BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62400.2

Length=517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497318 jgi|Araly1|497318|fgenesh2_kg.213__1__AT3G62400.1          453    6e-127
  Ahg939331 jgi|Araly1|939331|scaffold_503522.1                        361    3e-99 


> Ahg497318 jgi|Araly1|497318|fgenesh2_kg.213__1__AT3G62400.1
Length=375

 Score =  453 bits (245),  Expect = 6e-127
 Identities = 282/299 (94%), Gaps = 6/299 (2%)
 Strand=Plus/Plus

Query  64   GTTGAGAAGAAATGGCAGGACACAAGGTTGCGCATGCCACATTGAAAGGCCCGAGTGTTG  123
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  79   GTTGAGAAGAAATGGCAGGACACAAGGTCGCGCATGCCACATTGAAAGGCCCAAGTGTTG  138

Query  124  TCAAGGAATTGATTATTGGTTTGACGCTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATGC  183
            | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  139  TGAAGGAATTGATTATTGGTTTGACACTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATGC  198

Query  184  ACCATTGGAATGAGCAGAGGAAAACTAGAACTTTCTATGATTTGCTTGAGAGAGGTGAGA  243
            ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  199  ACCATTGGAATGAGCAGAGGAAAACCAGAACTTTCTATGATTTGCTTGAAAGAGGTGAGA  258

Query  244  TCGGTGTTGTCGCCTCTGAAGAGTGAATGGGAATGCCTCTCTCTCACTCTCA--AT--GT  299
            || ||||||||||| ||||||||||||||  |||||||||||||||||||||  ||  ||
Sbjct  259  TCAGTGTTGTCGCCGCTGAAGAGTGAATGA-AATGCCTCTCTCTCACTCTCACTATATGT  317

Query  300  TGTTGGCTCGATTTTTCTGTTTTTATGGTTTCTTGAGATCTCAGATAAGTTACCTAAGA  358
            |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  318  TGTTGGCTTGATTTTTCTGTTTT-ATTGTTTCTTGAGATCTCAGATAAGTTACCTAAGA  375


> Ahg939331 jgi|Araly1|939331|scaffold_503522.1
Length=237

 Score =  361 bits (195),  Expect = 3e-99
 Identities = 218/229 (95%), Gaps = 1/229 (0%)
 Strand=Plus/Plus

Query  63   GGTTGAGAAGAAATGGCAGGACACAAGGTTGCGCATGCCACATTGAAAGGCCCGAGTGTT  122
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  10   GGTTGAGAAGAAATGGCAGGACACAAGGTCGCGCATGCCACATTGAAAGGCCCAAGTGTT  69

Query  123  GTCAAGGAATTGATTATTGGTTTGACGCTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATG  182
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  70   GTGAAGGAATTGATTATTGGTTTGACACTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATG  129

Query  183  CACCATTGGAATGAGCAGAGGAAAACTAGAACTTTCTATGATTTGCTTGAGAGAGGTGAG  242
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  130  CACCATTGGAATGAGCAGAGGAAAACCAGAACTTTCTATGATTTGCTTGAAAGAGGTGAG  189

Query  243  ATCGGTGTTGTCGCCTCTGAAGAGTGAATGGGAATGCCTCTCTCTCACT  291
            ||| ||||||||||| ||||||||||||||  |||||||| ||||||||
Sbjct  190  ATCAGTGTTGTCGCCGCTGAAGAGTGAATGA-AATGCCTCCCTCTCACT  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18810705377


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5