BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62380.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486742 jgi|Araly1|486742|fgenesh2_kg.5__2734__AT3G62380.1 763 0.0
Ahg951919 jgi|Araly1|951919|scaffold_25100005.1 460 8e-129
Ahg939326 jgi|Araly1|939326|scaffold_503517.1 248 7e-65
Ahg951917 jgi|Araly1|951917|scaffold_25100003.1 241 1e-62
> Ahg486742 jgi|Araly1|486742|fgenesh2_kg.5__2734__AT3G62380.1
Length=1281
Score = 763 bits (413), Expect = 0.0
Identities = 490/525 (93%), Gaps = 13/525 (2%)
Strand=Plus/Plus
Query 4 ATATTAGAGAATATTT-CCTGAATCGTCTATT----G-AA-AGGAAAAGAATTACAACAT 56
|||||| ||||||||| ||||| ||||||||| | || |||||||||||||||||||
Sbjct 1 ATATTACAGAATATTTCCCTGACTCGTCTATTGAAAGAAAGAGGAAAAGAATTACAACAT 60
Query 57 ACGTACATCTATGTATATATA--ATGAAATCCAAACACTTGCGAAGTTGATAACGTTGAA 114
|| | | | ||| || | ||| | |||||||||||||||||||||||||| ||||||||
Sbjct 61 ACAT-C-TATATATAAAGATACCAAGAAATCCAAACACTTGCGAAGTTGATTACGTTGAA 118
Query 115 GAGATTCTTGAGCGTCTTCCGGTGAAATCGCTCTCCCGATTCAAATCCGTGTCGAAGCAA 174
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 119 GAGATTCTTGAGCGTCTTCCGGTGAAATCCCTCTTCCGATTCAAATCCGTGTCGAAGCAA 178
Query 175 TGGAGATTAATGATCGAATCTACCTAT--CTCGCCAAGAAACGTCTTGTCCGACACCCAA 232
|||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 179 TGGAGATTAATGATCGAATCTAGCTATACCTCGCCAAGAAATGTCTTGTCCGACACCCAA 238
Query 233 ATCCAAAACTCCTTGTTCTTCGATTGGAAATGTCTAGTGATCGTTGTTCAAGAACCCTAT 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATCCAAAACTCCTTGTTCTTCGATTGGAAATGTCTAGTGATCGTTGTTCAAGAACCCTAT 298
Query 293 TTTTGGAAACTTATTCAAAAGATCATCACGACCACATAAACATCTTTATTCATTCTTACA 352
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TTTTGGATTCTTATTCAAAAGATCATCACGACCACATAAAAATCTTTATTCATTCTTACA 358
Query 353 CATCTCCAGTTCCATATCCCAAATATTCTACTTATGATACAGTTGGTCAAATAATGGGGT 412
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 359 CATCTCCAGTTCCATATCCCATATATTCTATTTATGATACAGTTGGTCAAATAATGGGGT 418
Query 413 ATTGCAACGGAATAGTCTGCATCTACGATCTCGGTTACATTTATCTGATTAACCCCGCAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 419 ATTGCAACGGAATAGTCTGCATCTACGATCTCGGTTACATTTATCTGATTAACCCTGCGA 478
Query 473 CGAGAAAACTCCGGATTCTTTCTCCCGAGTTTTTGCGAGAGTATA 517
| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 CAAGAAAACTCCGGATTCTTTCTCCCGAGTTTTTGCGAGAGAATA 523
Score = 431 bits (233), Expect = 6e-120
Identities = 338/386 (88%), Gaps = 17/386 (4%)
Strand=Plus/Plus
Query 528 TGGTTGGTCGAATGATTTGCCAATTAATGTGGGATTTGGAAGAGACATGGTTACAGGAAC 587
||| ||||||||||| ||| || ||| |||||||||||||||||| || |||||||||||
Sbjct 687 TGGGTGGTCGAATGAATTGACATTTAGTGTGGGATTTGGAAGAGATATTGTTACAGGAAC 746
Query 588 ATACAAAGTAATCTTGATGTATTTATTCGATCGTAATTTTGTCAAGACCGAAGCCTTAAA 647
