BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62300.2
Length=2514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486736 jgi|Araly1|486736|fgenesh2_kg.5__2728__AT3G62300.1 3153 0.0
Ahg475700 jgi|Araly1|475700|fgenesh2_kg.2__830__AT3G62300.1 3109 0.0
> Ahg486736 jgi|Araly1|486736|fgenesh2_kg.5__2728__AT3G62300.1
Length=2310
Score = 3153 bits (1707), Expect = 0.0
Identities = 2137/2339 (91%), Gaps = 52/2339 (2%)
Strand=Plus/Plus
Query 155 AGCTCACTTTATCTTTCG--TCTC-TCTTCTTAGGTCTAGGGTTCTGGTGGAGAAGATTG 211
|||||||||||||||||| |||| |||||||||||||||||||||||| || |
Sbjct 1 AGCTCACTTTATCTTTCGTCTCTCTTCTTCTTAGGTCTAGGGTTCTGGT------GA-T- 52
Query 212 TGGTTGTTTCTTAGGGTTTTCTGAGAGAAAGCATGTTGTTAACTACGGGAAGAAAGGAGA 271
| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 53 T-GTTG---CTTTGGGTTTTCTGAGAGAAACCATGTTGTTAACTACGGGAAGAAAGGAGA 108
Query 272 AACTCTCTGTTTCTAAAGGTTCTGAAATTGAAATCTCGTCTCAAGAGTATGAGTATGGTA 331
||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 109 AACTCTCCGTTTCTAAAGGTTCTGAAATTGAAGTCTCTTCTCAAGAGTATGAGTATGGTA 168
Query 332 GTGGAAATGTCTGGTATTGTGTCATTCTCGAAGAAAATCTAGCTAAATCGAAGCGGAAGA 391
||| ||||||||||| || | |||||||||||||| |||||||||||||||||||||||
Sbjct 169 CTGGCAATGTCTGGTACTGCGCCATTCTCGAAGAAACTCTAGCTAAATCGAAGCGGAAGA 228
Query 392 AGCTCTCTGTCCGTCACTTGGATCCTCTGCTCAAGTATGATTATTCTCCTCCGTTAA-TC 450
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 229 AGCTCTCCGTTCGTCACTTGGATCCTCTGCTCAAGGATGATTATTCTCCTCCGTTAATTC 288
Query 451 AAAACCACCGTGCATCGTTTCATGCGTCCAGTTCCGCCGCCGGATCCATTTCCAGAGGTC 510
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 289 -AAACCACCGTGCATCGTTTGATGCGTCCAGTTCCGCCGCCGGATCCGTTTCCAGAGGTC 347
Query 511 GATTTTGAGGAAGGTGACGTGGTTGACGCTGCTTATAAAGGTGGTTGGTGTTCTGGCTCG 570
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 348 GATTTTGAGGAAGGTGACGTGGTTGACGCTGCTCATAAAGGTGGTTGGTGGTCTGGCTTG 407
Query 571 GTGGTTAAAGTTTTGGGAAATCGGCGTTTCTTAGTGTATCTTAGATTCCAACCTGATGTC 630
||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 408 GTGATTAAAGTGCTGGGAAATCGGCGTTTCTTGGTGTATCTCAGATTCCAACCTGATGTC 467
Query 631 ATTGAGCTTCTACGAAAGGATCTGCGTCCCCATTTCGTTTGGAAAGATGAAGAGTGGTTT 690
|| ||||||| |||||||||||||||||| |||||| |||||||||||| || ||||||
Sbjct 468 ATCGAGCTTCAACGAAAGGATCTGCGTCCGCATTTCACTTGGAAAGATGACGAATGGTTT 527
Query 691 CGATGCGAGAAACAACAATTGATTGAGTCAGATTTTAGTGCTGGAAAGTCTGTTGAAGTC 750
|||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||
