BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G62460.1

Length=868
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg349310 jgi|Araly1|349310|fgenesh1_pg.C_scaffold_5002702           425    2e-118
  Ahg939339 jgi|Araly1|939339|scaffold_503530.1                        368    4e-101


> Ahg349310 jgi|Araly1|349310|fgenesh1_pg.C_scaffold_5002702
Length=393

 Score =  425 bits (230),  Expect = 2e-118
 Identities = 244/251 (97%), Gaps = 0/251 (0%)
 Strand=Plus/Plus

Query  398  GTATCGAGCTCAAGCGCGTACCAGAAGGCTTGAAAGGAAAGGATCATTCGAGAGATATAG  457
            ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct  143  GTATCGAGCTCAAGCGCGTACGAGAAGGCTCGAAAGGAAAGGATCATTCGAGAGATATAG  202

Query  458  CTGTTTTAACTGGCATGGGGGTGTGGATTACTGTCAATCGTGATGTATCATCATCGATAA  517
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  203  CTGTTTTAACTGGCATGGGGGTGTGGATTGCTGTCAATCGTGATGTATCATCATCGATAA  262

Query  518  TGCTAATCTCAGATAGCATCTACGGTTTTGCTGTAGACGAGTTTAAGAAGGTGAATCATT  577
            |||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct  263  TGCTAATCTCTGATAGTATCTATGATTTTGCTGTAGACGAGTTTAAGAAGGTGAATCATT  322

Query  578  ATGTTCTTTGGAAAAAACTATCAGCTAAGGGCAAGCCTATCGCCCAGACCAGAAGATACT  637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  323  ATGTTCTTTGGAAAAAACTATCAGCTAAGGGCAAGCCTATCGCCCAGACCAGAAGATACT  382

Query  638  CTAAACGTTGA  648
            |||||||||||
Sbjct  383  CTAAACGTTGA  393


> Ahg939339 jgi|Araly1|939339|scaffold_503530.1
Length=252

 Score =  368 bits (199),  Expect = 4e-101
 Identities = 209/214 (98%), Gaps = 0/214 (0%)
 Strand=Plus/Plus

Query  12   CATCTCTCTCGTCTTCCTTTACTCCGTCAAAACCATGTTTCTAAGTCAGTGCCGGAGCTG  71
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1    CATCTCTCTCGTCTTCCTTTACGCCGTCAAAACCATGTTTCTAAGTCAGTGCCGGAGCTG  60

Query  72   TAAACCTTTGCTCGAGTCTCGTATACCTTTGCTCCGCctctctctctctAAATGTCTCGA  131
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  61   TAAACCTTTGCTCGAGTCTCGTCTACCTTTGCTCCGCCTCTCTCTCTCTAAATGTCTCGA  120

Query  132  TCAGTCCTTCAAAACCACGGCTAGTAGCGAATACGGTAGTAAGATCCCTGATGCTCTTCT  191
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  121  TCAGTCCTTCAAAACCACGGCTAGTAGCGAATACGGGAGTAAGATCCCTGATGCTCTTCT  180

Query  192  GGGACATCGAAGACTGGAAGATCATAAGGCAAGC  225
            |||||||||| |||| ||||||||||||||||||
Sbjct  181  GGGACATCGACGACTAGAAGATCATAAGGCAAGC  214



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32137619031


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5