|||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 747 ATACAAAGTAATATTGGTGTATTTATTCGATCGTAAGGTTGTCAAGACCGAAGCCTTAAA 806
Query 648 CCTAAAAAATGGCGAACGAAGATACGTATATTTCCCCATTTCTTACGGTC-AACTTGGCA 706
|||| |||||||||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 807 CCTAGAAAATGGCGAACGAAGATACGTATGTTTCCCCATTTCTTACGATCGAA-TTGGCA 865
Query 707 ATGATAAAAGATCAATCTTTGCAAATGGATCGCTTTATTGGTTGCCAAAGCCAGACGTTG 766
|||||||| ||||||||||||||||||||||||||||||| || | | || |
Sbjct 866 ATGATAAACGATCAATCTTTGCAAATGGATCGCTTTATTGC--GC----G---G--GTGG 914
Query 767 ATTTTTACACTAATCAACTAATAAAGCTGGCAGCCATCGATCTTCACACAGAAACATTTC 826
| | || || | ||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 915 -TAAT-AC--TAGTAAACTAATAAAGCTGGCAGCAATAGATCTCCACACAGAAACATTTC 970
Query 827 GTTATGTGCCACTACCGAGTTGGTACACCAAATACTGCAAAAGTGTGTACTTATGGAGTC 886
|||||||| ||||||||| ||||||||||||| | | ||||||||||||||| |||||||
Sbjct 971 GTTATGTGTCACTACCGACTTGGTACACCAAAGAATCCAAAAGTGTGTACTTGTGGAGTC 1030
Query 887 TAAAAGATAGTTTATGTGTATCTGAT 912
||||||||||||||||| ||||||||
Sbjct 1031 TAAAAGATAGTTTATGTATATCTGAT 1056
Score = 274 bits (148), Expect = 1e-72
Identities = 193/213 (91%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 964 AGTGTG-AAGTGGGAAAAGATGTTTTCAGTTAATATCTTAAGCACGAATTGTTTAGACGC 1022
|||||| ||||||| |||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1068 AGTGTGTAAGTGGGCAAAGATTTTTTCAGTTAATATCTTAAGCACCAAGTGTTTAGACGC 1127
Query 1023 AAACTTTTGGAAGCTCTGTCTAGCTGCTTATTATTTTAGGTCGACCGGAAGAGATCCAGC 1082
|||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1128 AAACTTTTGGAAGCTCAGTCTAGCTGCTTATTATTTTAGGTCGACAGGAAGAAATCCAGC 1187
Query 1083 TAATAATA--C-TTTAGATCAG-----GTCCCCGATGATCACTGCACCAACGTTTTGTAT 1134
|||||||| | ||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 1188 TAATAATAATCCTTTAGATCAAATCAAGTCCCCGATGATCACTGCAGCACCGTTTTGTAT 1247
Query 1135 ACGGAGAAATTGGGTTCTTCGGTCTAGTTTCAT 1167
||||||| |||||||||||||||||||||||||
Sbjct 1248 ACGGAGAGATTGGGTTCTTCGGTCTAGTTTCAT 1280
> Ahg951919 jgi|Araly1|951919|scaffold_25100005.1
Length=346
Score = 460 bits (249), Expect = 8e-129
Identities = 267/276 (97%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 242 TCCTTGTTCTTCGATTGGAAATGTCTAGTGATCGTTGTTCAAGAACCCTATTTTTGGAAA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTTGTTCTTCGATTGGAAATGTCTAGTGATCGTTGTTCAAGAACCCTATTTTTGGATT 60
Query 302 CTTATTCAAAAGATCATCACGACCACATAAACATCTTTATTCATTCTTACACATCTCCAG 361
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CTTATTCAAAAGATCATCACGACCACATAAAAATCTTTATTCATTCTTACACATCTCCAG 120
Query 362 TTCCATATCCCAAATATTCTACTTATGATACAGTTGGTCAAATAATGGGGTATTGCAACG 421
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCCATATCCCATATATTCTATTTATGATACAGTTGGTCAAATAATGGGGTATTGCAACG 180