Sbjct 528 CGATACGAGAAACTACAATTGACTGAGTCGGATTTTAGTGCCGGAAAGTCTGTAGAAGTC 587
Query 751 AGAACCAAGGTAGACAAATT-GGGCGATGTTTGGGCTCCGGCTATGGTCATTAAGGAGGA 809
|||||| ||||| || |||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 588 AGAACCGAGGTACAC-AATTCGGGCCATGTTTGGGCTCCGGCTATGGTCATTAAGGAGAA 646
Query 810 TGAGGATGGGACAATGTTGGTGAAGTTGAAGACTTTGAAG-GAGGAAGAGGTTAATTGCA 868
||| ||||||||| | ||||||||||||||||||||| || || |||||||| ||||||
Sbjct 647 TGAAGATGGGACATTATTGGTGAAGTTGAAGACTTTG-AGCGATGAAGAGGTCGATTGCA 705
Query 869 CAAAGATAAGCGTTTCTTATTCCGAAATCCGACCTTCGCCATTGCCTATTGGTTTAAGAG 928
| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 706 CCAAGATAAGCGTTTCTTATTCCAAAATCCGACCTTCACCACTGCCTATTGGTTTAAGAG 765
Query 929 ATTACAAATTGATGGAAAACGTGGATGCGCTAGTAGAGTCTGGTTGGTGTCCTGGTGTTG 988
||||||||||||||||||| ||||||||||| || |||||||| |||||||| |||||||
Sbjct 766 ATTACAAATTGATGGAAAATGTGGATGCGCTTGTTGAGTCTGGATGGTGTCCGGGTGTTG 825
Query 989 TTAGTAAAGTTCTTG-CTGGGAAGAGATACGCAGTGGA-TTTGGGGCCAAACAGGGAGAG 1046
|||||||||||| || ||||||| |||||||||| || |||||||||||||| ||||||
Sbjct 826 TTAGTAAAGTTC-TGTTTGGGAAGCGATACGCAGT-GACTTTGGGGCCAAACAAGGAGAG 883
Query 1047 TAAGGAGTTTAGCCGCTTGCAGTTAAGACCTTCTATAGAGTGGAAAGATGGAATTTGGCA 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 884 TAAGGAGTTTAGCCGCTTGCAGTTAAGACCTTCTATAGAGTGGAAAGATGGAGTTTGGCA 943
Query 1107 TAGAA-AAGAAAAGGTTTCA-GGTAGCGAGGAAAGTTCGCATGCAGTTGAAGAAACAGCT 1164
|| || ||||||| |||| | | |||||| || |||||||||||||||||||||||||||
Sbjct 944 TA-AAGAAGAAAAAGTTT-ATGATAGCGAAGAGAGTTCGCATGCAGTTGAAGAAACAGCT 1001
Query 1165 GC-TTCAACCCGCATAAGGATCACTGTTCGAACTGCCTTGAAAGAGAAAAAAGCTTTGG- 1222
| |||||||||||||||| | ||||||||||||||||||| ||||||||| |||| ||
Sbjct 1002 -CGTTCAACCCGCATAAGGGTAACTGTTCGAACTGCCTTGAGAGAGAAAAATGCTTCGGC 1060
Query 1223 GTACTGGAATCAATGTGAGGACGACACGCTCTTCTAGT-G-G------AG-CTATGCATA 1273
| | | || ||| ||||| ||||||||||||||||| | | || |||||| |
Sbjct 1061 CT-CAGTAAAAAATTTGAGGGCGACACGCTCTTCTAGTGGTGCTATCCAGAATATGCAGA 1119
Query 1274 ACCCTCTTCCTGCCTCTTTCAATGGAGGAGATGTTGCAGAGGCTGGTAGAGTATCTGTCA 1333
| |||||||||||||| ||| | | ||||||||||||||||||||||||| ||||||||
Sbjct 1120 ATCCTCTTCCTGCCTC-TTCCA--GTGGAGATGTTGCAGAGGCTGGTAGAGCATCTGTCA 1176
Query 1334 CTGTGAATGAAACACCGCTCTTCGAAACTGCAGCTCAGTTATCTGGAGAACTAGGGAATA 1393
|||||| |||||||||||||| || |||||||||| |||||||||||| |||||| ||
Sbjct 1177 CTGTGAGTGAAACACCGCTCTCCGTAACTGCAGCT---TTATCTGGAGAATTAGGGAGTA 1233
