BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62390.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497319 jgi|Araly1|497319|fgenesh2_kg.213__2__AT3G62390.1 2534 0.0
Ahg486743 jgi|Araly1|486743|fgenesh2_kg.5__2735__AT3G62390.1 2523 0.0
> Ahg497319 jgi|Araly1|497319|fgenesh2_kg.213__2__AT3G62390.1
Length=1659
Score = 2534 bits (1372), Expect = 0.0
Identities = 1558/1646 (95%), Gaps = 20/1646 (1%)
Strand=Plus/Plus
Query 62 AAGATGGAGAGACAAAGAAGTTTCTCTGTGAAGTCCACAAGAGTCTTAGCATTCATCATC 121
||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 20 AAGATGGAGAGACAAAGGAGCATCTCTGTGAAGTCCACGAGAGTCTTAGCATTCATCATC 79
Query 122 ACAATAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTACTCAAATCT 181
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 80 ACAACAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTAATCAAATCT 139
Query 182 AACTCTTCTCTTTACCCAACACCAGAAGCTAACTTCCAGATCGATTTAAGCCCTATTGCC 241
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 140 AACTCTTCTCTTTACCCAACACCAGACTCTAACTTCCAGATCGATTTAAGTCCTATAGCC 199
Query 242 GCCATTTCCGATTCTTCAGTTTCTCCTCAAGCAAGTCCGATTCTGATCTCTACCCATTTC 301
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 200 GCCATTTCCGATTCTTCAGTTTCTCCTCAAGCAAGCCCGGTTCCGATCTCTACCCATTTC 259
Query 302 AATTCACCCGAAAACACTTCCGGGTCTTCAAAAATTTCTGTTTTTGAGCAGAAGATTAGC 361
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 260 AATTCGCCCGAAAACACTTCCGGGTCTTCAAAAATTTCAGTTTTTGAGCAGAAGATTCGC 319
Query 362 GGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGATT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 320 GGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGGTT 379
Query 422 GAACTTCCGAGCAACAATGGTGAAGATAAGAAGACAGAGAAGAGAATCGAAGAATGTGAT 481
|||||| ||||||||||||||| || |||||||| |||||||||||||||| ||||||
Sbjct 380 GAACTTTCGAGCAACAATGGTG-AG--GAGAAGACAAAGAAGAGAATCGAAGAGTGTGAT 436
Query 482 GTTACGAAAGGGAAGTGGGTTTACGATAGTGATTATCCATTGTACACAAATGCGTCTTGT 541
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 437 GTTACGAAAGGGAAGTGGGTTTACGATAGCGACTATCCATTGTACACAAATGCGTCTTGT 496
Query 542 CCTTTTATCGATGAAGGATTTGGTTGTCAAAGCAATGGAAGATTGGATCTTAATTACATG 601
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 497 CCTTTTATCGATGAAGGATTTAGTTGTCAAAGCAATGGACGATTGAATCTTAATTACATG 556
Query 602 AATTGGAGATGGGAGCCTCAGGATTGTCATGCTCCCAGGTTCAATGCTACAAAGATGCTG 661
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 557 AATTGGAGATGGGAGCCTCAAGATTGTGATGCTCCCAGGTTCAATGCTACAAAAATGCTG 616
Query 662 GAAATGATTAGAGGCAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAATGG 721
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 617 GAAATGATAAGAGGGAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAGTGG 676
Query 722 GAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTATACGAAA-C 780
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 677 GAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTCTACGAAATC 736
Query 781 GCACAACCGAAGAATCACCAAAGAGAAAGGGAATTATAGCTTCCGTTTCGTGGATTATAA 840
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 737 -CACAACCGAAGAATCACAAAAGAGAAAGGGAATTACAGCTTCCGTTTCGTGGATTATAA 795
Query 841 ATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 ATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAGG 855
Query 901 AAAGAAGCGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCCAGATGGAA 960
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 856 AAAGAAGAGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCGAGATGGAA 915
Query 961 AGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAATC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAATC 975
Query 1021 AGGGGTCAACTACTACCAAGAAGGAGACCTGATTCATCCCAAACTCGATGTATCAACCGC 1080
||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 976 GGGGGTCAACTATTACCAAGAAGGAGACCAGATTCATCCCAAGCTCGATGTATCAACCGC 1035
Query 1081 TTTTAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGATCCGAAGAA 1140
