BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62340.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486738 jgi|Araly1|486738|fgenesh2_kg.5__2730__AT3G62340.1 1447 0.0
> Ahg486738 jgi|Araly1|486738|fgenesh2_kg.5__2730__AT3G62340.1
Length=1386
Score = 1447 bits (783), Expect = 0.0
Identities = 1259/1468 (86%), Gaps = 115/1468 (8%)
Strand=Plus/Plus
Query 1 TGCTTGGTCTAAGGGCTGCTCACTTTCGAAGGATTGGAGAGGACCAAAATCAAGTTTCGT 60
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TGCTTGGTCTAAGGGCTGCTTACTTTCGAAGGATTGGAGAGGACCAAAAACAAGTTTCGT 60
Query 61 TTGATAGTATAAGAACGGTGATTTGGTATTCGCCGACTATGATTTCTCCATCAAATTTGT 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGATAGTCTAAGAACGGTGATTTGGTATTCGCCGACTATGATTTCTCCATCAAATTTGC 120
Query 121 TGGTTTGATGTTGTTTCAACCTTCTA-TGA-TTAAATAAATCTCAAAAGCTTTTGAGTTT 178
|| |||||||||||||| |||||||| ||| || | |||| |||||||||||| |||||
Sbjct 121 TGCTTTGATGTTGTTTCTACCTTCTATTGATTTTTA-AAATATCAAAAGCTTTTAAGTTT 179
Query 179 TTAACTTCACAAG-TACAAGTAGAAAGAAAAGCT--CTTGACT-TAAAGAGGAAGAGaaa 234
||||| |||| || ||| ||||| |||||||||| || | | || ||| | | |||
Sbjct 180 TTAACATCAC-AGATACTAGTAGGAAGAAAAGCTAATTTTTTTGTCAA-AGG-ATA-AAA 235
Query 235 aa-aaaaTGTTTTGTATTTAAAGAAGGTACAGTATAGT-GGAAT-GACT-TGAAGTATTG 290
|| ||||| |||||||||||| |||||| || | ||| || | | | || || |||
Sbjct 236 AAGTAAATG-TTTGTATTTAAAAAAGGTATAG-A-AGTGGGCGTCG-TTGTGGTGTGTTG 291
Query 291 GGCTGCACATGATCCAACGCTGAGGATTTTACAATTATAATTCAAAAGCATATATCTTGG 350
|| |||||||||||||||||||| || |||| | | | || ||||||||
Sbjct 292 GGATGCACATGATCCAACGCTGAAGA--TTAC-------A--C---A--ATTTATCTTGG 335
Query 351 TCATAC-CGGTTAACTACTGAAGCGGTCAAAAATAAAACACACGAAAACGTATCTTGTCC 409
|||| | ||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||
Sbjct 336 TCAT-CTCGGTTAACTGCTGAACCGGTCAAAAAGAAAACACGCGAAAATGTATCTTGTCC 394
Query 410 AAACGACACGCAGATTAATTACTGTTTAAACACATTAAGCCACGTACAATAGCCGGTCAC 469
||||||||||||||||||||| |||||||| || | | |||| |||||||||||||||
Sbjct 395 AAACGACACGCAGATTAATTAATGTTTAAAGAC--T-ATCCACCTACAATAGCCGGTCAT 451
Query 470 CAATTCAAGGCATTTATTTAGCAGGCATCCATGTTTCATTCCTCActctctctctttttc 529
||||||||||||| ||||||||| | ||| ||||||||||||||| |||| || |||||
Sbjct 452 CAATTCAAGGCATATATTTAGCAAGAATCAATGTTTCATTCCTCA--CTCTATC-TTTTC 508
Query 530 tctaaccataaaatctctttgatctctttctctGTGT-TTTGATAATGGAAAATGTTGGT 588
||||||| |||||||||||| |||||||||||| | | |||| | ||||| ||| |||||
Sbjct 509 TCTAACCCTAAAATCTCTTTTATCTCTTTCTCT-T-TCTTTGGTTATGGAGAATATTGGT 566
Query 589 GTTGGGATGCCGTTTTACGATTTAGGGCAAACAAGGGTTTACCCACTCTTGTCTGATTTC 648
|||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||
Sbjct 567 GTTGGGATGCCGTTTTACGATTTAGGGCAAACAAGGGTTTACTCACACTTCTCTGACTTC 626