Query 1394 GTTTGGCTGATGTTGTGATGAATGAGAGCGCTCCAGTCACAAGCCAACCGGAGATAGCAG 1453
| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1234 GGATGACTGATGTTGTGATGAATGAGAACACTCCAGTCACAAGCCAACCGGAGATAGCAG 1293
Query 1454 CACCAAAAGAGTTTCACCCATCGGTAGTCCTGGGCGTAGCTGCAGCAGTCAAAACACAAG 1513
|||||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 1294 CACCAAAAGATTTTCACCCATCGATAGTCCTGGGCGTAGCCGCAGCGGTCAAAACACAAG 1353
Query 1514 GAAAAACAACTCCGAAGAAGAAACTTCAAGCGATGAAGAATCAAAAGAGCTCTACAAATG 1573
|||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1354 GAAAAACATCTCCAAAGAAGAAACTTCAGGCAATGAAGAATCAAAAGAGCTCTACAAATG 1413
Query 1574 ATTCTGTTGGAGAGAAGGTGAGTGTTAACAAGAGGAAAAGAGGACAGCCACGCAAGTTCA 1633
|||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1414 ATTCTGCTAAAGAGAAGGTGAGTGTTAATAAGAGGAAAAGAGGACAGCCACGCAAGTTCA 1473
Query 1634 T-AGTCGCAGAGCCTAAGCAGAAGATTGGTGTGTCTGGTAATAATTCAAAGGCTGCCACT 1692
| || | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1474 TAAG-CACAGAGCCTAAGCAGAAGACTGGTGTGTCTGGTAATAATTCAAAGGCTGCCACT 1532
Query 1693 ATTGAACATGCCGATATGACTGATGATGATAGGCCTCTCGCTTCATGGGTCCACACTGGA 1752
||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| |||||
Sbjct 1533 ATTGAACATACCGATATGACTGAGGATGATAGGCCTCTTGCTTCATGGATCCACGCTGGA 1592
Query 1753 AATTCATCATCGGGGCAATCTGTTTCTCGGACTCCTGATATAGGGCTTAATACAGTTGTG 1812
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1593 AATTCATCATCGGGGCAATCTGTTTCTCGGACTCCTGATCTAGGGCTTAATACAGTTGTG 1652
Query 1813 GAAAAGCATGTCGATATTGTGGAAACTCCCCCAGGGAGAGAGTCGACAATGGTTCTGCCA 1872
||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1653 GAAAAGCATGTCGATGTTTTGGAAACTCCCCCAGCGAGAGAGTCGACAATGGTTCTACCA 1712
Query 1873 TTTGTAAAGAAGTCACAGCTTTGGAAAGTCCTTGAATCAATGGAGGTCTTCAAAGTC-GT 1931
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1713 TTTGTAAAGAAGTCACAGCTTTGGAAAGTCCTTGAATCAATGGAGGTCTTCAAA-ACAGT 1771
Query 1932 GCCACAGAGTCCACATTTCAGCCCTCTGCTAGAGAGCGAAGAAGAGTGCCGTGAAGGAGA 1991
||||||| ||||||||||||| || |||||||| ||||||||||||| ||||||||||||
Sbjct 1772 GCCACAGCGTCCACATTTCAGTCCACTGCTAGATAGCGAAGAAGAGTTCCGTGAAGGAGA 1831
Query 1992 CGCCATTGGTAGAATGGTGATGTTTAGTTCGCTGTTAGAGAAAGTCAACAATCTACAAGT 2051
|| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1832 TGCTATTGGTACAATGGTGAAGTTTAGTTCGCTGTTAGAGAAAGTCAACAACCTACAAGT 1891
Query 2052 CGACGATCCAATAAGCTCGATTAACAGGATCGACGAGTGTTTCCTCAAGCTTGAGAAACA 2111
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1892 CGACGATCCAATAAGCTCGATTAATAGGATTGACGAGTGTTTCCTCAAGCTTGAAAAACA 1951
