BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62450.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899237 jgi|Araly1|899237|Al_scaffold_0005_3203                    411    1e-114


> Ahg899237 jgi|Araly1|899237|Al_scaffold_0005_3203
Length=225

 Score =  411 bits (222),  Expect = 1e-114
 Identities = 224/225 (99%), Gaps = 0/225 (0%)
 Strand=Plus/Plus

Query  1    ATGATGAAGACGAGATTTCTGGATTGGTATTTGAAGATCGCGATTGGATCGGCTATTATC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATGAAGACGAGATTTCTGGATTGGTATTTGAAGATCGCGATTGGATCGGCTATTATC  60

Query  61   GGCGGAGGCATGGAATTCTTCATGATCAAGACTGGTTTCTACGACAAGGTTACTGTAATA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGCGGAGGCATGGAATTCTTCATGATCAAGACTGGTTTCTACGACAAGGTTACTGTAATA  120

Query  121  GAAGCAGAGAGACGGGCGTTGGAAAATTCTCCTGAAGCTCAAGCCATCAGAGAAGCTCTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  GAAGCAGAGAGACGGGCGTTGGAAAATTCTCCTGAAGCTCAAGCCATGAGAGAAGCTCTT  180

Query  181  AATCCTTGGAGGAACAAGGACGCAGAAACAAGCAAAACCCCATAA  225
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATCCTTGGAGGAACAAGGACGCAGAAACAAGCAAAACCCCATAA  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5