BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62422.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486748 jgi|Araly1|486748|fgenesh2_kg.5__2740__AT3G62420.1 1304 0.0
> Ahg486748 jgi|Araly1|486748|fgenesh2_kg.5__2740__AT3G62420.1
Length=1066
Score = 1304 bits (706), Expect = 0.0
Identities = 1008/1139 (88%), Gaps = 80/1139 (7%)
Strand=Plus/Plus
Query 2 CATCTTCTCCTTTAAAAGGATAAGCTTGGTGTTACTTTATCGCCTTCTTTCGTTTGGCCT 61
||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 1 CATCTTCTCCTTTAAAAGGAT-AGCCTGGTGTTACTTCATCGCCTTCTTTCGTTTGGCCT 59
Query 62 TTGA-TCCTATCATAAGCtttttttCGTTTATCAATCTTCTCGATTCAGCCACAATTCTT 120
|||| | |||| || | || ||| | || ||| | | || | ||||||||
Sbjct 60 TTGAGT-TTATC--AA---TCTTCTCG-AT-TC-ATC-T-AAG-TTTTG-TTCAATTCTT 106
Query 121 GTTTCTCAGATAATTCATCTCCTTTCTTTGATTCGTTTCCTTCTCTTCTGTCACTCAGAT 180
||||||||||||| ||| | | | |||||||||||||||||| ||||||| |||||||
Sbjct 107 GTTTCTCAGATAACTCA--T-C--T-TTTGATTCGTTTCCTTCTGTTCTGTC-CTCAGAT 159
Query 181 CTAGATCTAGATCTAGGtttttttCTTTCTCATCGGAAATTTGGCTTAGAGGCTTGTTTT 240
||||||||||||||| | |||| ||| | | ||| | || | |
Sbjct 160 CTAGATCTAGATCTA-G---TTTT-TTT-T--T------TTT-G-TT-----C------T 192
Query 241 GATCTAGGGTTTGGTTTTTGGGAATTTTGaa-aaaaaaaCAAAATTAGGAATGAATCTAT 299
||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||
Sbjct 193 GATCTAGGGTTTGGTTTTTGGGAATTTTGAAGAAAAAAA-AATATTAGGAATGATTCTAT 251
Query 300 GAGCTACTCAATCCTGTTTCGTCGGATTCGAATTCTACACTCTTTCTCCGTCGTTTACCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GAGCTACTCAATCCTGTTTCGTCGGATTCGAATTCTACACTCTTTCTCCGTCGTTTACCT 311
Query 360 CTACTACACCTACGTTTTCTCATGAAGTAATCGTTCTCGATCTCA--GTTTTCGTTTTTG 417
||||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct 312 CTACTACACATACGTTTTCTCATGAAATAATCGTTCTCGATCTCATCTTTTTCG-TTTTG 370
Query 418 ATCTAACTTATTCTTTGATAGATTTAGAAATCGGGGATTTTCAGATTGTGTTTTTGAGAG 477
||||||||||||||||||||||||||||| ||||||| | ||| |||||| | ||
Sbjct 371 ATCTAACTTATTCTTTGATAGATTTAGAATTCGGGGA-----A-TTTG-GTTTTT-ATAG 422
Query 478 GTTTTTATAGGAAAATATCTCTAGAAGAAGAAGAATAATATTATATTGATTTTAA-TTTT 536
| | | | ||||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct 423 G-----A-A-TATAATATTTCTAGAAGAAGAAG---AATATTATATTGATTTTAATTTTT 472
Query 537 GGTGAGAAGAAGTCAAAAAGTCAACGAGAAATGGGGTCGTTGCAAATGCAAACAAGTCCT 596
|||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 473 GGTGAGAACAAGTCAAAAAGTCAAC--GAAATGGGGTCGTTGCAAAGGCAAACAAGTCCT 530
Query 597 GAATCCGATAATGATCCGAGGTACGCCACGGTGACGGATGAGAGGAAGAGGAAGAGAATG 656
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 531 GAATCCGATAATGATCCGAGATACGCGACGGTGACGGATGAGAGGAAGAGGAAGAGAATG 590
Query 657 ATCTCTAACAGAGAATCTGCTCGGAGGTCAAGGATGAGGAAACAGAAGCAACTTGGTGAT 716
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 591 ATCTCTAACAGAGAATCTGCTCGTAGATCAAGGATGAGGAAACAGAAGCAGCTTGGTGAT 650
Query 717 TTGATCAACGAAGTCACTCTTCTCAAGAATGATAACGCTAAAATCACTGAGCAGGTTGAT 776
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 651 TTGATCAATGAAGTTACTCTTCTCAAGAATGATAACGCTAAAATCACCGAGCAAGTTGAT 710
Query 777 GAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGGGCACAGGCT 836
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 711 GAAGCTTCAAAGAAATACATTGAAATGGAGTCTAAGAACAATGTCTTGAGAGCACAGGCT 770
Query 837 TCGGAGTTGACGGATAGGTTGAGATCATTGAACTCTGTGCTTGAGATGGTTGAAGAAATT 896
| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 771 TTGGAGTTAACGGATAGGTTAAGATCATTGAACTCTGTGCTTGAGATGGTTGAAGAAATT 830
Query 897 AGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAGAACCCTTGGCAGATG 956
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 831 AGTGGTCAGGCTTTGGATATTCCTGAGATTCCTGAATCTATGCAAAACCCTTGGCAGATG 890
Query 957 CCTTGTCCAATGCAACCAATCAGAGCTTCTGCTGATATGTTTGATTGCTGAAGATGGATG 1016
|||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 891 CCTTGTCCAATGCAGCCAATCAGGGCTTCTGCTGATATGTTTGATTGCTGAGGATG-ATT 949
Query 1017 -ATTCATATCTGAAGGATCAA-AAATGAAGCATTGAGTTCGAGTCTTTGGTCTGTTTTAC 1074
|||| ||||| ||||||| | ||| ||||||||||| ||||||||||||||||||||||
Sbjct 950 CATTCCTATCTTAAGGATCCACAAA-GAAGCATTGAGATCGAGTCTTTGGTCTGTTTTAC 1008
Query 1075 TTACTGTCCTTGTTGTAACAATTAGTGTGTCATTGGTGAATTGAGTCTTGTGTTGTCAA 1133
||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 1009 TTACTGTCCTTGTTGTAACAATTAGTGTGTCATTGGTCAAT-GAGTCCTGTGTTGTCAA 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5