Query 2112 CGGGTTCAATGTTACAACACCTCGATCTAGGATAGCCAAGATACTGTCCATTAAAGAAAG 2171
|||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||
Sbjct 1952 CGGGTTCAATGTTACAACACCTCGATCTCGGATCGCCAAGCTATTGTCCATTAAAGAAAG 2011
Query 2172 GCAGACATGCGCATTGGAGGAATTAAAAGCTGTTGAGGAAAAGATCACAGAGAATGACAA 2231
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 GCAGACATGCGCATTGGAAGAATTAAAAGCTGTTGAGGAAAAGATCACAGAGAATGACAA 2071
Query 2232 TAAAAGAAGGAAGTATGAAGAAGATATTGTTGAATTGCAGAGGCAAGAAGTGTTGATGAA 2291
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 2072 TAAAAGAAGGAAGTATGAAGAAGATATTGCTGAATTGCAGAGACAAGAAGTGTTGATGAA 2131
Query 2292 GGAAGCAAAAGTCACACTAGACAATGAGATAGCTCGGATGCAGTCTCAAGCAGCTGTTCT 2351
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2132 GGAAGCAAAAGTAACACTAGACAATGAGATAGCTCGGATGCAGTCTCAAGCAGCTGTTCT 2191
Query 2352 TGACCAAGAGGTTCAGAATGTAGATCACGAATTTCAGGCAATTCTCGCTGCCCCATGGAA 2411
||||||| ||||||||||||||||||| || |||||||||||| ||||| ||| ||||||
Sbjct 2192 TGACCAAAAGGTTCAGAATGTAGATCAGGAGTTTCAGGCAATTGTCGCTACCCAATGGAA 2251
Query 2412 ATAAGCAAGTCGTTGATCAAACCTTTGTGTTTAAGAATAATTGAGATCTCTGTACGTTG 2470
||||||||||||| ||||| || ||| |||||||||||||||||| |||||||| ||||
Sbjct 2252 ATAAGCAAGTCGTAGATCAGACGTTTATGTTTAAGAATAATTGAGTTCTCTGTAAGTTG 2310
> Ahg475700 jgi|Araly1|475700|fgenesh2_kg.2__830__AT3G62300.1
Length=2312
Score = 3109 bits (1683), Expect = 0.0
Identities = 2125/2336 (91%), Gaps = 46/2336 (2%)
Strand=Plus/Plus
Query 155 AGCTCACTTTATCTTTCG--TCTC-TCTTCTTAGGTCTAGGGTTCTGGTGGAGAAGATTG 211
|||||||||||||||||| |||| |||||||||||||||||||||||| || |
Sbjct 3 AGCTCACTTTATCTTTCGTCTCTCTTCTTCTTAGGTCTAGGGTTCTGGT------GA-T- 54
Query 212 TGGTTGTTTCTTAGGGTTTTCTGAGAGAAAGCATGTTGTTAACTACGGGAAGAAAGGAGA 271
| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 55 T-GTTG---CTTTGGGTTTTCTGAGAGAAACCATGTTGTTAACTACGGGAAGAAAGGAGA 110
Query 272 AACTCTCTGTTTCTAAAGGTTCTGAAATTGAAATCTCGTCTCAAGAGTATGAGTATGGTA 331
| ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 111 AGCTCTCCGTTTCTAAAGGTTCTGAAATTGAAGTCTCTTCTCAAGAGTATGAGTATGGTA 170
Query 332 GTGGAAATGTCTGGTATTGTGTCATTCTCGAAGAAAATCTAGCTAAATCGAAGCGGAAGA 391
||| ||||||||||| || | |||||||||||||| |||||||||||||||||||||||
Sbjct 171 CTGGCAATGTCTGGTACTGCGCCATTCTCGAAGAAACTCTAGCTAAATCGAAGCGGAAGA 230
Query 392 AGCTCTCTGTCCGTCACTTGGATCCTCTGCTCAAGTATGATTATTCTCCTCCGTTAATCA 451
||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 231 AGCTCTCCGTTCGTCACTTGGATCCTCTGCTCAAGGATGATTATTCTCCTCCGTTAATCC 290
