BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62400.2 Length=517 Score E Sequences producing significant alignments: (Bits) Value Ahg497318 jgi|Araly1|497318|fgenesh2_kg.213__1__AT3G62400.1 453 6e-127 Ahg939331 jgi|Araly1|939331|scaffold_503522.1 361 3e-99 > Ahg497318 jgi|Araly1|497318|fgenesh2_kg.213__1__AT3G62400.1 Length=375 Score = 453 bits (245), Expect = 6e-127 Identities = 282/299 (94%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 64 GTTGAGAAGAAATGGCAGGACACAAGGTTGCGCATGCCACATTGAAAGGCCCGAGTGTTG 123 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 79 GTTGAGAAGAAATGGCAGGACACAAGGTCGCGCATGCCACATTGAAAGGCCCAAGTGTTG 138 Query 124 TCAAGGAATTGATTATTGGTTTGACGCTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATGC 183 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 139 TGAAGGAATTGATTATTGGTTTGACACTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATGC 198 Query 184 ACCATTGGAATGAGCAGAGGAAAACTAGAACTTTCTATGATTTGCTTGAGAGAGGTGAGA 243 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 199 ACCATTGGAATGAGCAGAGGAAAACCAGAACTTTCTATGATTTGCTTGAAAGAGGTGAGA 258 Query 244 TCGGTGTTGTCGCCTCTGAAGAGTGAATGGGAATGCCTCTCTCTCACTCTCA--AT--GT 299 || ||||||||||| |||||||||||||| ||||||||||||||||||||| || || Sbjct 259 TCAGTGTTGTCGCCGCTGAAGAGTGAATGA-AATGCCTCTCTCTCACTCTCACTATATGT 317 Query 300 TGTTGGCTCGATTTTTCTGTTTTTATGGTTTCTTGAGATCTCAGATAAGTTACCTAAGA 358 |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 318 TGTTGGCTTGATTTTTCTGTTTT-ATTGTTTCTTGAGATCTCAGATAAGTTACCTAAGA 375 > Ahg939331 jgi|Araly1|939331|scaffold_503522.1 Length=237 Score = 361 bits (195), Expect = 3e-99 Identities = 218/229 (95%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 63 GGTTGAGAAGAAATGGCAGGACACAAGGTTGCGCATGCCACATTGAAAGGCCCGAGTGTT 122 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 10 GGTTGAGAAGAAATGGCAGGACACAAGGTCGCGCATGCCACATTGAAAGGCCCAAGTGTT 69 Query 123 GTCAAGGAATTGATTATTGGTTTGACGCTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATG 182 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 70 GTGAAGGAATTGATTATTGGTTTGACACTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATG 129 Query 183 CACCATTGGAATGAGCAGAGGAAAACTAGAACTTTCTATGATTTGCTTGAGAGAGGTGAG 242 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 130 CACCATTGGAATGAGCAGAGGAAAACCAGAACTTTCTATGATTTGCTTGAAAGAGGTGAG 189 Query 243 ATCGGTGTTGTCGCCTCTGAAGAGTGAATGGGAATGCCTCTCTCTCACT 291 ||| ||||||||||| |||||||||||||| |||||||| |||||||| Sbjct 190 ATCAGTGTTGTCGCCGCTGAAGAGTGAATGA-AATGCCTCCCTCTCACT 237 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18810705377 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5