BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62336.1
Length=204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939320 jgi|Araly1|939320|scaffold_503511.1 261 1e-69
Ahg908066 jgi|Araly1|908066|Al_scaffold_0002_1147 261 1e-69
> Ahg939320 jgi|Araly1|939320|scaffold_503511.1
Length=830
Score = 261 bits (141), Expect = 1e-69
Identities = 160/169 (95%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 36 GATGAAAAACATCATCGCATCTTTCAATTGTCAATTCCATCATGAGATCATTAAGGAGAA 95
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 200 GATGAAAACCATCATCGCATCTTTCAATTGTCAAATCCATCATGAGATCATTAAGGAGAA 259
Query 96 AATCGGTTTCACGATATGGATGATTGGTGAATATTTCATTATCGATTTCAGAGATCGAAA 155
||| |||||| ||||||||||||| |||||||| |||||||||| ||||||| |||||||
Sbjct 260 AATAGGTTTCGCGATATGGATGATCGGTGAATA-TTCATTATCGTTTTCAGATATCGAAA 318
Query 156 ATGGATTATCTGTTATCAAACGAAGCATTGGAGAACTGCCTTTCCCTAA 204
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 319 ATGGATTATCTGTTATCAAACGAAGCATTGGAGAACTGCCTCTCCCTAA 367
> Ahg908066 jgi|Araly1|908066|Al_scaffold_0002_1147
Length=750
Score = 261 bits (141), Expect = 1e-69
Identities = 160/169 (95%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 36 GATGAAAAACATCATCGCATCTTTCAATTGTCAATTCCATCATGAGATCATTAAGGAGAA 95
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 GATGAAAACCATCATCGCATCTTTCAATTGTCAAATCCATCATGAGATCATTAAGGAGAA 239
Query 96 AATCGGTTTCACGATATGGATGATTGGTGAATATTTCATTATCGATTTCAGAGATCGAAA 155
||| |||||| ||||||||||||| |||||||| |||||||||| ||||||| |||||||
Sbjct 240 AATAGGTTTCGCGATATGGATGATCGGTGAATA-TTCATTATCGTTTTCAGATATCGAAA 298
Query 156 ATGGATTATCTGTTATCAAACGAAGCATTGGAGAACTGCCTTTCCCTAA 204
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 ATGGATTATCTGTTATCAAACGAAGCATTGGAGAACTGCCTCTCCCTAA 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 6912075241
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5