Query 452 AAACCACCGTGCATCGTTTCATGCGTCCAGTTCCGCCGCCGGATCCATTTCCAGAGGTCG 511
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 291 AAACCACCGTGCATCGTTTGATGCGTCCAGTTCCGCCGCCGGATCCGTTTCCAGAGGTCG 350
Query 512 ATTTTGAGGAAGGTGACGTGGTTGACGCTGCTTATAAAGGTGGTTGGTGTTCTGGCTCGG 571
||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||
Sbjct 351 ATTTTGAGGAAGGTGACGTCATTGACGCTGCTCATAAAGGTGGTTGGTGGTCTGGCTTGG 410
Query 572 TGGTTAAAGTTTTGGGAAATCGGCGTTTCTTAGTGTATCTTAGATTCCAACCTGATGTCA 631
|| ||||||| |||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 411 TGATTAAAGTGCTGGGAAATTGGCGTTTCTTGGTGTATCTCAGATTCCAACCTGATGTCA 470
Query 632 TTGAGCTTCTACGAAAGGATCTGCGTCCCCATTTCGTTTGGAAAGATGAAGAGTGGTTTC 691
| ||||||| |||||||||||||||||| |||||| |||||||||||| || |||||||
Sbjct 471 TCGAGCTTCAACGAAAGGATCTGCGTCCGCATTTCACTTGGAAAGATGACGAATGGTTTC 530
Query 692 GATGCGAGAAACAACAATTGATTGAGTCAGATTTTAGTGCTGGAAAGTCTGTTGAAGTCA 751
||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| |||||||
Sbjct 531 GATACGAGAAACTACAATTGACTGAGTCGGATTTTAGTGCCGGAAAGTCTGTAGAAGTCA 590
Query 752 GAACCAAGGTAGACAAATTGGGCGATGTTTGGGCTCCGGCTATGGTCATTAAGGAGGATG 811
||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 591 GAACCGAGGTAGACAATTTGGGTGATGTTTGGGCTCCGGCTATGGCCATTAAGGAGAATG 650
Query 812 AGGATGGGACAATGTTGGTGAAGTTGAAGACTTTGAAG-GAGGAAGAGGTTAATTGCACA 870
| ||||||||| | |||||||||||||||||||| ||| || |||||||| |||||||
Sbjct 651 AAGATGGGACATTATTGGTGAAGTTGAAGACTTT-AAGCGATGAAGAGGTCGATTGCACC 709
Query 871 AAGATAAGCGTTTCTTATTCCGAAATCCGACCTTCGCCATTGCCTATTGGTTTAAGAGAT 930
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 710 AAGATAAGCGTTTCTTATTCCAAAATCCGACCTTCACCACTGCCTATTGGTTTAAGAGAT 769
Query 931 TACAAATTGATGGAAAACGTGGATGCGCTAGTAGAGTCTGGTTGGTGTCCTGGTGTTGTT 990
||||||||||||||||| ||||||||||| || |||||||| |||||||| |||||||||
Sbjct 770 TACAAATTGATGGAAAATGTGGATGCGCTTGTTGAGTCTGGATGGTGTCCGGGTGTTGTT 829
Query 991 AGTAAAGTTC-TTGCTGGGAAGAGATACGCAGTGGATTTGGGGCCAAACAGGGAGAGTAA 1049
|||||||||| || | ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 830 AGTAAAGTTCTTTTC-GGGAAGAGATACGCAGTGGCTTTGGGGCCAAACAAGGAGAGTAA 888
Query 1050 GGAGTTTAGCCGCTTGCAGTTAAGACCTTCTATAGAGTGGAAAGATGGAATTTGGCATAG 1109
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 889 GGAGTTTAGCCGCTTGCAGTTAAGACCTTCTATAGAGTGGAAAGATGGAGTTTGGCATA- 947
Query 1110 AA-AAGAAAAGGTTTCA-GGTAGCGAGGAAAGTTCGCATGCAGTTGAAGAAACAGCTGC- 1166
