BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62310.1
Length=2622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349295 jgi|Araly1|349295|fgenesh1_pg.C_scaffold_5002687 2025 0.0
Ahg488332 jgi|Araly1|488332|fgenesh2_kg.6__1466__AT5G14900.1 785 0.0
> Ahg349295 jgi|Araly1|349295|fgenesh1_pg.C_scaffold_5002687
Length=2061
Score = 2025 bits (1096), Expect = 0.0
Identities = 1168/1204 (97%), Gaps = 0/1204 (0%)
Strand=Plus/Plus
Query 171 ATGGGTACTGAGAGAAAGAGGAAAATTAGTCTGTTCGATGTTATGGACGATCCGTCTGCT 230
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTACGGAGAGAAAGAGGAAAATTAGTCTGTTCGATGTTATGGACGATCCGTCTGCT 60
Query 231 CCGGCGAAGAACGCCAAAACCAGTGGTCTTCCCGACGGCGGAATCAACAGTCTGATCAAT 290
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GCGGCGAAGAACACCAAAATCAGTGGTCTTGCCGACGGCGGAATCAACAGTCTGATCAAT 120
Query 291 AAATGGAACGGGAAGCCTTATTCACAGAGATATTATGACATTCTGGAGAAACGGAGGACT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGGAACGGGAAGCCTTATTCACAGAGATATTATGACATTCTGGAGAAACGGAGGACT 180
Query 351 CTACCTGTCTGGCTGCAGAAAGAGGAGTTTCTCAAAACGTTGAACAACAATCAAACCCTA 410
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct 181 CTACCTGTCTGGCTGCAGAAAGAGGAGTTTCTCAAAACTTTGAACAGCAATCAAACTCTA 240
Query 411 ATTCTGGTTGGTGAAACCGGTAGTGGTAAAACTACTCAGATTCCACAGTTTGTGATAGAT 470
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTCTGGTTGGTGAGACCGGTAGTGGTAAAACTACTCAGATTCCACAGTTTGTGATAGAT 300
Query 471 GCTGTGGATGCTGAAACATCGGATAAGCGTAGGAAGTGGTTGGTTGGATGCACACAGCCT 530
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTGTGGATTCTGAAACATCGGATAAGCGTAGGAAGTGGTTGGTTGGATGCACACAGCCT 360
Query 531 CGTAGAGTTGCTGCCATGTCTGTGTCCCGTCGTGTTGCTGAAGAGATGGATGTAACTATT 590
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTAGAGTTGCCGCCATGTCTGTGTCCCGTCGTGTTGCTGAAGAGATGGATGTAACTATT 420
Query 591 GGGGAAGAAGTTGGTTACAGCATCCGTTTCGAGGACTGCAGTAGCCCCAGAACGGTTCTT 650
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 GGGGAAGAAGTTGGTTACAGCATCCGTTTCGAGGATTGCAGTAGCCCCAGAACGGTGCTT 480
Query 651 AAGTACTTGACTGATGGTATGCTCCTGAGAGAAGCAATGGCGGACCCTCTTCTAGAGAGA 710
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 481 AAGTACTTGACTGATGGTATGCTCCTAAGAGAAGCAATGGCAGACCCGCTTCTAGAGAGA 540
Query 711 TACAAAGTCATTATTCTTGATGAGGCCCACGAAAGGACTCTAGCCACAGATGTGCTGTTT 770
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 TACAAAGTGATTATTCTCGATGAGGCCCACGAGAGGACTCTAGCCACAGATGTGCTGTTT 600
Query 771 GGTCTTCTGAAAGAAGTGTTGAAAAATAGACCTGATCTTAAGTTAGTTGTGATGAGTGCA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTCTTCTGAAAGAAGTGTTGAAAAATAGACCTGATCTTAAGTTAGTTGTGATGAGTGCA 660
