTGTGCACCAAAAGAATTGGCGA 717
Query 716 TTCA-CCTGCATAACGATTCGGATCTTGACCCGATTGGTTGTTTCCGGGTTCACAATGAA 774
|||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 TTCATCC-GCATAACGATTCGGATCTTGACCCGATTGGTTGTTTCCGGGTTCACAACGAA 776
Query 775 GTCGCCA-AAGCCTTCAACAAAGGACTCCTTAGTCTCTGCAACGAACTGAGATCCCAATT 833
|||| || |||| ||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 777 GTCG-CAGAAGCTTTCAACAAAGGACTCTTTAGTCTCTGCAACGAACTGAGATCGCAGTT 835
Query 834 CAAAGACGCCACTCTCGTCTACGTTGATATTTACTCCATCAAATATAAACTCTCCGCCGA 893
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 836 CAAAGACGCCACTCTCGTCTACGTTGATATTTACTCCATCAAATACAAACTCTCCGCCGA 895
Query 894 TTTCAAACTATACGGATTTGTGGACCCGTTGATGGCTTGTTGCGGTTATGGAGGAAGACC 953
|||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 896 TTTCAAACGATACGGATTTGTGGATCCGTTAATGGCTTGTTGTGGTTATGGAGGAAGGCC 955
Query 954 TAACAACTATGATCGAAAAGCAACGTGTGGTCAACCCGGTTCAACTATTTGTCGTGATGT 1013
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TAACAACTACGATCGAAAAGCAACGTGTGGTCAACCCGGTTCAACTATTTGTCGTGATGT 1015
Query 1014 AACCAAAGCAATTGTATGGGATGGGGTTCACTATACTGAAGCTGCTAACCGGTTTGTCGT 1073
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1016 AACCAAAGCAATTGTATGGGATGGGGTTCACTATACCGAAGCTGCTAACCGGTTTGTCGT 1075
Query 1074 TGATGCTGTTTTGACGAATCGGTACTCTTACCCAAAAAATTCCC-TTGACCGGTTTTGGT 1132
|||||| |||||||| |||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 1076 TGATGCGGTTTTGACAAATCGGTACTCTTACCCAAAGA-TTCCCCTTGACCGGTTTTGGT 1134
Query 1133 AGATCTAGAACAAATCAATCTATTTGACTGGTTTGGTTAATAAAG 1177
|| ||||| |||| | ||||||||| || ||||| ||||||||||
Sbjct 1135 AGTTCTAGTACAAGTTAATCTATTTAACCGGTTTTGTTAATAAAG 1179
> Ahg475702 jgi|Araly1|475702|fgenesh2_kg.2__832__AT3G62280.1
Length=1182
Score = 1801 bits (975), Expect = 0.0
Identities = 1118/1186 (94%), Gaps = 14/1186 (1%)
Strand=Plus/Plus
Query 1 GATTAAAATTATCTGAGTAGC--AAGAATTCAAAAGAAATGGATTACACTGTTTCCTCTC 58
|||||||||| | |||||||| || ||||||||||||||||||| | ||||||||||||
Sbjct 1 GATTAAAATTTTATGAGTAGCAAAATAATTCAAAAGAAATGGATTCCGCTGTTTCCTCTC 60
Query 59 TACAATGCTTCTTC-TTAGTTTTATGTCTCTCTCTTTTGGTTTGCTCTAACTCTGAAACT 117
|||||| ||||||| ||| |||||||||| |||||| ||||||||||||||||||||| |
Sbjct 61 TACAATTCTTCTTCTTTA-TTTTATGTCTATCTCTTATGGTTTGCTCTAACTCTGAAATT 119
Query 118 AGTTACAAGTCAAACAAGAAACCTATATTGATAAACTTCGGCGACTCTAACTCCGACACC 177
|||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 120 AGTTCCAAGTCAAACAAGAAACGTATACTGATAAACTTCGGCGACTCTAACTCCGACACT 179
Query 178 GGAGGAGTTCTTGCTGGAGTTGGACTTCCTATCGGACTCCCTCATGGCATTACCTTCTTC 237
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 180 GGAGGAGTTCTTGCTGGAGTAGGACTTCCTATCGGACTTCCTCATGGCATTACCTTCTTC 239
Query 238 CATAGAGGCACTGGTCGTCTCGGTGACGGTCGACTCATCGTTGACTTCTACTGTGAACAT 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 CATAGAGGCACTGGTCGTCTCGGTGACGGTCGACTCATCGTTGACTTCTTCTGTGAACAT 299
Query 298 TTAAAGATGACATATTTGAGTCCATATTTGGATTCACTT-TCACCAAATTTCAAAAGAGG 356
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 300 TTAAAGATGACATATCTGAGTCCATATTTGGATTCA-TTGTCACCAAATTTCAAAAGAGG 358
Query 357 AGTCAATTTCGCAGTCTCGGGCGCCACCGCTCTTCCGA-TCTTTTCCTTCCCTCTTGCCA 415