|| ||||||| |||| | | || ||| || ||||| |||| |||||||||||||||| |
Sbjct 948 AAGAAGAAAAAGTTT-ATGATATCGAAGAGAGTTCTCATGGAGTTGAAGAAACAGCT-CG 1005
Query 1167 TTCAACCCGCATAAGGATCACTGTTCGAACTGCCTTGAAAGAGAAAAAAGCTTTGG-GTA 1225
|||||||||||||||| | ||||||||||||||| ||| ||||| | |||| || |
Sbjct 1006 TTCAACCCGCATAAGGGTAACTGTTCGAACTGCCCTGAGAGAGAGGCATGCTTCGGCCT- 1064
Query 1226 CTGGAATCAATGTGAGGACGACACGCTCTTCTAGT-G-G------AG-CTATGCATAACC 1276
| | || ||| ||||| ||||||||||||||||| | | || |||||| || |
Sbjct 1065 CAGTAAAAAATTTGAGGGCGACACGCTCTTCTAGTGGTGCTATCCAGAATATGCAGAATC 1124
Query 1277 CTCTTCCTGCCTCTTTCAATGGAGGAGATGTTGCAGAGGCTGGTAGAGTATCTGTCACTG 1336
||||||||||||| ||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct 1125 CTCTTCCTGCCTC-TTCCA--GTGGAGATGTTGCAGAGGCTGGTAGAGCATCTGTCACTG 1181
Query 1337 TGAATGAAACACCGCTCTTCGAAACTGCAGCTCAGTTATCTGGAGAACTAGGGAATAGTT 1396
||| |||||||||||||| || |||||||||| |||||||||||| |||||| |||
Sbjct 1182 TGAGTGAAACACCGCTCTCCGTAACTGCAGCT---TTATCTGGAGAATTAGGGAGTAGGA 1238
Query 1397 TGGCTGATGTTGTGATGAATGAGAGCGCTCCAGTCACAAGCCAACCGGAGATAGCAGCAC 1456
|| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1239 TGACTGATGTTGTGATGAATGAGAACACTCCAGTCACAAGCCAACCGGAGATAGCAGCAC 1298
Query 1457 CAAAAGAGTTTCACCCATCGGTAGTCCTGGGCGTAGCTGCAGCAGTCAAAACACAAGGAA 1516
||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 1299 CAAAAGATTTTCACCCATCGATAGTCCTGGGCGTAGCCGCAGCGGTCAAAACACAAGGAA 1358
Query 1517 AAACAACTCCGAAGAAGAAACTTCAAGCGATGAAGAATCAAAAGAGCTCTACAAATGATT 1576
||||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1359 AAACATCTCCAAAGAAGAAACTTCAGGCAATGAAGAATCAAAAGAGCTCTACAAATGATT 1418
Query 1577 CTGTTGGAGAGAAGGTGAGTGTTAACAAGAGGAAAAGAGGACAGCCACGCAAGTTCAT-A 1635
||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1419 CTGCTAAAGAGAAGGTGAGTGTTAATAAGAGGAAAAGAGGACAGCCACGCAAGTTCATAA 1478
Query 1636 GTCGCAGAGCCTAAGCAGAAGATTGGTGTGTCTGGTAATAATTCAAAGGCTGCCACTATT 1695
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1479 G-CACAGAGCCTAAGCAGAAGACTGGTGTGTCTGGTAATAATTCAAAGGCTGCCACTATT 1537
Query 1696 GAACATGCCGATATGACTGATGATGATAGGCCTCTCGCTTCATGGGTCCACACTGGAAAT 1755
|||||| ||||||||||||| |||||||||||||| ||||||||| ||||| ||||||||
Sbjct 1538 GAACATACCGATATGACTGAGGATGATAGGCCTCTTGCTTCATGGATCCACGCTGGAAAT 1597
Query 1756 TCATCATCGGGGCAATCTGTTTCTCGGACTCCTGATATAGGGCTTAATACAGTTGTGGAA 1815
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1598 TCATCATCGGGGCAATCTGTTTCTCGGACTCCTGATCTAGGGCTTAATACAGTTGTGGAA 1657
