BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62430.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939294 jgi|Araly1|939294|scaffold_503485.1 876 0.0
> Ahg939294 jgi|Araly1|939294|scaffold_503485.1
Length=1328
Score = 876 bits (474), Expect = 0.0
Identities = 753/885 (85%), Gaps = 30/885 (3%)
Strand=Plus/Plus
Query 1 ATGGATAGAATCAGTAATTTACCAGATGGTGTTATCTATCGCGTGATCTCCTTACTTTCG 60
|||||||||||||||||||| ||||||| | |||| |||| || |||||||| ||||||
Sbjct 22 ATGGATAGAATCAGTAATTTGCCAGATGATATTATTTATCACGCAATCTCCTTCCTTTCG 81
Query 61 ACAAAAGAAGCTACTTGCTTGAAGTATACCTCCAAGAACTGGCTGAATCTGGTTACCATC 120
||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 82 GCAAAAGAAGCTACGTGCTTGAAGTATGCCTCCAAGAAATGGCTGAATCTGGTTACCATC 141
Query 121 ATACCGATTGCTGTTTTCGTTGATTCCTCGGCGTCTGCCATTAGTGCAAGTTTCAAAGAT 180
||||||| ||||||||| ||||| |||||| ||||||||| ||||| ||||||| |||||
Sbjct 142 ATACCGAGTGCTGTTTTTGTTGACTCCTCGTCGTCTGCCAGTAGTGGAAGTTTCCAAGAT 201
Query 181 TTCGCTGATCGAATAATGTTAGCTCGACTTGCCAGTCACCGTATTAGGAGATTCTCTCTA 240
|||||||||||||||| || |||| |||| ||||||||||||| |||||||||||||||
Sbjct 202 TTCGCTGATCGAATAAAATTGGCTCCACTTACCAGTCACCGTATGAGGAGATTCTCTCTA 261
Query 241 AAGTTGCAGTCTTTGAATTTTGCTCAGTATAAAACTGTCAATGATTGTTTACGCAATGTG 300
||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |||
Sbjct 262 AAGTTGCAGTCTTTGGATTTTGCTCAGTATGAAACTGTCAACGATTGTTTACGCAAAGTG 321
Query 301 TTGGAGTGTGGAGTCTTGGATCTTGAACTGGACATCAATGTCAGAGGAGATTACTCACTG 360
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 322 TTGGAGTGTGGTGTCTTGGATCTTGAACTGGACATCAATGTCAAAGGAGATTACTCACTG 381
Query 361 CCTTCTGAGATCTTCACTTGCAAGAGCGTTGTGAAAATGAAACTAGGGTCTGGTTTTGTT 420
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 382 CCTTTTGAGATCTTCACTTGCCAGAGCGTTGTGAAACTGAAACTAGGGTCTGGTTTTGTT 441
Query 421 ATTGACATTCTCCCTAAGAATGCT-TGGCTTCCTGCTCTTAAGACTCTCCTTCTTGATAC 479
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
Sbjct 442 ATTGACATTCTCCCTAAGAATGCGATG-CTTCCTGCTCTGAAGACTCTCCTTCTTGATTC 500
Query 480 AGTTCGGTTCGAATTCGATAACACTGCTGGTTGTTCGTTTACAAAGCTTATTTCTGCTTG 539
||||||||||||||||||||| |||| ||||||| ||||||||| |||| ||||||||||
Sbjct 501 AGTTCGGTTCGAATTCGATAATACTGGTGGTTGTGCGTTTACAAGGCTTCTTTCTGCTTG 560
Query 540 CCCTGTGCTCGAGGAGTTAGTCATAGATGGCCACAACTGTGAAGATTGGAAATGGTCTCG 599
|||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 561 CCCTGTGCTCGAGGAGTTAGTCATAGATGGATTCAACTGTGAACTTTGGAATTGGTCTCA 620
Query 600 CAGAGTATCTAGTCAGATCCTTAAGCGACTTACTATTCGGCGTA-A-AG--AATGGGTTC 655
| || | ||||| |||||||||| |||||||||| ||||| | | || | |||
Sbjct 621 TACCGTGTATAGTCGGATCCTTAAGAGACTTACTATAAGGCGTGCATATTCAAAAGATTC 680
Query 656 A--TGAT-G-GCT--CTA-G-TTTTGAGCCTATCAGTTTGGATATTCCTAGTCTTGAA-T 706
| |||| | | | ||| | ||||||| || ||||| |||| ||| |||||| | |
Sbjct 681 AGATGATTGTGATGACTATGATTTTGAGAGAATTAGTTTTGATACTCCCAGTCTT-ACCT 739
Query 707 ACTTTAAATACTTTGA-TACTCTCCGA-GAT-AGCTATCCAGTTGTTAAGCTCAACTCCC 763
|||| ||||| || || | | | | ||| || | ||||| ||| || ||||||||||
Sbjct 740 ACTTGGAATACAGGGACTA-TATTC-ATGATGAGTT-TCCAGATGTAAATCTCAACTCCC 796
Query 764 TTGTGGAAGCTAAGCTAGAACTTCCTTCTCTTTA-TA-TTGGG-GATACCTACA-ATGTT 819
|||| ||||| ||||| || || | | | | | |||| || || || || |
Sbjct 797 TTGTTGAAGCGAAGCTCCAATTTAATA-TGTGGACTGCTTGGATGA-AC--ACCGATCTA 852
Query 820 AGGAATCTGATCAAGGGGTTGAAAAATGTTCAGATTCTGCGCTTA 864
| ||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 853 ACGAATCTGTTCAAGGGGTTGAAACATGTTCAGATTCTGCGCTTA 897
Score = 324 bits (175), Expect = 1e-87
Identities = 225/248 (91%), Gaps = 7/248 (3%)
Strand=Plus/Plus
Query 1055 AAAACTCTGTTTGCGAATGCTTGGATGGGTATTCTTTCCTTTTGTCCTGCCCTATTGAGA 1114
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 954 AAAA-TCTGTCTGCGAATGCTTGGAGGGGTATTCTTTCCTTTTGTCCTGCCCTGTTGAGA 1012
Query 1115 TCCTAAAGATAACTGAGTTCGGTGGA-GAGATTGAAGAAATGGAGCAAGTAGAGTATGTC 1173
|||||| |||||| ||||||||||| | ||| | |||||||| |||| || || |||||
Sbjct 1013 TCCTAACGATAACCCAGTTCGGTGGACG-GATCGGAGAAATGGTGCAAATAAAGCATGTC 1071
Query 1174 TTGGAGAATTTGCTGTGTCTGGTGCTGTTGGAAATTCATGTTAAGACAAAGAAGA-TTGA 1232
||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||
Sbjct 1072 TTGGAGAATTTGCTGTGTCTGGTGCTGTTGGAAGTTCATGTTGAG-GAAAGAAGAGTTGA 1130
Query 1233 CAGA-AAGCTGCAGATCTTGGCGGATCTCCTAATGCTTCCGAGAGCTTCATCCAAATGCA 1291
|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1131 CA-ATAAGCTGCAGATCTTGGCGGATCTCCTAATGCTCCCGAGAGCTTCATCCAAATGCA 1189
Query 1292 AAGTCCAG 1299
||||||||
Sbjct 1190 AAGTCCAG 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5