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1036 TTTCAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGACCCGAAGAA 1095
Query 1141 AACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACTC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACTC 1155
Query 1201 AGGAGGTCATTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCAAGTTACTC 1260
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1156 AGGAGGTCACTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCGAGTTACTC 1215
Query 1261 GAGCAAAAAGTCCATTGTTGAGGACGTACTGAAGCAAATGAGAACACCGGTAACCCTCTT 1320
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1216 GAGCAAAAAGTCCATTGTTGAGGAAGTACTGAAGCAGATGAGAACACCGGTAACCCTCTT 1275
Query 1321 GAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCATCCTTCTATTTACGGAACAAA 1380
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1276 GAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCACCCGTCTATTTACGGAACAAA 1335
Query 1381 ACCCGAAAACCGGCGTTCAAGAGCTGTCCAAGATTGCAGCCATTGGTGTCTCCCTGGTGT 1440
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1336 ACCCGAAAACCGGCGTTCAAAAGCTGTCCAAGATTGCAGTCATTGGTGTCTCCCTGGTGT 1395
Query 1441 TCCTGATACTTGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAAATACAGTT 1500
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1396 TCCTGATACATGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAAATAGAGTT 1455
Query 1501 A-CAAACTAATCAAAGCTCCAGTTACGTGTTCAAAA--GTTTGTTTAATGTAGGCATTGC 1557
| ||||||||||| |||||||||||| |||||| || |||||||||||||||| || |
Sbjct 1456 AACAAACTAATCATAGCTCCAGTTACTTGTTCAGAATTGTTTGTTTAATGTAGGGATGG- 1514
Query 1558 TCGATCC-GATTTAACCAACCAAACCAAAACCATTTTGGAAAACCCACTATGACAACTGA 1616
||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1515 TCGATCCAG-TTTAACCAACCAAACCAAAACCATATTGGAAAAACCACTATGACAACTGA 1573
Query 1617 ACTGAAAATACAAAACCAAA---------TTTTCGTTTTCCTGTGACTCACGCTGGTCCC 1667
| |||||| |||||| ||| |||| |||||||| |||||||||||||||||
Sbjct 1574 AATGAAAAGACAAAAAAAAAAGAAAAAAGTTTTAGTTTTCCTCTGACTCACGCTGGTCCC 1633
Query 1668 GTGAATGTCAATCTCTTGGTTCATTG 1693
|||||||||||||||||||| ||||
Sbjct 1634 ATGAATGTCAATCTCTTGGTTAATTG 1659
> Ahg486743 jgi|Araly1|486743|fgenesh2_kg.5__2735__AT3G62390.1
Length=1660
Score = 2523 bits (1366), Expect = 0.0
Identities = 1557/1647 (95%), Gaps = 22/1647 (1%)
Strand=Plus/Plus
Query 62 AAGATGGAGAGACAAAGAAGTTTCTCTGTGAAGTCCACAAGAGTCTTAGCATTCATCATC 121
||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 21 AAGATGGAGAGACAAAGGAGCATCTCTGTGAAGTCCACGAGAGTCTTAGCATTCATCATC 80
Query 122 ACAATAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTACTCAAATCT 181
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 81 ACAACAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTAATCAAATCT 140
Query 182 AACTCTTCTCTTTACCCAACACCAGAAGCTAACTTCCAGATCGATTTAAGCCCTATT-GC 240
|||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||
Sbjct 141 AACTCTTCTCTTTACCCAACACCAGACTCTAACTTCCAGATCGATTTAAGTCCT-TTGGC 199
Query 241 CGCCATTTCCGATTCTTCAGTTTCTCCTCAAGCAAGTCCGATTCTGATCTCTACCCATTT 300
|||| | ||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 200 CGCCGTCTCCGATTCTTCAGTTTCTCCTCAAGCAAGCCCGGTTCCGATCTCTACCCATTT 259
Query 301 CAATTCACCCGAAAACACTTCCGGGTCTTCAAAAATTTCTGTTTTTGAGCAGAAGATTAG 360
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 260 CAATTCGCCCGAAAACACTTCCGGGTCTTCAAAAATTTCAGTTTTTGAGCAGAAGATTCG 319
Query 361 CGGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 320 CGGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGGT 379
Query 421 TGAACTTCCGAGCAACAATGGTGAAGATAAGAAGACAGAGAAGAGAATCGAAGAATGTGA 480
|||| || ||||||||||||||| || |||||||| |||||||||||||||| |||||
Sbjct 380 TGAAGTTTCGAGCAACAATGGTG-AG--GAGAAGACAAAGAAGAGAATCGAAGAGTGTGA 436
Query 481 TGTTACGAAAGGGAAGTGGGTTTACGATAGTGATTATCCATTGTACACAAATGCGTCTTG 540
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 437 TGTTACGAAAGGGAAGTGGGTTTACGATAGCGACTATCCATTGTACACAAATGCGTCTTG 496
Query 541 TCCTTTTATCGATGAAGGATTTGGTTGTCAAAGCAATGGAAGATTGGATCTTAATTACAT 600