Query 1816 AAGCATGTCGATATTGTGGAAACTCCCCCAGGGAGAGAGTCGACAATGGTTCTGCCATTT 1875
|||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1658 AAGCATGTCGATGTTTTGGAAACTCCCCCAGCGAGAGAGTCGACAATGGTTCTACCATTT 1717
Query 1876 GTAAAGAAGTCACAGCTTTGGAAAGTCCTTGAATCAATGGAGGTCTTCAAAGTC-GTGCC 1934
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1718 GTAAAGAAGTCACAGCTTTGGAAAGTCCTTGAATCAATGGAGGTCTTCAAA-ACAGTGCC 1776
Query 1935 ACAGAGTCCACATTTCAGCCCTCTGCTAGAGAGCGAAGAAGAGTGCCGTGAAGGAGACGC 1994
|||| ||||||||||||| || |||||||| ||||||||||||| |||||||||||| ||
Sbjct 1777 ACAGCGTCCACATTTCAGTCCACTGCTAGATAGCGAAGAAGAGTTCCGTGAAGGAGATGC 1836
Query 1995 CATTGGTAGAATGGTGATGTTTAGTTCGCTGTTAGAGAAAGTCAACAATCTACAAGTCGA 2054
||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1837 TATTGGTACAATGGTGAAGTTTAGTTCGCTGTTAGAGAAAGTCAACAACCTACAAGTCGA 1896
Query 2055 CGATCCAATAAGCTCGATTAACAGGATCGACGAGTGTTTCCTCAAGCTTGAGAAACACGG 2114
||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1897 CGATCCAATAAGCTCGATTAATAGGATTGACGAGTGTTTCCTCAAGCTNNNGAAACACGG 1956
Query 2115 GTTCAATGTTACAACACCTCGATCTAGGATAGCCAAGATACTGTCCATTAAAGAAAGGCA 2174
||||||||||||||||||||||||| |||| |||||| || |||||||||||||||||||
Sbjct 1957 GTTCAATGTTACAACACCTCGATCTCGGATCGCCAAGCTATTGTCCATTAAAGAAAGGCA 2016
Query 2175 GACATGCGCATTGGAGGAATTAAAAGCTGTTGAGGAAAAGATCACAGAGAATGACAATAA 2234
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 GACATGCGCATTGGAAGAATTAAAAGCTGTTGAGGAAAAGATCACAGAGAATGACAATAA 2076
Query 2235 AAGAAGGAAGTATGAAGAAGATATTGTTGAATTGCAGAGGCAAGAAGTGTTGATGAAGGA 2294
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2077 AAGAAGGAAGTATGAAGAAGATATTGCTGAATTGCAGAGACAAGAAGTGTTGATGAAGGA 2136
Query 2295 AGCAAAAGTCACACTAGACAATGAGATAGCTCGGATGCAGTCTCAAGCAGCTGTTCTTGA 2354
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 AGCAAAAGTAACACTAGACAATGAGATAGCTCGGATGCAGTCTCAAGCAGCTGTTCTTGA 2196
Query 2355 CCAAGAGGTTCAGAATGTAGATCACGAATTTCAGGCAATTCTCGCTGCCCCATGGAAATA 2414
|||| ||||||||||||||||||| || |||||||||||| ||||| ||| |||||||||
Sbjct 2197 CCAAAAGGTTCAGAATGTAGATCAGGAGTTTCAGGCAATTGTCGCTACCCAATGGAAATA 2256
Query 2415 AGCAAGTCGTTGATCAAACCTTTGTGTTTAAGAATAATTGAGATCTCTGTACGTTG 2470
|||||||||| ||||| || ||| |||||||||||||||||| |||||||| ||||
Sbjct 2257 AGCAAGTCGTAGATCAGACGTTTATGTTTAAGAATAATTGAGTTCTCTGTAAGTTG 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94768529560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5