BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62410.1

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486746 jgi|Araly1|486746|fgenesh2_kg.5__2738__AT3G62410.1         682    0.0  


> Ahg486746 jgi|Araly1|486746|fgenesh2_kg.5__2738__AT3G62410.1
Length=528

 Score =  682 bits (369),  Expect = 0.0
 Identities = 415/438 (95%), Gaps = 0/438 (0%)
 Strand=Plus/Plus

Query  41   CGTGTACCTTCTCCATCCAAAGATGGCAACTATAGCTACTGGTCTTAACATTGCAACCCA  100
            |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  24   CGTGTATCTTCTCCATCCAAAGATGGCAACTATAGCTACTAGTCTTAACATTGCAACCCA  83

Query  101  GCGTGTCTTCGTCACCAGCGAGAATCGGCCAGTTTGTCTCGCCGGTCCGGTCCATTTGAA  160
             |||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| ||||
Sbjct  84   ACGTGTCATCGTCACCAGCGAGAATAGACCAGTTCGTCTCGCCGGTCCAGTCCATCTGAA  143

Query  161  CAATTCGTGGAATCTTGGGTCAAGAACAACTAACCGGATGATGAAACTTCAGCCGATTAA  220
            |||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| 
Sbjct  144  CAATCCGTGGAATCTTGGGTCAAGAACAACCAACCGGATGGTGAAACTTAAGCCGATTAG  203

Query  221  AGCAGCACCGGAAGGAGGGATATCGGACGTAGTGGAGAAAAGCATTAAGGAAGCTCAGGA  280
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct  204  AGCAGCACCGGAAGGAGGGATATCGGATGTAGTGGAGAAAAGCATTAAGGAAGCTCAAGA  263

Query  281  GACTTGTGCGGGCGATCCTGTGAGTGGAGAGTGTGTAGCTGCGTGGGACGAGGTTGAAGA  340
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  264  GACTTGTGCGGGCGATCCTGTGAGCGGAGAGTGTGTAGCTGCGTGGGACGAGGTTGAAGA  323

Query  341  ACTTAGCGCAGCAGCTAGCCATGCTAGAGACAAGAAGAAGGCTGATGGTTCGGACCCTTT  400
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  324  ACTTAGCGCTGCAGCTAGCCATGCTAGAGACAAGAAGAAAGCTGATGGTTCGGACCCTTT  383

Query  401  GGAGGAATACTGCAAAGACAATCCTGAGACCAACGAGTGCCGTACTTACGACAACTGAAG  460
            |||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct  384  GGAGGAATACTGCAAAGATAACCCTGAGACGAACGAGTGCCGTACTTACGACAACTGAAG  443

Query  461  CGATCAAGATCCTGTTCC  478
            ||||||||||| ||||||
Sbjct  444  CGATCAAGATCATGTTCC  461


 Score =  102 bits (55),  Expect = 3e-21
 Identities = 63/67 (94%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  554  TCTGAATTAGCTCTAAAAACATTTGTAATTTGTAGTTCCATAAACGAATACAAAAGCCAA  613
            ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  462  TCTCAATTACCTCTAGAAACATTTGTAATTTGTAGTTCCATAAACGAATACAAAAGTCAA  521

Query  614  AATTTCA  620
            |||||||
Sbjct  522  AATTTCA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22797504366


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5