Query 649 CACGATTTATCGGCGGAGAGGTATCCGGTAGGGTTCATGGATTTACTGGGTGTTCATCGT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 CACGATTTATCGGCGGAGAGGTATCCGGTAGGGTTCATGGATTTACTGGGTGTTCATCGT 686
Query 709 CATACACCCACCCATACGCCGTTGATGCATTTTCCGACCACACCTAACTCGTCCTCGAGC 768
||| ||| ||||||| |||||||| | | | | || | | || | | || |
Sbjct 687 CATGCACTCACCCATTCGCCGTTG-T-CGT---CGGAA-A-AG--AAGA-GAGAT-GA-C 734
Query 769 GAAGCTGTGAATGGAGATGACGAAGAAGAAGAAGATGGAGAAGAACAGCAGCATAAGACA 828
|||| || | ||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 735 GAAG-----AA-GAAGA--A-GAAGAAGAAGAAGATGGAGAAGAACATCAGCATAAGACA 785
Query 829 AAGAAGCGGTTTAAATTCACTAAAATGAGTAGAAAGCAGACGAAGAAGAAGGTGCCAAAA 888
|| || ||||||||||||||||| ||||| || ||||||||| |||||||||||||
Sbjct 786 AATAAACGGTTTAAATTCACTAA---GAGTATTGAGAAGACGAAGATGAAGGTGCCAAAA 842
Query 889 GTGTCATTCATCACGAGGAGTGAGGTTCTTCATCTAGATGATGGTTATAAGTGGAGAAAA 948
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GTGTCATTCATCACGAAGAGTGAGGTTCTTCATCTAGATGATGGTTATAAGTGGAGAAAA 902
Query 949 TACGGTCAAAAACCTGTCAAAGACAGCCCTTTTCCAAGAAATTATTACCGTTGCACAACA 1008
|||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 903 TACGGTCAAAAACCTGTCAAAGACAGCCCTTTTCCAAGGAATTAT----G----AC---- 950
Query 1009 ACTTGGTGTGACGTGAAGAAGAGAGTAGAGAGATCATTCAGTGATCCAAGCAGTGTAATC 1068
| || | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 ----G-TG--A----A-GAAGAGAGTAGAGAGATCATTCAGTGATCCAAGCAGTGTAATC 998
Query 1069 ACCACTTACGAAGGTCAACATACTCATCCTCGTCCACTACTCATCATGCCCAAAGAAGGC 1128
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 999 ACCACTTACGAAGGTCAACATACTCATCCTCGTCCAGTACTCATCATGCCCAAAGACCGC 1058
Query 1129 AGCTCTCCATCCAATGGCTCAGCTTCTAGGGCCCACATTGGCC--T----CC-C--TACA 1179
||||||| ||||| |||||||| ||||||| ||||| |||||| | || | ||||
Sbjct 1059 AGCTCTCGATCCAGTGGCTCAGATTCTAGGTCCCACTTTGGCCACTTTGGCCTCCGTACA 1118
Query 1180 CTCCCTCCTCAGCTTTTAGATTacaacaacca--a-caacaacaa---G--C-G-C-C-G 1227
|||||||||||||||||||||| ||||||||| | ||||||||| | | | | | |
Sbjct 1119 CTCCCTCCTCAGCTTTTAGATTTCAACAACCATCAACAACAACAACAAGGGCCGTCGCCG 1178
Query 1228 TCTTCTTTTGGAACCGAGTACATTAACAGGCAAGAAAAAGGAATTAATCATGATGATGAT 1287
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1179 TCTTCTTTTGAAACCGAGTACATTAACAGGCAAGAAAAAGGAATTGATCGTGATGATGAT 1238
Query 1288 GACGATCATGTTGTGAAGAAGAGTCGAACTCGGGATCTGCTGGATGGAGCTGGTTTAGTC 1347
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1239 GACGATCATGTTGTGAAGAAGAGTCGAACTCGGGATCTGTTGGATGGAGCTGGTTTAGTC 1298
Query 1348 AAAGATCATGGCCTTCTTCAGGATGTTGTTCCCTCTCATATCATTAAGGAAGAGTATTAG 1407
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1299 AAAGATCATGGCCTTCTTCAGGATGTTGTTTCCTCTCATATCATTAAGGAAGAGTATTAG 1358
Query 1408 TTAATCGCATAATTATGTAGCTAGCTAG 1435
||||||||||||||||||||||| ||||
Sbjct 1359 TTAATCGCATAATTATGTAGCTATCTAG 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5