BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62370.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939324 jgi|Araly1|939324|scaffold_503515.1 1796 0.0
> Ahg939324 jgi|Araly1|939324|scaffold_503515.1
Length=1126
Score = 1796 bits (972), Expect = 0.0
Identities = 1069/1117 (96%), Gaps = 1/1117 (0%)
Strand=Plus/Plus
Query 12 TTCCGGTAGAAAAATCAAAATGCTTCAGCTCGTGGTTGTAGCGTGGCTCTTGATTTTCAC 71
|||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2 TTCCGGAAGAGAAATCAAAATGCTTCAGCTCGTGGTTGTGGCGTGGCTCTTGATTTTCAC 61
Query 72 GGCGGAGACGGTTGTACCTCACCAGGAATCCGGCGAATGGAGTTGTGAATCGGACTCGGA 131
||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GGCGGAGACCGTCGTGTCTCACCAGGAATCCGGCGAATGGAGTTGTGAATCGGACTCGGA 121
Query 132 GATTCAGGTCTTAGCCGATTTCAGACCGGGGATTATCACCCTCGATGGTCACAACGATGA 191
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 122 GATCCAGGTCATAGCCGATTTCAGACCGGGGATTATCACTCTCGATGGTCACAACGACGA 181
Query 192 CTGGAAGGACATTGACGGCTCCGAGTTCCCGCTCCGACCTGCACTTGATCCGGACTCCGA 251
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 182 CTGGAAGGACATTGACGGCTCCGAGTTCCCTCTCCGACCTGCACTTGATCCGGACGCCGA 241
Query 252 TCACGAGTATGACGCCGGGAAGATGACAGTCAAGGCACTACATGATGGTCGAGATATCTA 311
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TCACGAGTATGACGCCGGAAAGATGACAGTCAAGGCACTACATGATGGTCGAGATATCTA 301
Query 312 CTTTCTTCTGGAGATTGATGGAAATTACGCTTATGATAAAGGTGAAAACAACAAGTGTCC 371
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 302 CTTTATGCTGGAAATTGATGGAAATTACGCTTATGATAAAGGTGAAAACAACAAGTGCCC 361
Query 372 TTCAGTGGCTCTCATGTTCCAAATTGGTGATCAAGCTACTTATCACAATATGGGTGGTTG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTCAGTGGCTCTCATGTTCCAAATTGGTGATCAAGCTACTTATCACAATATGGGTGGTTG 421
Query 432 TAAAGAAGGGACAGACTCATGTACCAGCAAGGCTTGCAGAGGCTTCGAGGTTGATATTAT 491
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TAAAGAAGGGACAGACTCTTGTACCAGCAAGGCTTGCAGAGGCTTCGAGGTTGATATTAT 481
Query 492 GCATTTCTCCATTGGAAATGCTATTCCAGGACGGCTTTACGGTGGTAATCCAATAGACAA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCATTTCTCCATTGGAAATGCTATTCCAGGACGGCTTTACGGTGGTAATCCAATAGACAA 541
Query 552 CGGGGAAGGAAATGGAGGTGACAGATTTGGTCATCTGGTTGACATTTATGCATGGAATCC 611
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 542 CAGGGAAGGAAATGGAGGTGACAGATTTGGTCATCTGGTTGACATTTATGCCTGGAATCC 601
Query 612 ACATTGTCGGTACCTTGATGGTCTTGGACCCTCAGGAAATGATTCCAGTGCACAGAACGA 671
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 602 ACATTGTCGGTACCTTGATGGTCTTGGACCCTCAGGAAATGATTCTAGCGCACAGAACGA 661
Query 672 TTGGCATGGAGCGTGGTGGCACAGCAGCTTCACCACTCTATCAGGTTATGTAGAGGAAGA 731
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 662 CTGGCATGGAGCATGGTGGCACAGCAGCTTCACTACTCTGTCAGGTTATGTAGAGGAAGA 721
Query 732 CAGCCCTTACACGCCAGATGGCAAGAAAGGAACTTACTATTTTGAGTTTTCAAGGCCCTT 791
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 722 CAGCCCTTACACGCCAAATGGCAAGAAAGGAACTTACTATTTTGAGTTCTCAAGGCCCTT 781
Query 792 GAGGACAATGGACCGTCTCCAACAGGATGTTCAGTTCACGCTTGGCTCGCCGGCCAAAAT 851
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 782 GAGGACAATGGACCGTCTCCAACAGGATGTTCAGTTCAAGCTTGGCTCGCCTGCCAAAAT 841
Query 852 GTCCGTCGCATTCTGGTACCCAGTGGACAGCAAACCATGGCATGGATCAGGACACTACAC 911
||| || ||||||||||||||| |||||| |||||| ||||| |||||||||||||||||
Sbjct 842 GTCGGTTGCATTCTGGTACCCAATGGACAACAAACCGTGGCACGGATCAGGACACTACAC 901
Query 912 GATCAACTGCGATTGGACACCGCTAGATATCTCCTCGGGGTCTTCTTCGGGTCTCACGGC 971
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 902 GATCAACTGCGATTGGACACCGCTAGATATCTCCTCGGGATCTTCTTCGGGTCTCACCGC 961
Query 972 TTCAACTGTCAAGGGCTCTAGCGATGGGGCCAGCATTACAGCCATTTTGTTGTCCATGAT 1031
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 962 TTCAACTGTGAAGGGCTCTAGCGATGGAACCAGCATTTCAGCCATTTTGTTGTCCATGAT 1021
Query 1032 ATCTCTTGTGTTTTCGGGTTTTATTGCATATAGGCTATTTAGTCCCAGGAACGTTCCATT 1091
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 1022 TTCTCTTGTGTTTTCGGGTTTTATTGCGTATAGGCTATTTAGTCCCAGGGACGTTCCTTT 1081
Query 1092 CACACCCATGGAAAACAATCTGTAGGAGAAATATGGT 1128
||||||||||||||||||||||||||||||||| |||
Sbjct 1082 CACACCCATGGAAAACAATCTGTAGGAGAAATA-GGT 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5