Query 831 ACTCTAGAAGCTGAAAAGTTTCAGGATTATTTTAGCGGTGCTCCTCTGATGAAAGTTCCT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTCTAGAAGCTGAAAAGTTTCAGGATTATTTTAGCGGTGCTCCTCTGATGAAAGTTCCT 720
Query 891 GGTAGGCTTCATCCAGTTGAGATCTTTTACACTCAGGAGCCTGAGAGGGACTATCTTGAG 950
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTAGGCTTCATCCTGTTGAGATCTTTTACACTCAGGAGCCTGAGAGGGACTATCTTGAG 780
Query 951 GCTGCTATTAGAACTGTTGTCCAGATTCACATGTGTGAGCCACCTGGCGATATTCTTGTT 1010
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 GCTGCTATTAGGACTGTTGTCCAGATTCACATGTGTGAGCCACCTGGTGATATTCTTGTT 840
Query 1011 TTCTTAACTGGGGAGGAGGAGATTGAAGATGCATGCCGCAAAATCAATAAAGAGGTTGGT 1070
||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 841 TTCTTAACTGGAGAAGAGGAGATCGAAGATGCATGTCGCAAAATCAATAAAGAGGTTGGT 900
Query 1071 AATCTTGGGGATCAAGTGGGGCCTATTAAAGTAGTGCCACTGTATTCTACTCTTCCACCT 1130
||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 901 AATCTCGGAGATCAAGTGGGGCCTATTAAAGTTGTGCCATTGTATTCTACTCTTCCACCT 960
Query 1131 GCGATGCAGCAGAAGATATTTGATCCTGCTCCAGAGCCTGTAACAGAAGGTGGTCCTCCT 1190
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 GCGATGCAGCAGAAGATATTTGATCCTGCTCCAGAGCCGGTAACAGAAGGTGGTCCTCCT 1020
Query 1191 GGGAGAAAGATTGTTGTCTCCACTAACATTGCTGAGACTTCTCTCACCATAGATGGGATT 1250
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 GGGAGAAAGATTGTTGTCTCGACTAACATTGCTGAGACTTCTCTAACCATAGATGGGATT 1080
Query 1251 GTCTACGTCATTGACCCTGGTTTTGCTAAGCAAAAAGTCTATAACCCTCGAATCCGTGTT 1310
|| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GTGTACGTCATTGATCCTGGTTTTGCTAAGCAAAAAGTCTACAACCCTCGAATCCGTGTT 1140
Query 1311 GAGTCTTTGTTGGTGTCCCCAATTTCAAAGGCAAGTGCTCACCAGAGATCTGGTCGTGCC 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAGTCTTTGTTGGTGTCCCCAATTTCAAAGGCAAGTGCTCACCAGAGATCTGGTCGTGCC 1200
Query 1371 GGTA 1374
||||
Sbjct 1201 GGTA 1204
Score = 1046 bits (566), Expect = 0.0
Identities = 598/614 (97%), Gaps = 0/614 (0%)
Strand=Plus/Plus
Query 1738 TACCGAATTGCTTTATTCGGCCTAGAGAGGCTCAAAAAGCAGCAGATGAAGCTAAAGCTA 1797
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 TACCGAATTGCTTTGTCCGGCCTAGAGAGGCTCAAAAAGCAGCAGATGAAGCTAAAGCTA 1507
Query 1798 GGTTTGGACACATTGAGGGAGATCACCTCACATTGTTGAATGTCTACCACGCTTTCAAGC 1857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GGTTTGGACACATTGATGGAGATCACCTCACATTGTTGAATGTCTACCACGCTTTCAAGC 1567
Query 1858 AAAACAATGAGGATCCAAATTGGTGCTATGAAAACTTCATCAACAATAGAGCGATGAAAT 1917
|| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1568 AACACAATGAAGATCCAAATTGGTGCTATGAAAACTTCATCAACAACAGAGCGATGAAAT 1627
Query 1918 CTGCAGACAATGTTAGACAGCAGCTAGTCCGGATAATGTCAAGATTCAACCTGAAGATGT 1977
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1628 CTGCAGACAATGTTAGACAGCAGCTAGTTCGGATAATGTCAAGATTCAACCTGAAGATGT 1687