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 497 TCCTTTTATCGATGAAGGATTTAGTTGTCAAAGCAATGGACGATTGAATCTTAATTACAT 556
Query 601 GAATTGGAGATGGGAGCCTCAGGATTGTCATGCTCCCAGGTTCAATGCTACAAAGATGCT 660
||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 557 GAATTGGAGATGGGAGCCTCAAGATTGTGATGCTCCCAGGTTCAATGCTACAAAAATGCT 616
Query 661 GGAAATGATTAGAGGCAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAATG 720
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 617 GGAAATGATTAGAGGGAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAGTG 676
Query 721 GGAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTATACGAAA- 779
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 677 GGAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTCTACGAAAT 736
Query 780 CGCACAACCGAAGAATCACCAAAGAGAAAGGGAATTATAGCTTCCGTTTCGTGGATTATA 839
| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 737 C-CACAACCGAAGAATCACAAAAGAGAAAGGGAATTACAGCTTCCGTTTCGTGGATTATA 795
Query 840 AATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAG 855
Query 900 GAAAGAAGCGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCCAGATGGA 959
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 856 GAAAGAAGAGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCGAGATGGA 915
Query 960 AAGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AAGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAAT 975
Query 1020 CAGGGGTCAACTACTACCAAGAAGGAGACCTGATTCATCCCAAACTCGATGTATCAACCG 1079
| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 976 CGGGGGTCAACTATTACCAAGAAGGAGACCAGATTCATCCCAAGCTCGATGTATCAACCG 1035
Query 1080 CTTTTAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGATCCGAAGA 1139
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1036 CTTTCAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGACCCGAAGA 1095
Query 1140 AAACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AAACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACT 1155
Query 1200 CAGGAGGTCATTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCAAGTTACT 1259
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1156 CAGGAGGTCACTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCGAGTTACT 1215
Query 1260 CGAGCAAAAAGTCCATTGTTGAGGACGTACTGAAGCAAATGAGAACACCGGTAACCCTCT 1319
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1216 CGAGCAAAAAGTCCATTGTTGAGGAAGTACTGAAGCAGATGAGAACACCGGTAACCCTCT 1275
Query 1320 TGAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCATCCTTCTATTTACGGAACAA 1379
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1276 TGAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCACCCGTCTATTTACGGAACAA 1335
Query 1380 AACCCGAAAACCGGCGTTCAAGAGCTGTCCAAGATTGCAGCCATTGGTGTCTCCCTGGTG 1439
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1336 AACCCGAAAACCGGCGTTCAAAAGCTGTCCAAGATTGCAGTCATTGGTGTCTCCCTGGTG 1395
Query 1440 TTCCTGATACTTGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAAATACAGT 1499
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1396 TTCCTGATACATGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAAATAGAGT 1455
Query 1500 T-ACAAACTAATCAAAGCTCCAGTTACGTGTTCAAAA--GTTTGTTTAATGTAGGCATTG 1556
| |||||||||||| |||||||||||| |||||| || |||||||||||||||| || |
Sbjct 1456 TTACAAACTAATCATAGCTCCAGTTACTTGTTCAGAATTGTTTGTTTAATGTAGGGATGG 1515
Query 1557 CTCGATCC-GATTTAACCAACCAAACCAAAACCATTTTGGAAAACCCACTATGACAACTG 1615
||||||| | |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1516 -TCGATCCAG-TTTAACCAACCAAACCAAAACCATATTGGAAAAACCACTATGACAACTG 1573
Query 1616 AACTGAAAATACAAAAC--------CAAA-TTTTCGTTTTCCTGTGACTCACGCTGGTCC 1666
|| |||||| |||||| |||| |||| |||||||| ||||||||||||||||
Sbjct 1574 AAATGAAAAGACAAAAAAAAAAGAACAAAGTTTTAGTTTTCCTCTGACTCACGCTGGTCC 1633
Query 1667 CGTGAATGTCAATCTCTTGGTTCATTG 1693
| |||||||||||||||||||| ||||
Sbjct 1634 CATGAATGTCAATCTCTTGGTTAATTG 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5