||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||
Sbjct 359 AGTCAATTTCGCAGTCTCGGGAGCCACCGCTCTTCC-AGTGTTTTCCTTCCCTCTTGCCA 417
Query 416 TTCAAATTCGTCAATTCGTCCATTTCAAAAACCGTTCTCAAGAACTTATCTCTTCCGGTA 475
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 TTCAAATCCGCCAATTCGTCCATTTCAAAAACCGTTCTCAAGAACTTATCTCTTCCGGGA 477
Query 476 GAAGAGACCTTATTGATGATAATGGATTTAGAAACGCGTTGTACATGATCGATATTGGAC 535
||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 478 GAAGAGATCTTATTGATGATAATGGATTTAAAAACGCATTGTACATGATCGATATTGGAC 537
Query 536 AAAACGATCTTTTACTTGCTCTATATGATTCGAATTTAACCTATGCACCCGTTGTCGAAA 595
|||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 538 AAAATGATCTTTTACTTGCTCTATACGATTCAAATTTAACCTATACACCCGTTGTCGAAA 597
Query 596 AAATTCCTTCCATGCTTCTTGAGATAAAGAAAGCCATACAGACTGTATATTTATACGGAG 655
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 AAATTCCTTCCATGCTTCTCGAGATAAAGAAAGCCATACAGACCGTATATTTATACGGAG 657
Query 656 GGAGAAAGTTTTGGGTACACAACACAGGCCCATTGGGCTGTGCACCAAAAGAATTGGCGA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGAGAAAGTTTTGGGTACACAACACAGGCCCATTGGGCTGTGCACCAAAAGAATTGGCGA 717
Query 716 TTCA-CCTGCATAACGATTCGGATCTTGACCCGATTGGTTGTTTCCGGGTTCACAATGAA 774
|||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 TTCATCC-GCATAACGATTCGGATCTTGACCCGATTGGTTGTTTCCGGGTTCACAACGAA 776
Query 775 GTCGCCA-AAGCCTTCAACAAAGGACTCCTTAGTCTCTGCAACGAACTGAGATCCCAATT 833
|||| || |||| ||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 777 GTCG-CAGAAGCTTTCAACAAAGGACTCTTTAGTCTCTGCAACGAACTGAGATCGCAGTT 835
Query 834 CAAAGACGCCACTCTCGTCTACGTTGATATTTACTCCATCAAATATAAACTCTCCGCCGA 893
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 836 CAAAGACGCCACTCTCGTCTACGTTGATATTTACTCCATCAAATACAAACTCTCCGCCGA 895
Query 894 TTTCAAACTATACGGATTTGTGGACCCGTTGATGGCTTGTTGCGGTTATGGAGGAAGACC 953
|||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 896 TTTCAAACGATACGGATTTGTGGATCCGTTAATGGCTTGTTGTGGTTATGGAGGAAGGCC 955
Query 954 TAACAACTATGATCGAAAAGCAACGTGTGGTCAACCCGGTTCAACTATTTGTCGTGATGT 1013
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TAACAACTACGATCGAAAAGCAACGTGTGGTCAACCCGGTTCAACTATTTGTCGTGATGT 1015
Query 1014 AACCAAAGCAATTGTATGGGATGGGGTTCACTATACTGAAGCTGCTAACCGGTTTGTCGT 1073
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1016 AACCAAAGCAATTGTATGGGATGGGGTTCACTATACCGAAGCTGCTAACCGGGTTGTCGT 1075
Query 1074 TGATGCTGTTTTGACGAATCGGTACTCTTACCCAAAAAATTCCC-TTGACCGGTTTTGGT 1132
|||||| |||||||| |||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 1076 TGATGCGGTTTTGACAAATCGGTACTCTTACCCAAAGA-TTCCCCTTGACCGGTTTTGGT 1134
Query 1133 AGATCTAGAACAAATCAATCTATTTGACTGGTTTGGTTAATAAAGT 1178
|| ||||| |||| ||||||||||| || ||||| |||||||||||
Sbjct 1135 AGTTCTAGTACAAGTCAATCTATTTAACCGGTTTTGTTAATAAAGT 1180
> Ahg474829 jgi|Araly1|474829|fgenesh2_kg.1__4783__AT1G56670.1
Length=1173
Score = 69.4 bits (37), Expect = 6e-11
Identities = 43/46 (93%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 497 ATGGATTTAGAAACGCGTTGTACATGATCGATATTGGACAAAACGA 542
||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 489 ATGGATTCAAAAACGCGTTGTACATGATCGATATTGGACAGAACGA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5