Query 1978 GCAGCACTGATTTTAACAGCCGCGACTACTACATCAACATAAGGAAGGCCATGCTTGCCG 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 GCAGCACTGATTTTAACAGCCGCGACTACTACATCAACATAAGGAAGGCCATGCTTGCCG 1747
Query 2038 GTTATTTCATGCAAGTGGCTCACTTAGAACGTACTGGCCATTACTTGACCGTCAAAGACA 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 GTTATTTCATGCAAGTGGCTCACTTAGAACGTACTGGCCATTACTTGACCGTCAAAGACA 1807
Query 2098 ACCAAGTGGTTCATTTGCATCCATCCAATTGCTTGGATCACAAACCGGAGTGGGTAATCT 2157
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1808 ACCAAGTGGTTCATTTGCATCCATCAAATTGCTTGGATCACAAACCGGAGTGGGTAATCT 1867
Query 2158 ACAACGAATATGTTTTGACTAGCCGGAATTTCATCAGAACTGTGACAGACATTCGTGGTG 2217
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1868 ACAATGAATATGTTTTGACTAGCCGGAATTTCATAAGAACTGTGACAGACATTCGTGGTG 1927
Query 2218 AATGGCTAGTTGATGTTGCTTCTCATTATTACGATCTTTCGAACTTTCCCAACTGTGAAG 2277
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1928 AATGGCTAGTAGATGTTGCTTCTCATTATTACGATCTTTCAAACTTTCCCAACTGCGAAG 1987
Query 2278 CCAAACGTGTAATCgagaagctttataagaagagagaaagggagaaggaagagagcaaga 2337
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1988 CCAAACGTGTCATCGAGAAGCTTTATAAGAAAAGAGAAAGGGAGAAGGAAGAGAGCAAGA 2047
Query 2338 agaaccggaaatga 2351
|||||||||| |||
Sbjct 2048 AGAACCGGAAGTGA 2061
Score = 230 bits (124), Expect = 5e-59
Identities = 128/130 (98%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1608 GGTAACTTGACAAAGACAGGTGAGATCATGAGTGAGTTCCCCTTGGATCCACAGATGGCA 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGTAACTTGACAAAGACAGGTGAGATCATGAGTGAGTTCCCCTTGGATCCACAGATGGCA 1260
Query 1668 AAGATGCTCATAGTCAGTCCTGAATTCAACTGCTCAAACGAGATTCTCTCAGTTTCAGCT 1727
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AAGATGCTCATAGTCAGTCCTGAATTCAACTGCTCAAACGAGATTCTCTCAGTTTCAGCC 1320
Query 1728 ATGCTATCAG 1737
||||| ||||
Sbjct 1321 ATGCTCTCAG 1330
> Ahg488332 jgi|Araly1|488332|fgenesh2_kg.6__1466__AT5G14900.1
Length=903
Score = 785 bits (425), Expect = 0.0
Identities = 729/873 (84%), Gaps = 32/873 (4%)
Strand=Plus/Plus
Query 1464 TCAAACCTTGCAAATACAGTTCTGACCTTGAAAAAACTGGGTATTG-ATGACTTGGTGCA 1522
|||||||||||||| ||||||||||||||||||| ||||||| || | ||||||| |
Sbjct 1 TCAAACCTTGCAAACACAGTTCTGACCTTGAAAAGACTGGGT-GTGAAAAACTTGGTACG 59
Query 1523 CTTTGATTTTATGGATCCCCCTGCTCCCGAAACACT-GATGCGAGCCTTAGAAGTTTTGA 1581
||| ||| |||||||| | |||||||| || || || | | || ||||| || | ||||
Sbjct 60 CTTCGATCTTATGGATGCTCCTGCTCCTGAGACCCTCGCT-CGGGCCTTGGACGATTTGT 118
Query 1582 ATTACTTGGGAGCACTGGATGATGATGGTAACTTGACAAAGACAGGTGAGATCATGAGTG 1641
|| | ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 119 ATCATTTGGGAGCACTAGATGATGAAGGTAACTTGACAAAGACAGGTGAGATGATGAGTG 178