Query 422 GAATAGTCTGCATCTACGATCTCGGTTACATTTATCTGATTAACCCCGCAACGAGAAAAC 481
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 181 GAATAGTCTGCATCTACGATCTCGGTTACATTTATCTGATTAACCCTGCGACAAGAAAAC 240
Query 482 TCCGGATTCTTTCTCCCGAGTTTTTGCGAGAGTATA 517
|||||||||||||||||||||||||||||||| |||
Sbjct 241 TCCGGATTCTTTCTCCCGAGTTTTTGCGAGAGAATA 276
> Ahg939326 jgi|Araly1|939326|scaffold_503517.1
Length=910
Score = 248 bits (134), Expect = 7e-65
Identities = 232/277 (84%), Gaps = 16/277 (6%)
Strand=Plus/Plus
Query 786 AATAAAGCTGGCAGCCATCGATCTTCACACAGAAA-CATTTCGTTATGTGCCACTACCGA 844
||| ||||| ||||| | ||||||| |||||||| | |||||||||||| ||||||
Sbjct 500 AATGAAGCTTGCAGCTGTGGATCTTCGCACAGAAAGC-TTTCGTTATGTGTTGTTACCGA 558
Query 845 GTTGGTACACCAAATA-CTGCAAAAGTGTGTACTTATGGAGTCTAAAAGATAGTTTATGT 903
||||||||| | |||| || | ||||||| |||| ||||||||||||||| ||||||||
Sbjct 559 GTTGGTACATC-AATATCTCCGAAAGTGTCAACTTGTGGAGTCTAAAAGATCGTTTATGT 617
Query 904 GTATCTGATGTGCTAC-A----AA-ATCCGAGTGTGGACGTATGGAGTTTGCAGCAAGAA 957
||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 618 TTATCTGATGTGCTACAATGTCAATATCCGAGTGTGGACGTATGGAGTTTGCAGCAAGAA 677
Query 958 GAGCCTAGTGTGAAGTGGGAAAAGATGTT-TTCAGTTAATATCTTAAGCA-CGAATTGTT 1015
|| || |||||||||||||||||||| | |||| |||| || ||||||| ||| | |||
Sbjct 678 GATCCGAGTGTGAAGTGGGAAAAGAT-TCATTCAATTAAAATTTTAAGCATCGA-TAGTT 735
Query 1016 TAGACGCAAACTTTTGGAAGCTCTG-TCTAGCTGCTT 1051
|||||| |||||||||||| || || ||| || ||||
Sbjct 736 TAGACGTAAACTTTTGGAAACT-TGGTCTGGCGGCTT 771
> Ahg951917 jgi|Araly1|951917|scaffold_25100003.1
Length=543
Score = 241 bits (130), Expect = 1e-62
Identities = 218/258 (84%), Gaps = 16/258 (6%)
Strand=Plus/Plus
Query 805 GATCTTCACACAGAAA-CATTTCGTTATGTGCCACTACCGAGTTGGTACACCAAATA-CT 862
||||||| |||||||| | |||||||||||| ||||||||||||||| | |||| ||
Sbjct 152 GATCTTCGCACAGAAAGC-TTTCGTTATGTGTTGTTACCGAGTTGGTACATC-AATATCT 209
Query 863 GCAAAAGTGTGTACTTATGGAGTCTAAAAGATAGTTTATGTGTATCTGATGTGCTAC-A- 920
| ||||||| |||| ||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 210 CCGAAAGTGTCAACTTGTGGAGTCTAAAAGATCGTTTATGTTTATCTGATGTGCTACAAT 269
Query 921 ---AA-ATCCGAGTGTGGACGTATGGAGTTTGCAGCAAGAAGAGCCTAGTGTGAAGTGGG 976
|| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 270 GTCAATATCCGAGTGTGGACGTATGGAGTTTGCAGCAAGAAGATCCGAGTGTGAAGTGGG 329
Query 977 AAAAGATGTT-TTCAGTTAATATCTTAAGCA-CGAATTGTTTAGACGCAAACTTTTGGAA 1034
||||||| | |||| |||| || ||||||| ||| | ||||||||| ||||||||||||
Sbjct 330 AAAAGAT-TCATTCAATTAAAATTTTAAGCATCGA-TAGTTTAGACGTAAACTTTTGGAA 387
Query 1035 GCTCTG-TCTAGCTGCTT 1051
|| || ||| || ||||
Sbjct 388 ACT-TGGTCTGGCGGCTT 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5