Query 1642 AGT-TCCCCTTGGATCCACAGATGGCAAAGATGCTCATAGTCAGTCCTGAATTCAACTGC 1700
||| | ||||| || ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 AGTAT-CCCTTAGACCCACAGATGGCAAAGATGCTCATAGTCAGTCCTCAATTCAACTGC 237
Query 1701 TCAAACGAGATTCTCTC-AGTTTCAGCTATGCTATCAGTACCGAATTGCTTT-ATTC-GG 1757
|||||||||||||| || | |||| || ||| |||||||||| ||||| ||| || | ||
Sbjct 238 TCAAACGAGATTCTTTCGA-TTTCCGCGATGTTATCAGTACCAAATTG-TTTCAT-CAGG 294
Query 1758 CCTAGAG-AG--GCTCAAAAAGCAGCAGATGAAGCTAAAGCTAGGTTTGGACACATTGAG 1814
|| |||| || ||||||||||||||||||||||| ||| |||| |||| |||||||||
Sbjct 295 CCAAGAGGAGAAGCTCAAAAAGCAGCAGATGAAGCCAAATCTAGTTTTGCACACATTGAT 354
Query 1815 GGAGATCACCTCACATTGTTGAATGTCTACCACGCTTTCAAGCAAAACAATGAGGA-TCC 1873
||||| ||||||||| | |||||||| | |||||||||| ||||||||| | || ||
Sbjct 355 GGAGACCACCTCACACTCTTGAATGTGTTCCACGCTTTCTTGCAAAACAACCAAGACTC- 413
Query 1874 AAATTGGTGCTATGAAAACTTCATCAACAATAGAGCGATGAAATCTGCAGACAATGTTAG 1933
| |||||||||| ||||| ||||| ||| | ||||| ||||| ||||||| | ||| ||
Sbjct 414 AGATTGGTGCTACGAAAAATTCATAAACTACAGAGCAATGAAGTCTGCAGTTAGTGTAAG 473
Query 1934 ACAGCAGCTAGTCCGGATAATGTCAAGATT-CA-ACCTGAAGATGTGCAGCACTGATTTT 1991
| ||||||| |||||||| ||||| || || || | | ||| |||||||| | | |||
Sbjct 474 AGAGCAGCTGGTCCGGATCATGTCGAGGTTTCAGAT-T-AAGTTGTGCAGCCCAGGTTTC 531
Query 1992 AACAGCCGCGACTACTACATCAACATAAGGAAGGCCATGCTTGCCGGTTATTTCATGCAA 2051
|||||||||||||| ||| ||||||| || |||||| ||||||||||||||||||||||
Sbjct 532 AACAGCCGCGACTATTACGTCAACATTAGAAAGGCCTTGCTTGCCGGTTATTTCATGCAG 591
Query 2052 GTGGCTCACTTAGAACGTACTGGCCATTACTTGACCGT-CA-A-A---G-ACAACCAAGT 2104
||||||||| ||||||| ||||||||||||||||| || || | | | || |||||||
Sbjct 592 GTGGCTCACCTAGAACGCACTGGCCATTACTTGAC-GTTCAGAGATAAGGACGACCAAGT 650
Query 2105 GGTTCATTTGCATCCATCCAATTGCTTGGATCACAAACCGGAGTGGGTAATCTACAACGA 2164
|||||| ||||||||||| |||||| |||||||||||||||||||||| | ||||||||
Sbjct 651 GGTTCACTTGCATCCATCTAATTGCCTGGATCACAAACCGGAGTGGGTGGTTTACAACGA 710
Query 2165 ATATGTTTTGACTAGCCGGAATTTCATCAGAACTGTGACAGACATTCGTGGTGAATGGCT 2224
||||||||| |||||||| ||||||||| ||||||| ||| | |||||||||||||||||
Sbjct 711 ATATGTTTTCACTAGCCGAAATTTCATCCGAACTGTCACACATATTCGTGGTGAATGGCT 770
Query 2225 AGTTGATGTTGCTTCTCATTATTACGATCTTTCGAACTTTCCCAACTGTGAAGCCAAACG 2284
||| |||||||| | ||||| || | ||| | ||||||||||| | ||| || |||||
Sbjct 771 AGTAGATGTTGCACCACATTACTATAAGCTTGCCAACTTTCCCAATTCTGAGGCTAAACG 830
Query 2285 TGTAAT-Cgagaagctttataagaagagagaaa 2316
||| | | | |||| ||||||||||| ||||
Sbjct 831 AGTACTTCAA-AAGCACTATAAGAAGAG-GAAA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98882276020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5